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{{UBERON
{{UBERON
|id=UBERON:0004054
|alt_id=
|name=internal male genitalia
|anatomical_img_id=FMA:45655
|namespace=
|def="the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
|xref=BTO:0003096;;FMA:45655;;SCTID:310536002
|is_a=UBERON:0003135;;UBERON:0004175
|synonym="internal male genital organ" EXACT [BTO:0003096];;"male internal genitalia" EXACT [FMA:45655];;"organa genitalia masculina interna" RELATED [BTO:0003096]
|comment=Editor note: consider splitting genitalia from genital organ
|comment=Editor note: consider splitting genitalia from genital organ
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
|subset=organ_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004054
|is_a=UBERON:0003135 ;;UBERON:0004175
|is_obsolete=
|located_in=
|located_in=
|name=internal male genitalia
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000079
|part_of=UBERON:0000079
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=organ_slim
|synonym="internal male genital organ" EXACT [BTO:0003096];;"male internal genitalia" EXACT [FMA:45655];;"organa genitalia masculina interna" RELATED [BTO:0003096]
|union_of=
|xref=BTO:0003096;;FMA:45655;;SCTID:310536002
}}
}}

Latest revision as of 17:42, 12 September 2014

Name:internal male genitalia
Namespace:FANTOM
Definition:"the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
Xrefs:
links:

BTO:0003096
FMA:45655

SCTID:310536002
Synonyms: "internal male genital organ" EXACT [BTO:0003096]
"male internal genitalia" EXACT [FMA:45655]
"organa genitalia masculina interna" RELATED [BTO:0003096]
Comments:Editor note: consider splitting genitalia from genital organ
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003135(male reproductive organ),UBERON:0004175(internal genitalia)
part_of:UBERON:0000079(male reproductive system)



