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{{UBERON
{{UBERON
|id=UBERON:0004198
|alt_id=
|name=comma-shaped body
|namespace=
|def="The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [GO:0072049]
|xref=EMAPA:27681;;EMAPA:27835;;ZFA:0005588
|is_a=UBERON:0000061;;UBERON:0004120;;UBERON:0006554
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [GO:0072049]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0004209
|develops_from=UBERON:0004209
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004198
|is_a=UBERON:0001231 ;;UBERON:0010532
|is_obsolete=
|located_in=
|located_in=
|name=comma-shaped body
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001285
|part_of=UBERON:0001285
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=EMAPA:27681;;EMAPA:27835;;ZFA:0005588
}}
}}

Latest revision as of 17:45, 12 September 2014

Name:comma-shaped body
Namespace:FANTOM
Definition:"The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [GO:0072049]
Xrefs:
links:

EMAPA:27681
EMAPA:27835

ZFA:0005588

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001231(nephron tubule),UBERON:0010532(primitive nephron)
develops_from:UBERON:0004209(renal vesicle)
part_of:UBERON:0001285(nephron)



Children

develops from:UBERON:0004199 (S-shaped body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004198 (comma-shaped body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_04db49fa62382d17469b3e1f47694edfp@chr2:120409486..120409492, +
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_04db49fa62382d17469b3e1f47694edfp@chr2:120409486..120409492, +
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_aade058184536394a30887ae716c7570p1@ENST00000413103
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_aade058184536394a30887ae716c7570p1@ENST00000413103
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_83ccde5f2091b149d15773f589e8bd2cp@chr17:79426453..79426462, +
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_83ccde5f2091b149d15773f589e8bd2cp@chr17:79426453..79426462, +
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_d852308b2b44c78f5f252fcabe8057abp@chr8:77557753..77557755, -
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_d852308b2b44c78f5f252fcabe8057abp@chr8:77557753..77557755, -
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_4e28b393731a04abc7859040cdd87645p6@TINAGL1
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_4e28b393731a04abc7859040cdd87645p6@TINAGL1
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_d7632ea1097ecb60442ca6c34e5ce918p9@FURIN
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_d7632ea1097ecb60442ca6c34e5ce918p9@FURIN
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3ad32eb0575b028eaf02a4b833bd4daep7@LRRN4
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3ad32eb0575b028eaf02a4b833bd4daep7@LRRN4
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_55ec4e90fed87e669c5925ba08725acbp@chr22:47030082..47030087, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_55ec4e90fed87e669c5925ba08725acbp@chr2:26700331..26700340, -
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_55ec4e90fed87e669c5925ba08725acbp@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_55ec4e90fed87e669c5925ba08725acbp@chr1:42777312..42777314, +
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_55ec4e90fed87e669c5925ba08725acbp7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_55ec4e90fed87e669c5925ba08725acbp@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_55ec4e90fed87e669c5925ba08725acbp@chr2:26700331..26700340, -
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_55ec4e90fed87e669c5925ba08725acbp@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_55ec4e90fed87e669c5925ba08725acbp7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_55ec4e90fed87e669c5925ba08725acbp@chr6:18225523..18225534, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_df4dd1c19e9b65f890d2f8d1544a7d47p@chr10:3477893..3477912, -
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_df4dd1c19e9b65f890d2f8d1544a7d47p@chr10:3477893..3477912, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_6c9d99b0176a82b5f41f0a156e837390p@chr1:172926077..172926120, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_6c9d99b0176a82b5f41f0a156e837390p@chr1:172926077..172926120, -
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_c1e6b3cb6530773c999ac164c351da2ep5@APLN
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_c1e6b3cb6530773c999ac164c351da2ep5@APLN
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_6bc5ca202277363c51466253311917e5p@chr2:693380..693398, +
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_6bc5ca202277363c51466253311917e5p@chr2:693380..693398, +
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_8a4804522375069d79bcd87de83dec17p@chr6:84849252..84849259, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_8a4804522375069d79bcd87de83dec17p@chr2:133426030..133426041, -
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_8a4804522375069d79bcd87de83dec17p@chr6:84849252..84849259, +
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_8a4804522375069d79bcd87de83dec17p@chr2:133426030..133426041, -
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_2bb9e1fc9b9d1d3cfad26862cbe0a7bep23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_2bb9e1fc9b9d1d3cfad26862cbe0a7bep10@TRIL
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_2bb9e1fc9b9d1d3cfad26862cbe0a7bep23@TTC39A
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_2bb9e1fc9b9d1d3cfad26862cbe0a7bep10@TRIL
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_6ecb08f5925f2ee27b0fd7bbc5e25201p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_6ecb08f5925f2ee27b0fd7bbc5e25201p@chr15:85403302..85403304, +
