Personal tools

UBERON:0004732: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004732
|alt_id=
|name=segmental subdivision of nervous system
|namespace=
|def="An organ segment that is part of a nervous system [Obol]." [OBOL:automatic]
|xref=FBbt:00005140
|is_a=UBERON:0000063;;UBERON:0004121
|synonym="neuromere" RELATED [FBbt:00005140]
|comment=Editor note: revisit this after CARO is revised and/or we have defined metameric segment
|comment=Editor note: revisit this after CARO is revised and/or we have defined metameric segment
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ segment that is part of a nervous system [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004732
|is_a=UBERON:0000063
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=segmental subdivision of nervous system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001016
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="neuromere" RELATED [FBbt:00005140]
|union_of=
|xref=FBbt:00005140
}}
}}

Latest revision as of 17:47, 12 September 2014

Name:segmental subdivision of nervous system
Namespace:FANTOM
Definition:"An organ segment that is part of a nervous system [Obol]." [OBOL:automatic]
Xrefs:
links:
FBbt:00005140
Synonyms: "neuromere" RELATED [FBbt:00005140]
Comments:Editor note: revisit this after CARO is revised and/or we have defined metameric segment

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000063(organ segment)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0002464 (nerve trunk),UBERON:0004733 (segmental subdivision of hindbrain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004732 (segmental subdivision of nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.62e-102FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_5d04f7d17867be525f5bd55a2647f684p@chr2:72381655..72381673, -
5.62e-102FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_5d04f7d17867be525f5bd55a2647f684p@chr2:72381655..72381673, -
3.84e-82FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_e0fbfc9fbfd07b44352c44add89408aap1@SLC6A5
3.84e-82FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_e0fbfc9fbfd07b44352c44add89408aap1@SLC6A5
7.15e-78FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_3784ef53a752239651d3e646191ffaafp3@CRTAM
7.15e-78FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_3784ef53a752239651d3e646191ffaafp3@CRTAM
8.17e-78FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_59c6b8314a891fcc5d100f5ab09f48d9p1@BARHL1
8.17e-78FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_59c6b8314a891fcc5d100f5ab09f48d9p1@BARHL1
7.52e-76FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_52a0d24a07049f84f787228372ffc8a7p@chr4:117873850..117873861, -
7.52e-76FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_52a0d24a07049f84f787228372ffc8a7p@chr6:152884391..152884402, -
7.52e-76FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_52a0d24a07049f84f787228372ffc8a7p@chr4:117873850..117873861, -
7.52e-76FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_52a0d24a07049f84f787228372ffc8a7p@chr6:152884391..152884402, -
1.89e-74FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_9284dbe40b4fb8dd413f709cf459ff16p@chr9:8779377..8779397, -
