UBERON:0003714: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=FMA definition includes vasculature | |comment=FMA definition includes vasculature | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from=UBERON:0004755 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003714 | |||
|is_a=UBERON:0000479 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=neural tissue | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001016 | |part_of=UBERON:0001016 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string | |||
|subset= | |||
|synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642] | |||
|union_of= | |||
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009 | |||
}} | }} | ||
Latest revision as of 17:41, 12 September 2014
| Name: | neural tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642] | ||
| Xrefs: |
| ||
| Synonyms: |
"nerve tissue" EXACT [FMA:9642] "nervous tissue" EXACT [FMA:9642] "portion of neural tissue" EXACT [FMA:9642] | ||
| Comments: | FMA definition includes vasculature |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue) |
|---|---|
| disjoint_from: | UBERON:0004755(skeletal tissue) |
| part_of: | UBERON:0001016(nervous system) |
Children
| is a: | UBERON:0000045 (ganglion),UBERON:0001810 (nerve plexus) |
|---|---|
| disjoint from: | UBERON:0001013 (adipose tissue),UBERON:0002385 (muscle tissue) |
| derives from: | FF:0102912 (neuroepithelioma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 10728-110A8 (neuroepithelioma cell line:SK-N-MC)
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Mouse (Mus musculus)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 10728-110A8 (neuroepithelioma cell line:SK-N-MC)
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003714 (neural tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.75e-130 | FFCP PHASE1:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8 | p@chr2:212586166..212586168, - |
| 1.75e-130 | FFCP PHASE2:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8 | p@chr2:212586166..212586168, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr12:57628762..57628773, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr12:57628762..57628773, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr1:21339635..21339636, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr1:21339635..21339636, - |
| 5.22e-79 | FFCP PHASE1:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4e | p@chr8:6081804..6081807, - |
| 5.22e-79 | FFCP PHASE2:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4e | p@chr8:6081804..6081807, - |
| 2.03e-66 | FFCP PHASE2:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fd | p@chr8:27057116..27057118, + |
| 2.03e-66 | FFCP PHASE1:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fd | p@chr8:27057116..27057118, + |
| 2.84e-66 | FFCP PHASE2:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cd | p30@SOX6 |
| 2.84e-66 | FFCP PHASE1:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cd | p30@SOX6 |
| 7.73e-66 | FFCP PHASE2:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821 | p@chr2:29703653..29703657, - |
| 7.73e-66 | FFCP PHASE1:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821 | p@chr2:29703653..29703657, - |
| 2.0e-56 | FFCP PHASE2:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9 | p@chr11:126010526..126010554, - |
| 2.0e-56 | FFCP PHASE1:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9 | p@chr11:126010526..126010554, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53 | p@chr1:22696471..22696505, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53 | p28@KIAA1456 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53 | p@chr2:188432107..188432111, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53 | p28@KIAA1456 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53 | p@chr14:105807545..105807554, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53 | p@chr1:22696471..22696505, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:74702556..74702558, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53 | p@chr2:60133192..60133194, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:25161980..25161984, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53 | p@chr5:149250331..149250335, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53 | p@chr2:60133192..60133194, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53 | p@chr14:105807545..105807554, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53 | p@chr5:151258901..151258902, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53 | p@chr5:149250331..149250335, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53 | p@chr5:151258901..151258902, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53 | p9@ADRB3 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:74702556..74702558, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:25161980..25161984, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53 | p@chr7:15056365..15056368, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53 | p@chr4:127394496..127394500, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53 | p@chr1:62928606..62928608, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53 | p@chr4:127394496..127394500, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53 | p@chr7:15056365..15056368, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53 | p@chr1:62928606..62928608, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53 | p@chr2:188432107..188432111, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53 | p9@ADRB3 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr21:45724075..45724081, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_9b72837bdb72ff9efe1143abbdbacba2 | p41@NAV3 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr19:35978717..35978722, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:90420477..90420478, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chrX:131884370..131884375, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:21203484..21203485,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:21203484..21203485, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:242808350..242808356,+#_9b72837bdb72ff9efe1143abbdbacba2 | p2@LOC100131763 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_9b72837bdb72ff9efe1143abbdbacba2 | p22@SOX2-OT |
| 4.52e-50 | FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr22:30951607..30951613, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chrX:25873187..25873209, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:218214846..218214850, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr7:95704857..95704906, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_9b72837bdb72ff9efe1143abbdbacba2 | p10@PPAP2A |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:192696669..192696673,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:192696669..192696673, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:134472430..134472432, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr4:188536760..188536764, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:68527802..68527806, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr4:139590958..139590961, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_9b72837bdb72ff9efe1143abbdbacba2 | p3@ENST00000558781 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:121951983..121951986,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:121951983..121951986, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr19:20382476..20382481, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:133945378..133945386, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:21277180..21277193,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:21277180..21277193, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:133945378..133945386, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr4:139590958..139590961, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:296753..296755,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:296753..296755, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:22000519..22000525, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_9b72837bdb72ff9efe1143abbdbacba2 | p9@TCF25 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:163246025..163246029,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:163246025..163246029, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:68567714..68567717, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:21203484..21203485,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:21203484..21203485, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_9b72837bdb72ff9efe1143abbdbacba2 | p22@SOX2-OT |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr18:45498690..45498695, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chrX:25873187..25873209, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:85119696..85119699, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_9b72837bdb72ff9efe1143abbdbacba2 | p12@C16orf62 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:59444098..59444102, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr7:95704857..95704906, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:37824009..37824022,-#_9b72837bdb72ff9efe1143abbdbacba2 | p3@ADRB3 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_9b72837bdb72ff9efe1143abbdbacba2 | p10@NELL1 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:79291300..79291301,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr11:79291300..79291301, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:163246025..163246029,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:163246025..163246029, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr16:55740953..55740956, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:155299368..155299375,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr4:155299368..155299375, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:126163123..126163134, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr7:77789390..77789399, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr17:12935401..12935405, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr14:78718132..78718157,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:78718132..78718157, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:121951983..121951986, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:16317123..16317126, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr12:296753..296755,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:296753..296755, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:20791058..20791067,+#_9b72837bdb72ff9efe1143abbdbacba2 | p10@NELL1 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr11:57030314..57030346, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr9:74167667..74167687, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:56886837..56886844,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr18:56886837..56886844, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:103200303..103200307, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_9b72837bdb72ff9efe1143abbdbacba2 | p3@BC098451 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:104346803..104346806,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:104346803..104346806, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
