Personal tools

UBERON:0003497: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003497
|alt_id=
|name=abdomen blood vessel
|namespace=
|def="A blood vessel that is part of an abdomen [Obol]." [OBOL:automatic]
|xref=MA:0000518
|is_a=UBERON:0003835
|synonym="blood vessel of abdomen" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A blood vessel that is part of an abdomen [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003497
|is_a=UBERON:0003835
|is_obsolete=
|located_in=
|located_in=
|name=abdomen blood vessel
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000916
|part_of=UBERON:0000916
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="blood vessel of abdomen" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000518
}}
}}

Latest revision as of 17:40, 12 September 2014

Name:abdomen blood vessel
Namespace:FANTOM
Definition:"A blood vessel that is part of an abdomen [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000518
Synonyms: "blood vessel of abdomen" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003835(abdominal segment blood vessel)
part_of:UBERON:0000916(abdomen)



Children

is a:UBERON:0015796 (liver blood vessel)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003497 (abdomen blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_26199b14e6e0aac5381128eb06f48d21p2@ENST00000448698
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_26199b14e6e0aac5381128eb06f48d21p2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_360ff1d377a096b2bad5a9581ec319c3p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_360ff1d377a096b2bad5a9581ec319c3p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_360ff1d377a096b2bad5a9581ec319c3p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_360ff1d377a096b2bad5a9581ec319c3p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_360ff1d377a096b2bad5a9581ec319c3p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_360ff1d377a096b2bad5a9581ec319c3p@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_360ff1d377a096b2bad5a9581ec319c3p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_360ff1d377a096b2bad5a9581ec319c3p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_360ff1d377a096b2bad5a9581ec319c3p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_360ff1d377a096b2bad5a9581ec319c3p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_360ff1d377a096b2bad5a9581ec319c3p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_360ff1d377a096b2bad5a9581ec319c3p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_360ff1d377a096b2bad5a9581ec319c3p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_360ff1d377a096b2bad5a9581ec319c3p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_360ff1d377a096b2bad5a9581ec319c3p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_360ff1d377a096b2bad5a9581ec319c3p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_360ff1d377a096b2bad5a9581ec319c3p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_360ff1d377a096b2bad5a9581ec319c3p@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_360ff1d377a096b2bad5a9581ec319c3p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_360ff1d377a096b2bad5a9581ec319c3p@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_360ff1d377a096b2bad5a9581ec319c3p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_360ff1d377a096b2bad5a9581ec319c3p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_360ff1d377a096b2bad5a9581ec319c3p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_360ff1d377a096b2bad5a9581ec319c3p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr12:85288471..85288502,+#_360ff1d377a096b2bad5a9581ec319c3p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_360ff1d377a096b2bad5a9581ec319c3p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_360ff1d377a096b2bad5a9581ec319c3p@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_360ff1d377a096b2bad5a9581ec319c3p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_360ff1d377a096b2bad5a9581ec319c3p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_360ff1d377a096b2bad5a9581ec319c3p@chr13:96429295..96429302, -
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_360ff1d377a096b2bad5a9581ec319c3p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_360ff1d377a096b2bad5a9581ec319c3p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_360ff1d377a096b2bad5a9581ec319c3p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_360ff1d377a096b2bad5a9581ec319c3p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_360ff1d377a096b2bad5a9581ec319c3p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_360ff1d377a096b2bad5a9581ec319c3p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_360ff1d377a096b2bad5a9581ec319c3p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_360ff1d377a096b2bad5a9581ec319c3p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_360ff1d377a096b2bad5a9581ec319c3p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_360ff1d377a096b2bad5a9581ec319c3p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_360ff1d377a096b2bad5a9581ec319c3p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_360ff1d377a096b2bad5a9581ec319c3p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_360ff1d377a096b2bad5a9581ec319c3p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_360ff1d377a096b2bad5a9581ec319c3p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_360ff1d377a096b2bad5a9581ec319c3p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_360ff1d377a096b2bad5a9581ec319c3p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_360ff1d377a096b2bad5a9581ec319c3p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_360ff1d377a096b2bad5a9581ec319c3p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_360ff1d377a096b2bad5a9581ec319c3p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_360ff1d377a096b2bad5a9581ec319c3p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_360ff1d377a096b2bad5a9581ec319c3p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_360ff1d377a096b2bad5a9581ec319c3p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_360ff1d377a096b2bad5a9581ec319c3p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_360ff1d377a096b2bad5a9581ec319c3p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_360ff1d377a096b2bad5a9581ec319c3p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_360ff1d377a096b2bad5a9581ec319c3p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_360ff1d377a096b2bad5a9581ec319c3p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_360ff1d377a096b2bad5a9581ec319c3p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_360ff1d377a096b2bad5a9581ec319c3p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_360ff1d377a096b2bad5a9581ec319c3p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_360ff1d377a096b2bad5a9581ec319c3p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_360ff1d377a096b2bad5a9581ec319c3p8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_360ff1d377a096b2bad5a9581ec319c3p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_360ff1d377a096b2bad5a9581ec319c3p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_360ff1d377a096b2bad5a9581ec319c3p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_360ff1d377a096b2bad5a9581ec319c3p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_360ff1d377a096b2bad5a9581ec319c3p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_360ff1d377a096b2bad5a9581ec319c3p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_360ff1d377a096b2bad5a9581ec319c3p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_360ff1d377a096b2bad5a9581ec319c3p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_360ff1d377a096b2bad5a9581ec319c3p@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_360ff1d377a096b2bad5a9581ec319c3p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_360ff1d377a096b2bad5a9581ec319c3p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_360ff1d377a096b2bad5a9581ec319c3p@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_360ff1d377a096b2bad5a9581ec319c3p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_360ff1d377a096b2bad5a9581ec319c3p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_360ff1d377a096b2bad5a9581ec319c3p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_360ff1d377a096b2bad5a9581ec319c3p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_360ff1d377a096b2bad5a9581ec319c3p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_360ff1d377a096b2bad5a9581ec319c3p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_360ff1d377a096b2bad5a9581ec319c3p@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_360ff1d377a096b2bad5a9581ec319c3p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_360ff1d377a096b2bad5a9581ec319c3p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_360ff1d377a096b2bad5a9581ec319c3p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_360ff1d377a096b2bad5a9581ec319c3p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_360ff1d377a096b2bad5a9581ec319c3p@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_360ff1d377a096b2bad5a9581ec319c3p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_360ff1d377a096b2bad5a9581ec319c3p@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_360ff1d377a096b2bad5a9581ec319c3p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_360ff1d377a096b2bad5a9581ec319c3p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_360ff1d377a096b2bad5a9581ec319c3p4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_360ff1d377a096b2bad5a9581ec319c3p@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_360ff1d377a096b2bad5a9581ec319c3p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_360ff1d377a096b2bad5a9581ec319c3p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_360ff1d377a096b2bad5a9581ec319c3p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_360ff1d377a096b2bad5a9581ec319c3p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_360ff1d377a096b2bad5a9581ec319c3p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_360ff1d377a096b2bad5a9581ec319c3p@chr17:35106363..35106372, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003497&oldid=3277558"