1.89e-74FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_9284dbe40b4fb8dd413f709cf459ff16p@chr9:8779377..8779397, -
2.63e-68FFCP PHASE2:Hg19::chr16:76311443..76311452,+#_ffa66f6a2824f269a7470d4d3a1241dbp9@CNTNAP4
2.63e-68FFCP PHASE1:Hg19::chr16:76311443..76311452,+#_ffa66f6a2824f269a7470d4d3a1241dbp9@CNTNAP4
2.95e-68FFCP PHASE2:Hg19::chr6:152884406..152884453,-#_63a81745b3ccf2a7acbe8550caca07a7p@chr6:152884406..152884453, -
2.95e-68FFCP PHASE1:Hg19::chr6:152884406..152884453,-#_63a81745b3ccf2a7acbe8550caca07a7p@chr6:152884406..152884453, -
4.7e-68FFCP PHASE1:Hg19::chr13:100311142..100311153,+#_30046e320eb392508f4bc23461992558p@chr13:100311142..100311153, +
4.7e-68FFCP PHASE2:Hg19::chr13:100311142..100311153,+#_30046e320eb392508f4bc23461992558p@chr13:100311142..100311153, +
9.42e-68FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_81027e7de144f456a115e7398d05c38bp@chr9:128998376..128998387, -
9.42e-68FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_81027e7de144f456a115e7398d05c38bp@chr9:128998376..128998387, -
1.89e-67FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_e99cafbbee78e6f7d9aab2cc71f530adp@chr10:130489605..130489614, -
1.89e-67FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_e99cafbbee78e6f7d9aab2cc71f530adp@chr10:130489605..130489614, -
1.03e-64FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_518184d78bb4e2c52154c1c61b156bb9p9@TRPM3
1.03e-64FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_518184d78bb4e2c52154c1c61b156bb9p9@TRPM3
2.06e-63FFCP PHASE2:Hg19::chr11:43855489..43855503,-#_fa5fc05079b9489280fa1b250ec6bbfap1@ENST00000524643
2.06e-63FFCP PHASE2:Hg19::chr3:147110022..147110050,-#_fa5fc05079b9489280fa1b250ec6bbfap8@ZIC4
2.06e-63FFCP PHASE1:Hg19::chr3:147110022..147110050,-#_fa5fc05079b9489280fa1b250ec6bbfap8@ZIC4
2.06e-63FFCP PHASE2:Hg19::chr5:161112715..161112736,+#_fa5fc05079b9489280fa1b250ec6bbfap1@GABRA6
2.06e-63FFCP PHASE1:Hg19::chr5:161112715..161112736,+#_fa5fc05079b9489280fa1b250ec6bbfap1@GABRA6
2.06e-63FFCP PHASE1:Hg19::chr11:43855489..43855503,-#_fa5fc05079b9489280fa1b250ec6bbfap1@ENST00000524643
2.34e-63FFCP PHASE1:Hg19::chr15:54378951..54378954,+#_b9965eb9c441c44b529ce01b8d278433p@chr15:54378951..54378954, +
2.34e-63FFCP PHASE1:Hg19::chr6:72922590..72922605,+#_b9965eb9c441c44b529ce01b8d278433p5@RIMS1
2.34e-63FFCP PHASE2:Hg19::chr15:54378951..54378954,+#_b9965eb9c441c44b529ce01b8d278433p@chr15:54378951..54378954, +
2.34e-63FFCP PHASE2:Hg19::chr6:72922590..72922605,+#_b9965eb9c441c44b529ce01b8d278433p5@RIMS1
2.67e-63FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_0772d4c1c018462e3ce613ef1eef257cp17@BDNF
2.67e-63FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_0772d4c1c018462e3ce613ef1eef257cp17@BDNF
1.03e-61FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_d5591540787d2986a5652a11bbd0c645p2@LOC100505835
1.03e-61FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_d5591540787d2986a5652a11bbd0c645p2@LOC100505835
1.21e-61FFCP PHASE1:Hg19::chr16:290098..290109,+#_1fbfd1634524f33bc1fa735f3062d943p13@ITFG3
1.21e-61FFCP PHASE2:Hg19::chr16:290098..290109,+#_1fbfd1634524f33bc1fa735f3062d943p13@ITFG3