Children

part of:UBERON:0005352 (spermatic cord),UBERON:0006947 (male genital duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004054 (internal male genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618495..125618517, +
2.79e-195FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_b5fa5f03202162f851ac5421c58909b4p@chr14:105935020..105935028, -
2.79e-195FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_b5fa5f03202162f851ac5421c58909b4p@chr15:25165150..25165161, +
2.79e-195FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_b5fa5f03202162f851ac5421c58909b4p@chr15:25165150..25165161, +
2.79e-195FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_b5fa5f03202162f851ac5421c58909b4p2@EDDM3A
2.79e-195FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618739..125618756, -
2.79e-195FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618661..125618677, +
2.79e-195FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:69950851..69950887, +
2.79e-195FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125617607..125617617, +
2.79e-195FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:69950851..69950887, +
2.79e-195FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_b5fa5f03202162f851ac5421c58909b4p3@EDDM3A
2.79e-195FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_b5fa5f03202162f851ac5421c58909b4p1@LCN9
2.79e-195FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_b5fa5f03202162f851ac5421c58909b4p2@PATE2
2.79e-195FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_b5fa5f03202162f851ac5421c58909b4p1@LCN9
2.79e-195FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_b5fa5f03202162f851ac5421c58909b4p@chr3:140961228..140961237, +
2.79e-195FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618739..125618756, -
2.79e-195FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125617636..125617646, +
2.79e-195FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_b5fa5f03202162f851ac5421c58909b4p3@EDDM3A
2.79e-195FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125617607..125617617, +
2.79e-195FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_b5fa5f03202162f851ac5421c58909b4p3@PATE2
2.79e-195FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_b5fa5f03202162f851ac5421c58909b4p2@PATE1
2.79e-195FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_b5fa5f03202162f851ac5421c58909b4p2@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:69951723..69951737, +
2.79e-195FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618495..125618517, +
2.79e-195FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:69951723..69951737, +
2.79e-195FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_b5fa5f03202162f851ac5421c58909b4p@chrX:112044378..112044412, -
2.79e-195FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125617636..125617646, +
2.79e-195FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_b5fa5f03202162f851ac5421c58909b4p@chrX:112044378..112044412, -
2.79e-195FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_b5fa5f03202162f851ac5421c58909b4p@chr3:140961228..140961237, +
2.79e-195FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_b5fa5f03202162f851ac5421c58909b4p@chr14:105935020..105935028, -
2.79e-195FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_b5fa5f03202162f851ac5421c58909b4p3@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_b5fa5f03202162f851ac5421c58909b4p2@PATE1
2.79e-195FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_b5fa5f03202162f851ac5421c58909b4p2@EDDM3A
2.79e-195FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618661..125618677, +
3.27e-147FFCP PHASE1:Hg19::chr14:21214039..21214057,+#_bc1075cd73c6feb0190e54d648d990d4p1@EDDM3A
3.27e-147FFCP PHASE2:Hg19::chr10:114094924..114094935,-#_bc1075cd73c6feb0190e54d648d990d4p@chr10:114094924..114094935, -
3.27e-147FFCP PHASE2:Hg19::chr14:21214039..21214057,+#_bc1075cd73c6feb0190e54d648d990d4p1@EDDM3A
3.27e-147FFCP PHASE1:Hg19::chr11:69951071..69951079,+#_bc1075cd73c6feb0190e54d648d990d4p@chr11:69951071..69951079, +
3.27e-147FFCP PHASE2:Hg19::chr11:69951071..69951079,+#_bc1075cd73c6feb0190e54d648d990d4p@chr11:69951071..69951079, +
3.27e-147FFCP PHASE2:Hg19::chr10:119307515..119307518,+#_bc1075cd73c6feb0190e54d648d990d4p23@EMX2
3.27e-147FFCP PHASE1:Hg19::chr10:114094924..114094935,-#_bc1075cd73c6feb0190e54d648d990d4p@chr10:114094924..114094935, -
3.27e-147FFCP PHASE1:Hg19::chr16:2126158..2126172,+#_bc1075cd73c6feb0190e54d648d990d4p9@TSC2
3.27e-147FFCP PHASE1:Hg19::chr11:92922903..92922918,+#_bc1075cd73c6feb0190e54d648d990d4p@chr11:92922903..92922918, +
3.27e-147FFCP PHASE2:Hg19::chr11:92922903..92922918,+#_bc1075cd73c6feb0190e54d648d990d4p@chr11:92922903..92922918, +
3.27e-147FFCP PHASE1:Hg19::chr10:119307515..119307518,+#_bc1075cd73c6feb0190e54d648d990d4p23@EMX2
3.27e-147FFCP PHASE1:Hg19::chr7:25702669..25702678,-#_bc1075cd73c6feb0190e54d648d990d4p4@ENST00000446840, p4@uc003sxp.1
3.27e-147FFCP PHASE2:Hg19::chr7:25702669..25702678,-#_bc1075cd73c6feb0190e54d648d990d4p4@ENST00000446840, p4@uc003sxp.1
3.27e-147FFCP PHASE2:Hg19::chr16:2126158..2126172,+#_bc1075cd73c6feb0190e54d648d990d4p9@TSC2
5.41e-147FFCP PHASE1:Hg19::chr11:69950033..69950046,+#_c3b3cc609e557f66c6d004e29d532832p11@ANO1
5.41e-147FFCP PHASE2:Hg19::chr11:69950033..69950046,+#_c3b3cc609e557f66c6d004e29d532832p11@ANO1
5.41e-147FFCP PHASE1:Hg19::chr15:64423864..64423884,+#_c3b3cc609e557f66c6d004e29d532832p8@SNX1
5.41e-147FFCP PHASE1:Hg19::chr17:59475447..59475455,+#_c3b3cc609e557f66c6d004e29d532832p@chr17:59475447..59475455, +
5.41e-147FFCP PHASE2:Hg19::chr15:64423864..64423884,+#_c3b3cc609e557f66c6d004e29d532832p8@SNX1
5.41e-147FFCP PHASE2:Hg19::chr17:59475447..59475455,+#_c3b3cc609e557f66c6d004e29d532832p@chr17:59475447..59475455, +
