UBERON:0004733: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=segmental subdivision of hindbrain | |name=segmental subdivision of hindbrain | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002028 | |part_of=UBERON:0002028 | ||
Latest revision as of 17:47, 12 September 2014
| Name: | segmental subdivision of hindbrain | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "An organ segment that is part of a hindbrain [Obol]." [OBOL:automatic] | |
| Xrefs: |
| |
| Synonyms: |
"hindbrain segment" EXACT [FMA:61998] "segment of hindbrain" EXACT [FMA:61998] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0004732(segmental subdivision of nervous system),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0002028(hindbrain) |
Children
| is a: | UBERON:0001895 (metencephalon),UBERON:0005290 (myelencephalon) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
... further results Mouse (Mus musculus)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004733 (segmental subdivision of hindbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
