UBERON:0004111: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature | |comment=note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature | ||
|created_by= | |created_by= | ||
| | |def="any opening in the body." [Wikipedia:Foramen] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004111 | |||
|is_a=UBERON:0000477 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=anatomical conduit | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="foramen" NARROW [EHDAA2:0003080];;"foramina" NARROW PLURAL [UBERON:cjm] | ||
|union_of= | |||
|xref=AEO:0000080;;EHDAA2:0003080;;FMA:242873 | |||
}} | }} | ||
Latest revision as of 17:43, 12 September 2014
| Name: | anatomical conduit | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "any opening in the body." [Wikipedia:Foramen] | ||
| Xrefs: |
| ||
| Synonyms: |
"foramen" NARROW [EHDAA2:0003080] "foramina" NARROW PLURAL [UBERON:cjm] | ||
| Comments: | note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|
Children
| is a: | UBERON:0000025 (tube),UBERON:0000055 (vessel),UBERON:0000161 (orifice),UBERON:0004145 (outflow tract),UBERON:0005744 (cranial conduit),UBERON:0015787 (upper respiratory conduit) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10052-101G7 (aorta, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10093-102C3 (salivary gland, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10196-103E7 (ductus deferens, adult)
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10052-101G7 (aorta, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10093-102C3 (salivary gland, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10196-103E7 (ductus deferens, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004111 (anatomical conduit), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.09e-50 | FFCP PHASE2:Hg19::chr19:46105411..46105481,-#_ed5ff2636c4eab5470fa3e8b5c96827f | p1@GPR4, p2@OPA3 |
| 3.09e-50 | FFCP PHASE1:Hg19::chr19:46105411..46105481,-#_ed5ff2636c4eab5470fa3e8b5c96827f | p1@GPR4, p2@OPA3 |
| 5.17e-48 | FFCP PHASE2:Hg19::chr19:46477244..46477302,-#_05f78df3b012be334bd24e07b927baec | p@chr19:46477244..46477302, - |
| 5.17e-48 | FFCP PHASE1:Hg19::chr19:46477244..46477302,-#_05f78df3b012be334bd24e07b927baec | p@chr19:46477244..46477302, - |
| 5.21e-46 | FFCP PHASE1:Hg19::chr8:21924000..21924036,+#_1199714092d974118d44efecafca5b32 | p4@EPB49 |
| 5.21e-46 | FFCP PHASE2:Hg19::chr8:21924000..21924036,+#_1199714092d974118d44efecafca5b32 | p4@EPB49 |
