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{{UBERON
{{UBERON
|id=UBERON:0004761
|alt_id=
|name=cartilaginous neurocranium
|namespace=
|def="the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [Wikipedia:Chondrocranium]
|xref=AAO:0000094;;AAO:0010153;;EHDAA:6031;;FMA:76621;;ncithesaurus:Chondrocranium;;SCTID:155540009;;XAO:0003059
|is_a=UBERON:0000075;;UBERON:0004120
|synonym="cartilaginous chondocranium" EXACT [];;"cartilaginous skull" RELATED [];;"cartiligionous skeletal structure of skull" EXACT [];;"chondocranium" RELATED [Wikipedia:Chondrocranium];;"embryonic chondocranium" RELATED [];;"neurocranium" RELATED SENSU []
|comment=note that in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain)
|comment=note that in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain)
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [Wikipedia:Chondrocranium]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0009617
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004761
|is_a=UBERON:0000075 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|name=cartilaginous neurocranium
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="cartilaginous chondocranium" EXACT [];;"cartilaginous skull" RELATED [];;"cartiligionous skeletal structure of skull" EXACT [];;"chondocranium" RELATED [Wikipedia:Chondrocranium];;"embryonic chondocranium" RELATED [];;"neurocranium" RELATED SENSU []
|union_of=
|xref=AAO:0000094;;AAO:0010153;;EHDAA:6031;;FMA:76621;;ncithesaurus:Chondrocranium;;SCTID:155540009;;XAO:0003059
}}
}}

Latest revision as of 17:47, 12 September 2014

Name:cartilaginous neurocranium
Namespace:FANTOM
Definition:"the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [Wikipedia:Chondrocranium]
Xrefs:
links:

AAO:0000094
AAO:0010153
EHDAA:6031
FMA:76621
ncithesaurus:Chondrocranium
SCTID:155540009

XAO:0003059
Synonyms: "cartilaginous chondocranium" EXACT []
"cartilaginous skull" RELATED []
"cartiligionous skeletal structure of skull" EXACT []
"chondocranium" RELATED [Wikipedia:Chondrocranium]
"embryonic chondocranium" RELATED []
"neurocranium" RELATED SENSU []
Comments:note that in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain)

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0009617(head paraxial mesoderm)