4.89e-61FFCP PHASE2:Hg19::chr14:77582905..77582916,+#_93614b595f7c54f4f4d9466d20a55bc4p5@TMEM63C
4.89e-61FFCP PHASE2:Hg19::chr15:81489280..81489292,+#_93614b595f7c54f4f4d9466d20a55bc4p15@IL16
4.89e-61FFCP PHASE1:Hg19::chr14:52168958..52169000,+#_93614b595f7c54f4f4d9466d20a55bc4p27@FRMD6
4.89e-61FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_93614b595f7c54f4f4d9466d20a55bc4p22@CA10
4.89e-61FFCP PHASE2:Hg19::chr6:72922614..72922626,+#_93614b595f7c54f4f4d9466d20a55bc4p19@RIMS1
4.89e-61FFCP PHASE1:Hg19::chr18:8783637..8783650,+#_93614b595f7c54f4f4d9466d20a55bc4p@chr18:8783637..8783650, +
4.89e-61FFCP PHASE1:Hg19::chr17:36720287..36720302,-#_93614b595f7c54f4f4d9466d20a55bc4p18@SRCIN1
4.89e-61FFCP PHASE1:Hg19::chr5:161112654..161112669,+#_93614b595f7c54f4f4d9466d20a55bc4p2@GABRA6
4.89e-61FFCP PHASE1:Hg19::chr6:127533978..127533993,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr6:127533978..127533993, -
4.89e-61FFCP PHASE1:Hg19::chr1:16366392..16366411,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr1:16366392..16366411, -
4.89e-61FFCP PHASE1:Hg19::chr11:123447984..123447987,+#_93614b595f7c54f4f4d9466d20a55bc4p7@AB384137
4.89e-61FFCP PHASE1:Hg19::chr14:60031159..60031181,-#_93614b595f7c54f4f4d9466d20a55bc4p1@ENST00000556936
4.89e-61FFCP PHASE2:Hg19::chr17:588423..588441,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr17:588423..588441, -
4.89e-61FFCP PHASE2:Hg19::chr2:39894722..39894736,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr2:39894722..39894736, -
4.89e-61FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr17:72857611..72857619, -
4.89e-61FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_93614b595f7c54f4f4d9466d20a55bc4p2@CU680380
4.89e-61FFCP PHASE1:Hg19::chr6:72922614..72922626,+#_93614b595f7c54f4f4d9466d20a55bc4p19@RIMS1
4.89e-61FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_93614b595f7c54f4f4d9466d20a55bc4p2@CU680380
4.89e-61FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_93614b595f7c54f4f4d9466d20a55bc4p11@RAB37
4.89e-61FFCP PHASE2:Hg19::chr20:39790925..39790940,+#_93614b595f7c54f4f4d9466d20a55bc4p@chr20:39790925..39790940, +
4.89e-61FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_93614b595f7c54f4f4d9466d20a55bc4p1@KIAA1024
4.89e-61FFCP PHASE2:Hg19::chr4:71928360..71928370,+#_93614b595f7c54f4f4d9466d20a55bc4p@chr4:71928360..71928370, +
4.89e-61FFCP PHASE2:Hg19::chr1:16366392..16366411,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr1:16366392..16366411, -
4.89e-61FFCP PHASE1:Hg19::chr14:77582905..77582916,+#_93614b595f7c54f4f4d9466d20a55bc4p5@TMEM63C
4.89e-61FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_93614b595f7c54f4f4d9466d20a55bc4p4@AB384137
4.89e-61FFCP PHASE2:Hg19::chr6:127533959..127533972,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr6:127533959..127533972, -
4.89e-61FFCP PHASE1:Hg19::chr2:39894722..39894736,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr2:39894722..39894736, -
4.89e-61FFCP PHASE2:Hg19::chr5:161112654..161112669,+#_93614b595f7c54f4f4d9466d20a55bc4p2@GABRA6
4.89e-61FFCP PHASE1:Hg19::chr2:149835088..149835109,+#_93614b595f7c54f4f4d9466d20a55bc4p9@KIF5C