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_6ecb08f5925f2ee27b0fd7bbc5e25201p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_6ecb08f5925f2ee27b0fd7bbc5e25201p@chr15:85403302..85403304, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_916ac3aca60177ca01e7308742252c97p@chr16:2141529..2141537, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_916ac3aca60177ca01e7308742252c97p@chr16:2141529..2141537, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_bf7dc4ac8ed860835b07d00288d71b0ep@chr5:74244100..74244117, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_bf7dc4ac8ed860835b07d00288d71b0ep@chr5:74244100..74244117, +
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_376e37779d252c9a616652e2650a4c87p@chr5:148651758..148651769, -
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_376e37779d252c9a616652e2650a4c87p@chr5:148651758..148651769, -
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_a9f30cb609c822ce61ffabccd5bfa1e3p@chr16:86768403..86768437, +
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_a9f30cb609c822ce61ffabccd5bfa1e3p@chr16:86768403..86768437, +
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_ea5270cfd91c77b56a6bf33ef983c3f5p@chr17:2076002..2076026, -
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_ea5270cfd91c77b56a6bf33ef983c3f5p@chr17:2076002..2076026, -
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_e921240852a7e0be8d139dc2b62b8571p3@FAM167B
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_e921240852a7e0be8d139dc2b62b8571p3@FAM167B
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_5a58a2117456041655e46de3bcfd01d9p@chr11:124628392..124628427, -
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_5a58a2117456041655e46de3bcfd01d9p@chr11:124628392..124628427, -
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_06a1599087d6869f4adbe61422c5c693p1@ENST00000487339
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_06a1599087d6869f4adbe61422c5c693p1@ENST00000487339
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_aec9ba842063c5f763395b62286a8019p@chr19:47231340..47231383, -
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_aec9ba842063c5f763395b62286a8019p@chr19:47231340..47231383, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_f350e88cd7b29eb411b941a9a9a0e956p@chr19:1826957..1826984, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_f350e88cd7b29eb411b941a9a9a0e956p@chr19:1826957..1826984, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_29e1503170f591decb8dfca43b645d8ap@chr4:38057595..38057624, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_29e1503170f591decb8dfca43b645d8ap@chr4:38057595..38057624, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_25c7ccc40f1c2ff71fe4c2710591e7f5p@chr2:133426106..133426117, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_25c7ccc40f1c2ff71fe4c2710591e7f5p@chr2:133426106..133426117, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_33187ae134dfd7b04af869694ef58e78p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_33187ae134dfd7b04af869694ef58e78p@chr9:35753821..35753835, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_33187ae134dfd7b04af869694ef58e78p@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_33187ae134dfd7b04af869694ef58e78p@chr15:36653709..36653720, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_1f891ac4bb6dec36e7d49edc41452c05p@chr4:145568170..145568180, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_1f891ac4bb6dec36e7d49edc41452c05p@chr4:145568170..145568180, -
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_a99226147684528ac7ac06a6f7c37af5p1@WDR87
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_a99226147684528ac7ac06a6f7c37af5p1@WDR87
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_c3a870966a7653cca475804c51aed788p@chr14:91270270..91270281, -
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_c3a870966a7653cca475804c51aed788p@chr14:91270270..91270281, -
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_60174c8e3024bcf62797f8769c39ea36p6@ACVRL1
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_60174c8e3024bcf62797f8769c39ea36p6@ACVRL1
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_ff94aa15406865b507f37eb4b37c4073p@chr3:43538305..43538325, -
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_ff94aa15406865b507f37eb4b37c4073p@chr3:43538305..43538325, -
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_0a9a9d579adf972114be1c8caee0fc28p@chr17:171147..171161, +
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_0a9a9d579adf972114be1c8caee0fc28p@chr17:171147..171161, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_f4db11f9b758808b035458374c651606p@chr1:22211913..22211920, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_f4db11f9b758808b035458374c651606p@chr1:22211913..22211920, +
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_b7694aa7f31665af5c5b2c46897cb8c8p7@HOXA10
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_b7694aa7f31665af5c5b2c46897cb8c8p7@HOXA10
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_fb982e4cf7b281f85f42e633d83967e9p3@TINAGL1
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_fb982e4cf7b281f85f42e633d83967e9p3@TINAGL1
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_308c23f0fb583810fec06015d200fde8p17@CTGF
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_308c23f0fb583810fec06015d200fde8p17@CTGF
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_c323e64f882ad268a93504602e7fdfc6p5@AP2A2
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_c323e64f882ad268a93504602e7fdfc6p5@AP2A2
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_0a8ee1f570db63a1923a3ca60e56cec1p@chr19:42007093..42007107, -
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_0a8ee1f570db63a1923a3ca60e56cec1p@chr19:42007093..42007107, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_38f06971605966329dc91570487d55d7p@chrX:128781853..128781866, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_38f06971605966329dc91570487d55d7p@chrX:128781853..128781866, -
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_6e122e40e031e31498fa9e8c9cdecffcp@chr16:86604624..86604648, +
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_6e122e40e031e31498fa9e8c9cdecffcp@chr16:86604624..86604648, +

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