Children

develops from:UBERON:0001703 (neurocranium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004761 (cartilaginous neurocranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_a6c0a9c3e307680fdd2f482de3703576p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_a6c0a9c3e307680fdd2f482de3703576p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_a6c0a9c3e307680fdd2f482de3703576p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_a6c0a9c3e307680fdd2f482de3703576p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_a6c0a9c3e307680fdd2f482de3703576p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_a6c0a9c3e307680fdd2f482de3703576p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_a6c0a9c3e307680fdd2f482de3703576p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_a6c0a9c3e307680fdd2f482de3703576p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_a6c0a9c3e307680fdd2f482de3703576p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_a6c0a9c3e307680fdd2f482de3703576p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_a6c0a9c3e307680fdd2f482de3703576p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_a6c0a9c3e307680fdd2f482de3703576p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_a6c0a9c3e307680fdd2f482de3703576p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_a6c0a9c3e307680fdd2f482de3703576p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_a6c0a9c3e307680fdd2f482de3703576p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_a6c0a9c3e307680fdd2f482de3703576p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_a6c0a9c3e307680fdd2f482de3703576p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_a6c0a9c3e307680fdd2f482de3703576p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_a6c0a9c3e307680fdd2f482de3703576p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_a6c0a9c3e307680fdd2f482de3703576p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_a6c0a9c3e307680fdd2f482de3703576p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_a6c0a9c3e307680fdd2f482de3703576p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_a6c0a9c3e307680fdd2f482de3703576p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_a6c0a9c3e307680fdd2f482de3703576p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_a6c0a9c3e307680fdd2f482de3703576p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_a6c0a9c3e307680fdd2f482de3703576p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_a6c0a9c3e307680fdd2f482de3703576p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_a6c0a9c3e307680fdd2f482de3703576p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_a6c0a9c3e307680fdd2f482de3703576p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_a6c0a9c3e307680fdd2f482de3703576p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_a6c0a9c3e307680fdd2f482de3703576p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_a6c0a9c3e307680fdd2f482de3703576p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_a6c0a9c3e307680fdd2f482de3703576p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_a6c0a9c3e307680fdd2f482de3703576p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_a6c0a9c3e307680fdd2f482de3703576p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_a6c0a9c3e307680fdd2f482de3703576p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_a6c0a9c3e307680fdd2f482de3703576p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_a6c0a9c3e307680fdd2f482de3703576p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_a6c0a9c3e307680fdd2f482de3703576p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_a6c0a9c3e307680fdd2f482de3703576p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_a6c0a9c3e307680fdd2f482de3703576p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_a6c0a9c3e307680fdd2f482de3703576p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_a6c0a9c3e307680fdd2f482de3703576p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_a6c0a9c3e307680fdd2f482de3703576p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_a6c0a9c3e307680fdd2f482de3703576p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_a6c0a9c3e307680fdd2f482de3703576p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_a6c0a9c3e307680fdd2f482de3703576p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_a6c0a9c3e307680fdd2f482de3703576p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_a6c0a9c3e307680fdd2f482de3703576p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_a6c0a9c3e307680fdd2f482de3703576p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_a6c0a9c3e307680fdd2f482de3703576p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_a6c0a9c3e307680fdd2f482de3703576p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_a6c0a9c3e307680fdd2f482de3703576p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_a6c0a9c3e307680fdd2f482de3703576p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_a6c0a9c3e307680fdd2f482de3703576p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_a6c0a9c3e307680fdd2f482de3703576p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_a6c0a9c3e307680fdd2f482de3703576p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_a6c0a9c3e307680fdd2f482de3703576p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_a6c0a9c3e307680fdd2f482de3703576p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_a6c0a9c3e307680fdd2f482de3703576p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_a6c0a9c3e307680fdd2f482de3703576p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_a6c0a9c3e307680fdd2f482de3703576p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_a6c0a9c3e307680fdd2f482de3703576p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_a6c0a9c3e307680fdd2f482de3703576p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_a6c0a9c3e307680fdd2f482de3703576p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_a6c0a9c3e307680fdd2f482de3703576p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_a6c0a9c3e307680fdd2f482de3703576p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_a6c0a9c3e307680fdd2f482de3703576p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_a6c0a9c3e307680fdd2f482de3703576p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_a6c0a9c3e307680fdd2f482de3703576p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_a6c0a9c3e307680fdd2f482de3703576p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_a6c0a9c3e307680fdd2f482de3703576p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_a6c0a9c3e307680fdd2f482de3703576p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_a6c0a9c3e307680fdd2f482de3703576p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_a6c0a9c3e307680fdd2f482de3703576p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_a6c0a9c3e307680fdd2f482de3703576p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_a6c0a9c3e307680fdd2f482de3703576p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_a6c0a9c3e307680fdd2f482de3703576p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_a6c0a9c3e307680fdd2f482de3703576p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_a6c0a9c3e307680fdd2f482de3703576p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_a6c0a9c3e307680fdd2f482de3703576p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_a6c0a9c3e307680fdd2f482de3703576p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_a6c0a9c3e307680fdd2f482de3703576p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_a6c0a9c3e307680fdd2f482de3703576p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_a6c0a9c3e307680fdd2f482de3703576p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_a6c0a9c3e307680fdd2f482de3703576p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_a6c0a9c3e307680fdd2f482de3703576p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_a6c0a9c3e307680fdd2f482de3703576p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_a6c0a9c3e307680fdd2f482de3703576p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_a6c0a9c3e307680fdd2f482de3703576p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_a6c0a9c3e307680fdd2f482de3703576p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_a6c0a9c3e307680fdd2f482de3703576p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_a6c0a9c3e307680fdd2f482de3703576p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_a6c0a9c3e307680fdd2f482de3703576p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_a6c0a9c3e307680fdd2f482de3703576p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_a6c0a9c3e307680fdd2f482de3703576p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_a6c0a9c3e307680fdd2f482de3703576p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_a6c0a9c3e307680fdd2f482de3703576p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_a6c0a9c3e307680fdd2f482de3703576p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_a6c0a9c3e307680fdd2f482de3703576p@chr8:94180607..94180619, -

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