Personal tools

UBERON:0003457: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=head bone
|name=head bone
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000033
|part_of=UBERON:0000033

Latest revision as of 17:40, 12 September 2014

Name:head bone
Namespace:FANTOM
Definition:"A bone that is part of a head [Obol]." [OBOL:automatic]
Xrefs:
links:

MA:0000576

SCTID:118646007
Synonyms: "adult head bone" EXACT [OBOL:automatic]
"adult head bone organ" EXACT [OBOL:automatic]
"bone of adult head" EXACT [OBOL:automatic]
"bone of head" EXACT [OBOL:automatic]
"bone organ of adult head" EXACT [OBOL:automatic]
"bone organ of head" EXACT [OBOL:automatic]
"head bone organ" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007914(head or neck bone)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0002397 (maxilla),UBERON:0003462 (facial bone),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003457 (head bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_053239a5c279b55de3cd36b9b14b37cbp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_053239a5c279b55de3cd36b9b14b37cbp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_a5461e78606393fc6e4c26b3fd452e96p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_a5461e78606393fc6e4c26b3fd452e96p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_a5461e78606393fc6e4c26b3fd452e96p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_a5461e78606393fc6e4c26b3fd452e96p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_a5461e78606393fc6e4c26b3fd452e96p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_a5461e78606393fc6e4c26b3fd452e96p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_a5461e78606393fc6e4c26b3fd452e96p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_a5461e78606393fc6e4c26b3fd452e96p11@C17orf67
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_df4e2f44fb501671f107a758dc1e06a1p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_df4e2f44fb501671f107a758dc1e06a1p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_df4e2f44fb501671f107a758dc1e06a1p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_df4e2f44fb501671f107a758dc1e06a1p2@Otof
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_df4e2f44fb501671f107a758dc1e06a1p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_df4e2f44fb501671f107a758dc1e06a1p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_df4e2f44fb501671f107a758dc1e06a1p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_df4e2f44fb501671f107a758dc1e06a1p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_df4e2f44fb501671f107a758dc1e06a1p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_df4e2f44fb501671f107a758dc1e06a1p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_df4e2f44fb501671f107a758dc1e06a1p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_df4e2f44fb501671f107a758dc1e06a1p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_df4e2f44fb501671f107a758dc1e06a1p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_df4e2f44fb501671f107a758dc1e06a1p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_df4e2f44fb501671f107a758dc1e06a1p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_df4e2f44fb501671f107a758dc1e06a1p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_df4e2f44fb501671f107a758dc1e06a1p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_df4e2f44fb501671f107a758dc1e06a1p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_df4e2f44fb501671f107a758dc1e06a1p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_df4e2f44fb501671f107a758dc1e06a1p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_df4e2f44fb501671f107a758dc1e06a1p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_df4e2f44fb501671f107a758dc1e06a1p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_df4e2f44fb501671f107a758dc1e06a1p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_df4e2f44fb501671f107a758dc1e06a1p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_df4e2f44fb501671f107a758dc1e06a1p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_df4e2f44fb501671f107a758dc1e06a1p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_df4e2f44fb501671f107a758dc1e06a1p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_df4e2f44fb501671f107a758dc1e06a1p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_df4e2f44fb501671f107a758dc1e06a1p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_df4e2f44fb501671f107a758dc1e06a1p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_df4e2f44fb501671f107a758dc1e06a1p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_df4e2f44fb501671f107a758dc1e06a1p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_df4e2f44fb501671f107a758dc1e06a1p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_df4e2f44fb501671f107a758dc1e06a1p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_df4e2f44fb501671f107a758dc1e06a1p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_df4e2f44fb501671f107a758dc1e06a1p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_df4e2f44fb501671f107a758dc1e06a1p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_df4e2f44fb501671f107a758dc1e06a1p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_df4e2f44fb501671f107a758dc1e06a1p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_df4e2f44fb501671f107a758dc1e06a1p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_df4e2f44fb501671f107a758dc1e06a1p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_df4e2f44fb501671f107a758dc1e06a1p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_df4e2f44fb501671f107a758dc1e06a1p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_df4e2f44fb501671f107a758dc1e06a1p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_df4e2f44fb501671f107a758dc1e06a1p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_df4e2f44fb501671f107a758dc1e06a1p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_df4e2f44fb501671f107a758dc1e06a1p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_df4e2f44fb501671f107a758dc1e06a1p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_df4e2f44fb501671f107a758dc1e06a1p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_df4e2f44fb501671f107a758dc1e06a1p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_df4e2f44fb501671f107a758dc1e06a1p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_df4e2f44fb501671f107a758dc1e06a1p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_df4e2f44fb501671f107a758dc1e06a1p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_df4e2f44fb501671f107a758dc1e06a1p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_df4e2f44fb501671f107a758dc1e06a1p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_df4e2f44fb501671f107a758dc1e06a1p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_df4e2f44fb501671f107a758dc1e06a1p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_df4e2f44fb501671f107a758dc1e06a1p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_df4e2f44fb501671f107a758dc1e06a1p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_df4e2f44fb501671f107a758dc1e06a1p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_df4e2f44fb501671f107a758dc1e06a1p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_df4e2f44fb501671f107a758dc1e06a1p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_df4e2f44fb501671f107a758dc1e06a1p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_df4e2f44fb501671f107a758dc1e06a1p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_df4e2f44fb501671f107a758dc1e06a1p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_df4e2f44fb501671f107a758dc1e06a1p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:65641779..65641790, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003457&oldid=3277553"