| 2.81e-45 | FFCP PHASE1:Hg19::chr16:66400578..66400600,+#_10baab36c76a223c0df886cd0f8bcafa | p1@CDH5 |
| 2.81e-45 | FFCP PHASE2:Hg19::chr16:66400578..66400600,+#_10baab36c76a223c0df886cd0f8bcafa | p1@CDH5 |
| 2.66e-43 | FFCP PHASE1:Hg19::chr6:153019069..153019091,+#_e2c7220dbe2e7259e077a6ad246ea285 | p1@MYCT1 |
| 2.66e-43 | FFCP PHASE2:Hg19::chr6:153019069..153019091,+#_e2c7220dbe2e7259e077a6ad246ea285 | p1@MYCT1 |
| 5.18e-43 | FFCP PHASE1:Hg19::chr4:145567297..145567355,+#_e8e02ec33af54d6ec4046e8cbebebff9 | p1@HHIP |
| 5.18e-43 | FFCP PHASE2:Hg19::chr4:145567297..145567355,+#_e8e02ec33af54d6ec4046e8cbebebff9 | p1@HHIP |
| 1.35e-42 | FFCP PHASE1:Hg19::chr9:27109440..27109456,+#_fda010b641609cabe5623d08c06a3081 | p2@TEK |
| 1.35e-42 | FFCP PHASE2:Hg19::chr9:27109440..27109456,+#_fda010b641609cabe5623d08c06a3081 | p2@TEK |
| 3.14e-42 | FFCP PHASE1:Hg19::chr10:15413035..15413131,-#_9afee04b520343e6aaa599ad081cbe41 | p1@FAM171A1 |
| 3.14e-42 | FFCP PHASE2:Hg19::chr10:15413035..15413131,-#_9afee04b520343e6aaa599ad081cbe41 | p1@FAM171A1 |
| 3.34e-41 | FFCP PHASE1:Hg19::chr20:19867269..19867283,+#_51e7c84c11471aa9631639e60e89bd9c | p3@RIN2 |
| 3.34e-41 | FFCP PHASE2:Hg19::chr20:19867269..19867283,+#_51e7c84c11471aa9631639e60e89bd9c | p3@RIN2 |
| 3.63e-41 | FFCP PHASE1:Hg19::chr16:19896150..19896205,-#_84ced748cb0f4f2e7065f2dca9c6c83a | p1@GPRC5B |
| 3.63e-41 | FFCP PHASE2:Hg19::chr16:19896150..19896205,-#_84ced748cb0f4f2e7065f2dca9c6c83a | p1@GPRC5B |
| 3.97e-40 | FFCP PHASE2:Hg19::chr4:145662551..145662554,+#_d4296f98a90c9b75cfecfbe0d076cd02 | p@chr4:145662551..145662554, + |
| 3.97e-40 | FFCP PHASE1:Hg19::chr4:145662551..145662554,+#_d4296f98a90c9b75cfecfbe0d076cd02 | p@chr4:145662551..145662554, + |
| 7.24e-40 | FFCP PHASE2:Hg19::chr15:57668695..57668734,+#_89930225c38600dc3931b5c4e675161b | p1@CGNL1 |
| 7.24e-40 | FFCP PHASE1:Hg19::chr15:57668695..57668734,+#_89930225c38600dc3931b5c4e675161b | p1@CGNL1 |
| 2.94e-39 | FFCP PHASE1:Hg19::chr19:46476791..46476819,-#_df9c5e9cbf8457eeda06590f09d6223b | p1@NOVA2 |
| 2.94e-39 | FFCP PHASE2:Hg19::chr19:46476791..46476819,-#_df9c5e9cbf8457eeda06590f09d6223b | p1@NOVA2 |
| 9.58e-39 | FFCP PHASE1:Hg19::chr9:27109392..27109435,+#_2cb8a62766046b48d54d9ef0d6b6de4f | p1@TEK |
| 9.58e-39 | FFCP PHASE2:Hg19::chr9:27109392..27109435,+#_2cb8a62766046b48d54d9ef0d6b6de4f | p1@TEK |
| 1.54e-38 | FFCP PHASE2:Hg19::chr10:88717337..88717379,-#_fe7321e68023af1a891e3a6a99f5e7b5 | p1@MMRN2 |
| 1.54e-38 | FFCP PHASE1:Hg19::chr10:88717337..88717379,-#_fe7321e68023af1a891e3a6a99f5e7b5 | p1@MMRN2 |
