UBERON:0004733: Difference between revisions
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|located_in= | |located_in= | ||
|name=segmental subdivision of hindbrain | |name=segmental subdivision of hindbrain | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002028 | |part_of=UBERON:0002028 | ||
Latest revision as of 17:47, 12 September 2014
| Name: | segmental subdivision of hindbrain | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An organ segment that is part of a hindbrain [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"hindbrain segment" EXACT [FMA:61998] "segment of hindbrain" EXACT [FMA:61998] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0004732(segmental subdivision of nervous system),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0002028(hindbrain) |
Children
| is a: | UBERON:0001895 (metencephalon),UBERON:0005290 (myelencephalon) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
... further results Mouse (Mus musculus)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004733 (segmental subdivision of hindbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.71e-110 | FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_43c9a9266ae98add9f451c42669592ad | p@chr2:72381655..72381673, - |
| 1.71e-110 | FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_43c9a9266ae98add9f451c42669592ad | p@chr2:72381655..72381673, - |
| 5.84e-89 | FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_24c369a337a8724f2abb4ab28adf7111 | p1@SLC6A5 |
| 5.84e-89 | FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_24c369a337a8724f2abb4ab28adf7111 | p1@SLC6A5 |
| 2.65e-84 | FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_4aaba25060ed7b9a3b7db387d2348001 | p3@CRTAM |
| 2.65e-84 | FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_4aaba25060ed7b9a3b7db387d2348001 | p3@CRTAM |
| 3.05e-84 | FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_bba28ebae326f8ec936a56cfb2861b87 | p1@BARHL1 |
| 3.05e-84 | FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_bba28ebae326f8ec936a56cfb2861b87 | p1@BARHL1 |
| 4.43e-82 | FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_6cd4b6f06b14ee0b95aee38ba8a30cdf | p@chr6:152884391..152884402, - |
| 4.43e-82 | FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_6cd4b6f06b14ee0b95aee38ba8a30cdf | p@chr4:117873850..117873861, - |
| 4.43e-82 | FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_6cd4b6f06b14ee0b95aee38ba8a30cdf | p@chr6:152884391..152884402, - |
| 4.43e-82 | FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_6cd4b6f06b14ee0b95aee38ba8a30cdf | p@chr4:117873850..117873861, - |
| 6.69e-74 | FFCP PHASE2:Hg19::chr6:152884406..152884453,-#_d22b7e0131e316901c386b5861a52cb0 | p@chr6:152884406..152884453, - |
| 6.69e-74 | FFCP PHASE1:Hg19::chr6:152884406..152884453,-#_d22b7e0131e316901c386b5861a52cb0 | p@chr6:152884406..152884453, - |
| 1.11e-73 | FFCP PHASE2:Hg19::chr13:100311142..100311153,+#_0a12d14dae02220abaa0dd807efa4c98 | p@chr13:100311142..100311153, + |
| 1.11e-73 | FFCP PHASE1:Hg19::chr13:100311142..100311153,+#_0a12d14dae02220abaa0dd807efa4c98 | p@chr13:100311142..100311153, + |
| 4.59e-73 | FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_87b892b550f2c29366675eb6dbd240ab | p@chr10:130489605..130489614, - |
| 4.59e-73 | FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_87b892b550f2c29366675eb6dbd240ab | p@chr10:130489605..130489614, - |
| 3.5e-70 | FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_286729a93e475919d473258948e2367a | p9@TRPM3 |
| 3.5e-70 | FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_286729a93e475919d473258948e2367a | p9@TRPM3 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr11:43855489..43855503,-#_030c63c02ef096df639296aa17222785 | p1@ENST00000524643 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr5:161112715..161112736,+#_030c63c02ef096df639296aa17222785 | p1@GABRA6 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr11:43855489..43855503,-#_030c63c02ef096df639296aa17222785 | p1@ENST00000524643 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr5:161112715..161112736,+#_030c63c02ef096df639296aa17222785 | p1@GABRA6 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr3:147110022..147110050,-#_030c63c02ef096df639296aa17222785 | p8@ZIC4 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr3:147110022..147110050,-#_030c63c02ef096df639296aa17222785 | p8@ZIC4 |
| 1.45e-68 | FFCP PHASE2:Hg19::chr6:72922590..72922605,+#_54a966cdb8d126e179117bc02a1661d1 | p5@RIMS1 |