4.89e-61FFCP PHASE2:Hg19::chr6:127533978..127533993,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr6:127533978..127533993, -
4.89e-61FFCP PHASE2:Hg19::chr6:34073743..34073761,-#_93614b595f7c54f4f4d9466d20a55bc4p1@GRM4
4.89e-61FFCP PHASE2:Hg19::chr14:52168958..52169000,+#_93614b595f7c54f4f4d9466d20a55bc4p27@FRMD6
4.89e-61FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr17:72857611..72857619, -
4.89e-61FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_93614b595f7c54f4f4d9466d20a55bc4p29@RIMS1
4.89e-61FFCP PHASE2:Hg19::chr3:98519943..98519958,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr3:98519943..98519958, -
4.89e-61FFCP PHASE1:Hg19::chr6:34073743..34073761,-#_93614b595f7c54f4f4d9466d20a55bc4p1@GRM4
4.89e-61FFCP PHASE2:Hg19::chr2:149835088..149835109,+#_93614b595f7c54f4f4d9466d20a55bc4p9@KIF5C
4.89e-61FFCP PHASE2:Hg19::chr5:161112968..161112988,+#_93614b595f7c54f4f4d9466d20a55bc4p3@GABRA6
4.89e-61FFCP PHASE2:Hg19::chr11:123447984..123447987,+#_93614b595f7c54f4f4d9466d20a55bc4p7@AB384137
4.89e-61FFCP PHASE1:Hg19::chr20:39790925..39790940,+#_93614b595f7c54f4f4d9466d20a55bc4p@chr20:39790925..39790940, +
4.89e-61FFCP PHASE1:Hg19::chr5:161112968..161112988,+#_93614b595f7c54f4f4d9466d20a55bc4p3@GABRA6
4.89e-61FFCP PHASE1:Hg19::chr11:122733033..122733052,+#_93614b595f7c54f4f4d9466d20a55bc4p4@CRTAM
4.89e-61FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_93614b595f7c54f4f4d9466d20a55bc4p22@CA10
4.89e-61FFCP PHASE1:Hg19::chr3:147125238..147125275,+#_93614b595f7c54f4f4d9466d20a55bc4p@chr3:147125238..147125275, +
4.89e-61FFCP PHASE2:Hg19::chr14:60049016..60049032,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr14:60049016..60049032, -
4.89e-61FFCP PHASE1:Hg19::chr14:60049016..60049032,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr14:60049016..60049032, -
4.89e-61FFCP PHASE1:Hg19::chr3:98519943..98519958,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr3:98519943..98519958, -
4.89e-61FFCP PHASE2:Hg19::chr3:147125238..147125275,+#_93614b595f7c54f4f4d9466d20a55bc4p@chr3:147125238..147125275, +
4.89e-61FFCP PHASE1:Hg19::chr17:588423..588441,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr17:588423..588441, -
4.89e-61FFCP PHASE1:Hg19::chr18:8783586..8783597,+#_93614b595f7c54f4f4d9466d20a55bc4p2@CCDC165
4.89e-61FFCP PHASE2:Hg19::chr11:122733033..122733052,+#_93614b595f7c54f4f4d9466d20a55bc4p4@CRTAM
4.89e-61FFCP PHASE2:Hg19::chr14:60031159..60031181,-#_93614b595f7c54f4f4d9466d20a55bc4p1@ENST00000556936
4.89e-61FFCP PHASE2:Hg19::chr17:36720287..36720302,-#_93614b595f7c54f4f4d9466d20a55bc4p18@SRCIN1
4.89e-61FFCP PHASE1:Hg19::chr6:127533959..127533972,-#_93614b595f7c54f4f4d9466d20a55bc4p@chr6:127533959..127533972, -
4.89e-61FFCP PHASE2:Hg19::chr6:151198021..151198035,+#_93614b595f7c54f4f4d9466d20a55bc4p@chr6:151198021..151198035, +
4.89e-61FFCP PHASE1:Hg19::chr15:81489280..81489292,+#_93614b595f7c54f4f4d9466d20a55bc4p15@IL16
4.89e-61FFCP PHASE2:Hg19::chr20:45061746..45061763,-#_93614b595f7c54f4f4d9466d20a55bc4p4@ELMO2
4.89e-61FFCP PHASE1:Hg19::chr6:151198021..151198035,+#_93614b595f7c54f4f4d9466d20a55bc4p@chr6:151198021..151198035, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004732&oldid=3277683"