| 8.78e-38 | FFCP PHASE2:Hg19::chr8:55370487..55370503,+#_cbfdb866be84c034fd411b28c0c45256 | p1@SOX17 |
| 8.78e-38 | FFCP PHASE1:Hg19::chr8:55370487..55370503,+#_cbfdb866be84c034fd411b28c0c45256 | p1@SOX17 |
| 9.28e-38 | FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_b74afbafeeab0595d24f741b9ebab144 | p2@NFIB |
| 9.28e-38 | FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_b74afbafeeab0595d24f741b9ebab144 | p2@NFIB |
| 1.14e-37 | FFCP PHASE1:Hg19::chr3:50360165..50360183,-#_a7db41e27cf392b602eeb0f7cf1de28c | p2@HYAL2 |
| 1.14e-37 | FFCP PHASE2:Hg19::chr3:50360165..50360183,-#_a7db41e27cf392b602eeb0f7cf1de28c | p2@HYAL2 |
| 1.2e-37 | FFCP PHASE1:Hg19::chr8:21924052..21924103,+#_d4ad3edd10321ce55c567c9de889416b | p6@EPB49 |
| 1.2e-37 | FFCP PHASE2:Hg19::chr8:21924052..21924103,+#_d4ad3edd10321ce55c567c9de889416b | p6@EPB49 |
| 4.72e-37 | FFCP PHASE1:Hg19::chr5:141257961..141258006,-#_a5194395519de7ffac8f4200571f4a04 | p1@PCDH1 |
| 4.72e-37 | FFCP PHASE2:Hg19::chr5:141257961..141258006,-#_a5194395519de7ffac8f4200571f4a04 | p1@PCDH1 |
| 5.26e-37 | FFCP PHASE1:Hg19::chrX:50557095..50557207,-#_4aea6025c3f2f8e7ab273c8c4ec7dfb4 | p1@SHROOM4 |
| 5.26e-37 | FFCP PHASE2:Hg19::chrX:50557095..50557207,-#_4aea6025c3f2f8e7ab273c8c4ec7dfb4 | p1@SHROOM4 |
| 6.62e-37 | FFCP PHASE2:Hg19::chr2:133427767..133427797,-#_bd018a98e4b9578ac2958ca3fdee4832 | p1@LYPD1 |
| 6.62e-37 | FFCP PHASE1:Hg19::chr2:133427767..133427797,-#_bd018a98e4b9578ac2958ca3fdee4832 | p1@LYPD1 |
| 1.11e-36 | FFCP PHASE1:Hg19::chr5:150004188..150004308,+#_cd73d26d3a70e4ee2351937063349fb5 | p1@SYNPO |
| 1.11e-36 | FFCP PHASE2:Hg19::chr5:150004188..150004308,+#_cd73d26d3a70e4ee2351937063349fb5 | p1@SYNPO |
| 1.16e-36 | FFCP PHASE1:Hg19::chr11:19736307..19736327,-#_89b0f9a1305a222c994e02d41d30f46c | p2@LOC100126784 |
| 1.16e-36 | FFCP PHASE2:Hg19::chr11:19736307..19736327,-#_89b0f9a1305a222c994e02d41d30f46c | p2@LOC100126784 |
| 3.71e-36 | FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_5527fc9fd5b0f6988093868b85a4669c | p1@NFIB |
| 3.71e-36 | FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_5527fc9fd5b0f6988093868b85a4669c | p1@NFIB |
| 4.4e-36 | FFCP PHASE1:Hg19::chr5:148521047..148521076,+#_37903366aa371181fe9c74e2066a19c7 | p1@ABLIM3 |
| 4.4e-36 | FFCP PHASE2:Hg19::chr5:148521047..148521076,+#_37903366aa371181fe9c74e2066a19c7 | p1@ABLIM3 |
| 1.28e-35 | FFCP PHASE1:Hg19::chr16:2076875..2076915,+#_77d4b65a8c6efd20137e61e5ac92101a | p1@SLC9A3R2 |
