UBERON:0003928: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A duct that is part of a digestive system [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003928 | |||
|is_a=UBERON:0000058 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=digestive system duct | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001007 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="duct of digestive system" EXACT [OBOL:automatic];;"duct of gastrointestinal system" EXACT [OBOL:automatic];;"gastrointestinal system duct" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=TAO:0005162;;ZFA:0005162 | |||
}} | }} |
Latest revision as of 17:42, 12 September 2014
Name: | digestive system duct | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "A duct that is part of a digestive system [Obol]." [OBOL:automatic] | ||
Xrefs: |
| ||
Synonyms: |
"duct of digestive system" EXACT [OBOL:automatic] "duct of gastrointestinal system" EXACT [OBOL:automatic] "gastrointestinal system duct" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000058(duct) |
---|---|
part_of: | UBERON:0001007(digestive system) |
Children
is a: | UBERON:0002394 (bile duct),UBERON:0004913 (hepatopancreatic ampulla),UBERON:0007329 (pancreatic duct) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10542-107H2
- 10627-108H6
- 10629-108H8
- 10630-108H9
- 11522-119I1
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003928 (digestive system duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
3.07e-86 | FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:48822294..48822295, - |
3.07e-86 | FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr16:30944451..30944485, + |
3.07e-86 | FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr1:132405466..132405470, + |
3.07e-86 | FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr1:186559285..186559288, + |
3.07e-86 | FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr10:85585949..85585969, - |
3.07e-86 | FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:67870501..67870507, + |
3.07e-86 | FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr12:81955014..81955018, + |
3.07e-86 | FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr13:96429295..96429302, - |
3.07e-86 | FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr9:116223548..116223551, + |
3.07e-86 | FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr11:119254092..119254100, - |
3.07e-86 | FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr12:86691575..86691580, - |
3.07e-86 | FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr10:85586219..85586227, + |
3.07e-86 | FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr18:39513150..39513152, + |
3.07e-86 | FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:34798555..34798562, + |
3.07e-86 | FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr6:48398664..48398684, - |
3.07e-86 | FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr7:118133901..118133904, - |
3.07e-86 | FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr6:15678147..15678149, - |
3.07e-86 | FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr16:91441786..91441787, - |
3.07e-86 | FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr11:117737077..117737096, - |
3.07e-86 | FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr4:43407825..43407830, + |
3.07e-86 | FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr19:29573929..29573932, + |
3.07e-86 | FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr8:3311867..3311873, + |
3.07e-86 | FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr1:66883923..66883955, - |
3.07e-86 | FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr9:42915101..42915106, - |
3.07e-86 | FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:35945332..35945335, + |
3.07e-86 | FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr18:35881716..35881727, - |
3.07e-86 | FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:34798555..34798562, + |
3.07e-86 | FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr16:91441786..91441787, - |
3.07e-86 | FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr18:47491114..47491123, + |
3.07e-86 | FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr4:126939557..126939562, + |
3.07e-86 | FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr5:75375903..75375931, + |
3.07e-86 | FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p8@Map3k8 |
3.07e-86 | FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr7:109031260..109031268, + |
3.07e-86 | FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr9:45920408..45920437, - |
3.07e-86 | FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr6:129180613..129180616, + |
3.07e-86 | FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr12:85288471..85288502, + |
3.07e-86 | FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr15:82207617..82207621, + |
3.07e-86 | FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr5:32912678..32912687, + |
3.07e-86 | FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr8:25530071..25530072, + |
3.07e-86 | FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr4:100890388..100890423, + |
3.07e-86 | FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr6:91441074..91441080, - |
3.07e-86 | FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:35094068..35094092, - |
3.07e-86 | FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:24807620..24807650, - |
3.07e-86 | FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr4:141645056..141645068, + |
3.07e-86 | FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr5:32912678..32912687, + |
3.07e-86 | FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:35093764..35093773, - |
3.07e-86 | FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr8:111108947..111108951, + |
3.07e-86 | FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr1:132405466..132405470, + |
3.07e-86 | FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr14:101778294..101778296, + |
3.07e-86 | FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr12:87046930..87046933, + |
3.07e-86 | FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr11:107196799..107196814, + |
3.07e-86 | FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr7:117101788..117101793, + |
3.07e-86 | FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr5:53111093..53111095, + |
3.07e-86 | FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr2:169549462..169549477, + |
3.07e-86 | FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr8:114250006..114250039, - |
3.07e-86 | FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr4:57687477..57687488, + |
3.07e-86 | FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr6:91441074..91441080, - |
3.07e-86 | FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr8:11183699..11183703, - |
3.07e-86 | FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr15:97402708..97402712, + |
3.07e-86 | FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chrX:166418658..166418683, + |
3.07e-86 | FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr15:32178407..32178408, - |
3.07e-86 | FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr1:163794592..163794593, + |
3.07e-86 | FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr10:117419958..117419964, + |
3.07e-86 | FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr8:87745380..87745385, + |
3.07e-86 | FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr1:186559285..186559288, + |
3.07e-86 | FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr11:109223779..109223789, - |
3.07e-86 | FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr4:43407825..43407830, + |
3.07e-86 | FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr2:11935531..11935538, - |
3.07e-86 | FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr1:138241693..138241697, + |
3.07e-86 | FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr10:93895817..93895819, - |
3.07e-86 | FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr3:104857794..104857802, - |
3.07e-86 | FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:35106749..35106752, - |
3.07e-86 | FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr7:52781901..52781904, + |
3.07e-86 | FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr13:96429602..96429605, - |
3.07e-86 | FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr6:34549876..34549892, - |
3.07e-86 | FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:35106363..35106372, - |
3.07e-86 | FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr18:38831400..38831402, - |
3.07e-86 | FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr10:85587155..85587188, + |
3.07e-86 | FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr10:60279719..60279737, - |
3.07e-86 | FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:34798597..34798606, + |
3.07e-86 | FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr12:25364645..25364655, + |
3.07e-86 | FFCP PHASE2:Mm9::chr18:44793802..44793835,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr18:44793802..44793835, + |
3.07e-86 | FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr19:29573929..29573932, + |
3.07e-86 | FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr11:117829935..117829959, - |
3.07e-86 | FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p8@Il3ra |
3.07e-86 | FFCP PHASE2:Mm9::chr18:38831400..38831402,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr18:38831400..38831402, - |
3.07e-86 | FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr9:42915185..42915192, - |
3.07e-86 | FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr10:93819538..93819549, + |
3.07e-86 | FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr13:113554186..113554192, + |
3.07e-86 | FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr8:89310639..89310641, - |
3.07e-86 | FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:34798597..34798606, + |
3.07e-86 | FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr5:75375903..75375931, + |
3.07e-86 | FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr8:111108947..111108951, + |
3.07e-86 | FFCP PHASE2:Mm9::chr12:85288471..85288502,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr12:85288471..85288502, + |
3.07e-86 | FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr13:5840965..5840966, + |
3.07e-86 | FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr13:113554186..113554192, + |
3.07e-86 | FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr5:76329688..76329692, - |
3.07e-86 | FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr7:109031260..109031268, + |
3.07e-86 | FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr12:81955014..81955018, + |
3.07e-86 | FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_f74c7e3398ca3e8b41131d1a5959c6e6 | p@chr17:35945332..35945335, + |