5.41e-147FFCP PHASE2:Hg19::chr11:125706033..125706038,+#_c3b3cc609e557f66c6d004e29d532832p@chr11:125706033..125706038, +
5.41e-147FFCP PHASE1:Hg19::chr11:125706033..125706038,+#_c3b3cc609e557f66c6d004e29d532832p@chr11:125706033..125706038, +
8.93e-147FFCP PHASE1:Hg19::chr10:102505147..102505162,+#_7c738a1dfb98e7b108cfbee585465c7ep9@PAX2
8.93e-147FFCP PHASE1:Hg19::chr2:87985242..87985251,-#_7c738a1dfb98e7b108cfbee585465c7ep@chr2:87985242..87985251, -
8.93e-147FFCP PHASE2:Hg19::chr10:102505147..102505162,+#_7c738a1dfb98e7b108cfbee585465c7ep9@PAX2
8.93e-147FFCP PHASE2:Hg19::chr2:87985242..87985251,-#_7c738a1dfb98e7b108cfbee585465c7ep@chr2:87985242..87985251, -
1.47e-146FFCP PHASE1:Hg19::chr3:107201385..107201388,-#_efae16a6c734c0a498a651f50a0cac8dp@chr3:107201385..107201388, -
1.47e-146FFCP PHASE2:Hg19::chr3:107201385..107201388,-#_efae16a6c734c0a498a651f50a0cac8dp@chr3:107201385..107201388, -
8.98e-131FFCP PHASE2:Hg19::chr20:44144280..44144288,-#_ec6eaba8190ff5751b61d4c6dccfcd40p2@SPINT3
8.98e-131FFCP PHASE1:Hg19::chr20:43836329..43836334,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43836329..43836334, -
8.98e-131FFCP PHASE2:Hg19::chr20:43837317..43837329,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43837317..43837329, +
8.98e-131FFCP PHASE1:Hg19::chr11:1013442..1013453,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr11:1013442..1013453, -
8.98e-131FFCP PHASE1:Hg19::chr11:125657984..125657989,+#_ec6eaba8190ff5751b61d4c6dccfcd40p5@PATE3
8.98e-131FFCP PHASE2:Hg19::chr19:15736305..15736328,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:15736305..15736328, +
8.98e-131FFCP PHASE2:Hg19::chr20:43851568..43851570,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851568..43851570, +
8.98e-131FFCP PHASE1:Hg19::chr20:43851142..43851164,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851142..43851164, +
8.98e-131FFCP PHASE1:Hg19::chr20:43851994..43852003,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851994..43852003, +
8.98e-131FFCP PHASE2:Hg19::chr11:34663654..34663663,+#_ec6eaba8190ff5751b61d4c6dccfcd40p17@EHF
8.98e-131FFCP PHASE1:Hg19::chr20:43837102..43837114,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43837102..43837114, +
8.98e-131FFCP PHASE2:Hg19::chr19:15730666..15730675,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:15730666..15730675, +
8.98e-131FFCP PHASE2:Hg19::chr20:43851312..43851315,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851312..43851315, +
8.98e-131FFCP PHASE2:Hg19::chr20:43836142..43836161,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43836142..43836161, +
8.98e-131FFCP PHASE1:Hg19::chr1:24982271..24982281,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr1:24982271..24982281, +
8.98e-131FFCP PHASE1:Hg19::chr19:15734133..15734157,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:15734133..15734157, +
8.98e-131FFCP PHASE1:Hg19::chr20:43850822..43850832,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850822..43850832, +
8.98e-131FFCP PHASE1:Hg19::chr20:43851712..43851727,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851712..43851727, +
8.98e-131FFCP PHASE1:Hg19::chr20:43836696..43836705,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43836696..43836705, -
8.98e-131FFCP PHASE2:Hg19::chr20:43850531..43850538,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850531..43850538, +
8.98e-131FFCP PHASE2:Hg19::chr19:15728825..15728834,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:15728825..15728834, +
8.98e-131FFCP PHASE2:Hg19::chr11:125657931..125657940,+#_ec6eaba8190ff5751b61d4c6dccfcd40p3@PATE3
8.98e-131FFCP PHASE2:Hg19::chr20:43850927..43850931,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850927..43850931, +
8.98e-131FFCP PHASE1:Hg19::chr19:15730135..15730149,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:15730135..15730149, +
8.98e-131FFCP PHASE2:Hg19::chr20:138146..138151,+#_ec6eaba8190ff5751b61d4c6dccfcd40p3@DEFB127
8.98e-131FFCP PHASE1:Hg19::chr20:43850545..43850564,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850545..43850564, +
8.98e-131FFCP PHASE2:Hg19::chr20:43852949..43852953,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43852949..43852953, +
8.98e-131FFCP PHASE2:Hg19::chr20:43836666..43836681,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43836666..43836681, -
8.98e-131FFCP PHASE1:Hg19::chr20:43851353..43851363,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851353..43851363, +
8.98e-131FFCP PHASE1:Hg19::chr20:43836486..43836506,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43836486..43836506, -
8.98e-131FFCP PHASE2:Hg19::chr20:43838343..43838355,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43838343..43838355, +
8.98e-131FFCP PHASE1:Hg19::chr17:59239193..59239223,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr17:59239193..59239223, +
8.98e-131FFCP PHASE2:Hg19::chrX:11289165..11289191,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chrX:11289165..11289191, -
8.98e-131FFCP PHASE1:Hg19::chr6:46159025..46159070,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr6:46159025..46159070, +
8.98e-131FFCP PHASE2:Hg19::chr20:43850640..43850649,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850640..43850649, +
8.98e-131FFCP PHASE2:Hg19::chr20:40980960..40980970,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:40980960..40980970, -
8.98e-131FFCP PHASE2:Hg19::chr15:91849948..91849962,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr15:91849948..91849962, +
8.98e-131FFCP PHASE2:Hg19::chr2:80773061..80773072,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr2:80773061..80773072, +

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