| 1.28e-35 | FFCP PHASE2:Hg19::chr16:2076875..2076915,+#_77d4b65a8c6efd20137e61e5ac92101a | p1@SLC9A3R2 |
| 2.42e-35 | FFCP PHASE1:Hg19::chr1:85930830..85930858,-#_c70b080637d871729671232d403cd5ee | p1@DDAH1 |
| 2.42e-35 | FFCP PHASE2:Hg19::chr1:85930830..85930858,-#_c70b080637d871729671232d403cd5ee | p1@DDAH1 |
| 3.09e-35 | FFCP PHASE1:Hg19::chr12:12503156..12503216,-#_b91e263ae1e692c0ab3640df394e37ba | p1@MANSC1 |
| 3.09e-35 | FFCP PHASE2:Hg19::chr12:12503156..12503216,-#_b91e263ae1e692c0ab3640df394e37ba | p1@MANSC1 |
| 4.78e-35 | FFCP PHASE2:Hg19::chr17:72968809..72968834,-#_7953afce3873b9f6ce226bdd655dc7b7 | p1@C17orf28 |
| 4.78e-35 | FFCP PHASE1:Hg19::chr17:72968809..72968834,-#_7953afce3873b9f6ce226bdd655dc7b7 | p1@C17orf28 |
| 1.16e-34 | FFCP PHASE2:Hg19::chr1:6545502..6545548,-#_7a941f256cde4212324ea3fbdd61c2da | p2@PLEKHG5 |
| 1.16e-34 | FFCP PHASE1:Hg19::chr1:6545502..6545548,-#_7a941f256cde4212324ea3fbdd61c2da | p2@PLEKHG5 |
| 1.44e-34 | FFCP PHASE2:Hg19::chr4:145567767..145567851,+#_eae64c5b10c1c5855f127c37fd644c25 | p2@HHIP |
| 1.44e-34 | FFCP PHASE1:Hg19::chr4:145567767..145567851,+#_eae64c5b10c1c5855f127c37fd644c25 | p2@HHIP |
| 1.98e-34 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_a8b4a039cdafc47198f4540a59aad9c6 | p2@SOX17 |
| 1.98e-34 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_a8b4a039cdafc47198f4540a59aad9c6 | p2@SOX17 |
| 2.32e-34 | FFCP PHASE2:Hg19::chr7:150690857..150690878,+#_ca75c87f43f910b41fc8d3c2658166a2 | p1@NOS3 |
| 2.32e-34 | FFCP PHASE1:Hg19::chr7:150690857..150690878,+#_ca75c87f43f910b41fc8d3c2658166a2 | p1@NOS3 |
| 2.53e-34 | FFCP PHASE2:Hg19::chr19:54412517..54412583,+#_8cb635c9a1dd269909c8965c61c53e3a | p1@CACNG7 |
| 2.53e-34 | FFCP PHASE1:Hg19::chr19:54412517..54412583,+#_8cb635c9a1dd269909c8965c61c53e3a | p1@CACNG7 |
| 6.6e-34 | FFCP PHASE1:Hg19::chr19:54411852..54411908,+#_307dbe8b29fec0b1a1f37328a0f738e9 | p@chr19:54411852..54411908, + |
| 6.6e-34 | FFCP PHASE2:Hg19::chr19:54411852..54411908,+#_307dbe8b29fec0b1a1f37328a0f738e9 | p@chr19:54411852..54411908, + |
| 7.68e-34 | FFCP PHASE1:Hg19::chr5:66311078..66311108,+#_b85348894b5e30ea4ef62d824a9886a7 | p@chr5:66311078..66311108, + |
| 7.68e-34 | FFCP PHASE2:Hg19::chr5:66311078..66311108,+#_b85348894b5e30ea4ef62d824a9886a7 | p@chr5:66311078..66311108, + |
| 8.58e-34 | FFCP PHASE1:Hg19::chr1:79472365..79472443,-#_ed68efc45ff415b55e05f34d8d5712ba | p1@ELTD1 |
| 8.58e-34 | FFCP PHASE2:Hg19::chr1:79472365..79472443,-#_ed68efc45ff415b55e05f34d8d5712ba | p1@ELTD1 |