| 1.45e-68 | FFCP PHASE1:Hg19::chr6:72922590..72922605,+#_54a966cdb8d126e179117bc02a1661d1 | p5@RIMS1 |
| 1.67e-68 | FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_46bc872b8c69b83aa098ee995f6cda07 | p17@BDNF |
| 1.67e-68 | FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_46bc872b8c69b83aa098ee995f6cda07 | p17@BDNF |
| 6.16e-67 | FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_350d016ea3b5af23fa781af851140475 | p2@LOC100505835 |
| 6.16e-67 | FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_350d016ea3b5af23fa781af851140475 | p2@LOC100505835 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr5:161112968..161112988,+#_758f117b4fe5756c577d70faf0658cea | p3@GABRA6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr3:98519943..98519958,-#_758f117b4fe5756c577d70faf0658cea | p@chr3:98519943..98519958, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr1:16366392..16366411,-#_758f117b4fe5756c577d70faf0658cea | p@chr1:16366392..16366411, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:60049016..60049032,-#_758f117b4fe5756c577d70faf0658cea | p@chr14:60049016..60049032, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr18:8783586..8783597,+#_758f117b4fe5756c577d70faf0658cea | p2@CCDC165 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr20:45061746..45061763,-#_758f117b4fe5756c577d70faf0658cea | p4@ELMO2 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:72922614..72922626,+#_758f117b4fe5756c577d70faf0658cea | p19@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr5:161112968..161112988,+#_758f117b4fe5756c577d70faf0658cea | p3@GABRA6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_758f117b4fe5756c577d70faf0658cea | p29@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr20:39790925..39790940,+#_758f117b4fe5756c577d70faf0658cea | p@chr20:39790925..39790940, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_758f117b4fe5756c577d70faf0658cea | p22@CA10 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:588423..588441,-#_758f117b4fe5756c577d70faf0658cea | p@chr17:588423..588441, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr20:45061746..45061763,-#_758f117b4fe5756c577d70faf0658cea | p4@ELMO2 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr2:149835088..149835109,+#_758f117b4fe5756c577d70faf0658cea | p9@KIF5C |
| 5.11e-66 | FFCP PHASE1:Hg19::chr15:81489280..81489292,+#_758f117b4fe5756c577d70faf0658cea | p15@IL16 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:36720287..36720302,-#_758f117b4fe5756c577d70faf0658cea | p18@SRCIN1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:77582905..77582916,+#_758f117b4fe5756c577d70faf0658cea | p5@TMEM63C |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:52168958..52169000,+#_758f117b4fe5756c577d70faf0658cea | p27@FRMD6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:60049016..60049032,-#_758f117b4fe5756c577d70faf0658cea | p@chr14:60049016..60049032, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr11:122733033..122733052,+#_758f117b4fe5756c577d70faf0658cea | p4@CRTAM |
| 5.11e-66 | FFCP PHASE2:Hg19::chr5:161112654..161112669,+#_758f117b4fe5756c577d70faf0658cea | p2@GABRA6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr5:161112654..161112669,+#_758f117b4fe5756c577d70faf0658cea | p2@GABRA6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr1:16366392..16366411,-#_758f117b4fe5756c577d70faf0658cea | p@chr1:16366392..16366411, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr2:149835088..149835109,+#_758f117b4fe5756c577d70faf0658cea | p9@KIF5C |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:36720287..36720302,-#_758f117b4fe5756c577d70faf0658cea | p18@SRCIN1 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr20:39790925..39790940,+#_758f117b4fe5756c577d70faf0658cea | p@chr20:39790925..39790940, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr3:98519943..98519958,-#_758f117b4fe5756c577d70faf0658cea | p@chr3:98519943..98519958, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_758f117b4fe5756c577d70faf0658cea | p2@CU680380 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr18:8783586..8783597,+#_758f117b4fe5756c577d70faf0658cea | p2@CCDC165 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_758f117b4fe5756c577d70faf0658cea | p@chr17:72857611..72857619, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:127533959..127533972,-#_758f117b4fe5756c577d70faf0658cea | p@chr6:127533959..127533972, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_758f117b4fe5756c577d70faf0658cea | p@chr17:72857611..72857619, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr3:147125238..147125275,+#_758f117b4fe5756c577d70faf0658cea | p@chr3:147125238..147125275, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr18:8783637..8783650,+#_758f117b4fe5756c577d70faf0658cea | p@chr18:8783637..8783650, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr11:122733033..122733052,+#_758f117b4fe5756c577d70faf0658cea | p4@CRTAM |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:77582905..77582916,+#_758f117b4fe5756c577d70faf0658cea | p5@TMEM63C |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:34073743..34073761,-#_758f117b4fe5756c577d70faf0658cea | p1@GRM4 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_758f117b4fe5756c577d70faf0658cea | p11@RAB37 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_758f117b4fe5756c577d70faf0658cea | p4@AB384137 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_758f117b4fe5756c577d70faf0658cea | p4@AB384137 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_758f117b4fe5756c577d70faf0658cea | p22@CA10 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:72922614..72922626,+#_758f117b4fe5756c577d70faf0658cea | p19@RIMS1 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:127533978..127533993,-#_758f117b4fe5756c577d70faf0658cea | p@chr6:127533978..127533993, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_758f117b4fe5756c577d70faf0658cea | p29@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr3:147125238..147125275,+#_758f117b4fe5756c577d70faf0658cea | p@chr3:147125238..147125275, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_758f117b4fe5756c577d70faf0658cea | p1@KIAA1024 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:588423..588441,-#_758f117b4fe5756c577d70faf0658cea | p@chr17:588423..588441, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr15:81489280..81489292,+#_758f117b4fe5756c577d70faf0658cea | p15@IL16 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:60031159..60031181,-#_758f117b4fe5756c577d70faf0658cea | p1@ENST00000556936 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr18:8783637..8783650,+#_758f117b4fe5756c577d70faf0658cea | p@chr18:8783637..8783650, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:127533978..127533993,-#_758f117b4fe5756c577d70faf0658cea | p@chr6:127533978..127533993, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:60031159..60031181,-#_758f117b4fe5756c577d70faf0658cea | p1@ENST00000556936 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_758f117b4fe5756c577d70faf0658cea | p1@KIAA1024 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:127533959..127533972,-#_758f117b4fe5756c577d70faf0658cea | p@chr6:127533959..127533972, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_758f117b4fe5756c577d70faf0658cea | p2@CU680380 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:52168958..52169000,+#_758f117b4fe5756c577d70faf0658cea | p27@FRMD6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_758f117b4fe5756c577d70faf0658cea | p11@RAB37 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:34073743..34073761,-#_758f117b4fe5756c577d70faf0658cea | p1@GRM4 |
| 1.63e-65 | FFCP PHASE2:Hg19::chr10:62149532..62149539,-#_1709d994a1600306366719a08465f352 | p38@ANK3 |
| 1.63e-65 | FFCP PHASE1:Hg19::chr10:62149532..62149539,-#_1709d994a1600306366719a08465f352 | p38@ANK3 |
| 2.29e-65 | FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_be059c021453df33822336f206e8e556 | p@chrX:106692537..106692551, + |
| 2.29e-65 | FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_be059c021453df33822336f206e8e556 | p@chrX:106692537..106692551, + |
| 8.77e-62 | FFCP PHASE2:Hg19::chr7:153445213..153445251,+#_35a5c483d04241f61b3655c8954ac63b | p@chr7:153445213..153445251, + |
| 8.77e-62 | FFCP PHASE1:Hg19::chr7:153445213..153445251,+#_35a5c483d04241f61b3655c8954ac63b | p@chr7:153445213..153445251, + |
| 9.7e-62 | FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_dfe42176c26ac9037d569bdc6e4fa1d8 | p@chr9:8779377..8779397, - |
| 9.7e-62 | FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_dfe42176c26ac9037d569bdc6e4fa1d8 | p@chr9:8779377..8779397, - |
| 2.04e-59 | FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_acc1f077724e5f617d1d0e8b7062a2d3 | p1@TPH2 |
| 2.04e-59 | FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_acc1f077724e5f617d1d0e8b7062a2d3 | p1@TPH2 |