| 1.07e-33 | FFCP PHASE2:Hg19::chr5:138842286..138842336,-#_d1eba2fc8412ccd1fc68ed3b5c42c4a8 | p1@ECSCR |
| 1.07e-33 | FFCP PHASE1:Hg19::chr5:138842286..138842336,-#_d1eba2fc8412ccd1fc68ed3b5c42c4a8 | p1@ECSCR |
| 1.19e-33 | FFCP PHASE1:Hg19::chr2:242498138..242498179,+#_46f34509b058d2f92978b022489089e7 | p1@BOK |
| 1.19e-33 | FFCP PHASE2:Hg19::chr2:242498138..242498179,+#_46f34509b058d2f92978b022489089e7 | p1@BOK |
| 1.26e-33 | FFCP PHASE1:Hg19::chr4:145567278..145567296,+#_0330727f3f2b67456482e129595371bd | p3@HHIP |
| 1.26e-33 | FFCP PHASE2:Hg19::chr4:145567278..145567296,+#_0330727f3f2b67456482e129595371bd | p3@HHIP |
| 2.27e-33 | FFCP PHASE2:Hg19::chr3:58563094..58563126,-#_43fd6b4285cf1410ecb2e2710a852ae5 | p1@FAM107A |
| 2.27e-33 | FFCP PHASE1:Hg19::chr3:58563094..58563126,-#_43fd6b4285cf1410ecb2e2710a852ae5 | p1@FAM107A |
| 2.31e-33 | FFCP PHASE2:Hg19::chr9:14314946..14314983,-#_0c6343186099899eaee9eac6396e3dad | p8@NFIB |
| 2.31e-33 | FFCP PHASE1:Hg19::chr9:14314946..14314983,-#_0c6343186099899eaee9eac6396e3dad | p8@NFIB |
| 2.42e-33 | FFCP PHASE1:Hg19::chr9:27109199..27109248,+#_5b43b9778728447c798bf0a1f41e4ec0 | p3@TEK |
| 2.42e-33 | FFCP PHASE2:Hg19::chr9:27109199..27109248,+#_5b43b9778728447c798bf0a1f41e4ec0 | p3@TEK |
| 2.59e-33 | FFCP PHASE1:Hg19::chr6:12290586..12290600,+#_7a6400f360b3e12cacd94cc1b3821001 | p1@EDN1 |
| 2.59e-33 | FFCP PHASE2:Hg19::chr6:12290586..12290600,+#_7a6400f360b3e12cacd94cc1b3821001 | p1@EDN1 |
| 2.72e-33 | FFCP PHASE1:Hg19::chr3:195619579..195619630,-#_b2da389506d2683a2769ba57d9f077d8 | p2@TNK2 |
| 2.72e-33 | FFCP PHASE2:Hg19::chr3:195619579..195619630,-#_b2da389506d2683a2769ba57d9f077d8 | p2@TNK2 |
| 3.0e-33 | FFCP PHASE1:Hg19::chrX:128788923..128788942,-#_3b49237de304fe0b5975983213b9f022 | p1@APLN |
| 3.0e-33 | FFCP PHASE2:Hg19::chrX:128788923..128788942,-#_3b49237de304fe0b5975983213b9f022 | p1@APLN |
| 3.06e-33 | FFCP PHASE2:Hg19::chr22:41697520..41697613,+#_9cd15852f96a8e6588ccd7df99627087 | p1@ZC3H7B |
| 3.06e-33 | FFCP PHASE1:Hg19::chr22:41697520..41697613,+#_9cd15852f96a8e6588ccd7df99627087 | p1@ZC3H7B |
| 3.73e-33 | FFCP PHASE2:Hg19::chr16:66400533..66400545,+#_5bde25a1083a3ff0c4f995a2eb0a0e04 | p2@CDH5 |
| 3.73e-33 | FFCP PHASE1:Hg19::chr16:66400533..66400545,+#_5bde25a1083a3ff0c4f995a2eb0a0e04 | p2@CDH5 |
| 6.09e-33 | FFCP PHASE2:Hg19::chr16:19869059..19869073,-#_07f713e9a33fae327691834469617f8d | p@chr16:19869059..19869073, - |
| 6.09e-33 | FFCP PHASE1:Hg19::chr16:19869059..19869073,-#_07f713e9a33fae327691834469617f8d | p@chr16:19869059..19869073, - |
