Personal tools

UBERON:0004808: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004808
|alt_id=
|name=gastrointestinal system epithelium
|namespace=
|def="An epithelium that is part of a digestive system [Obol]." [OBOL:automatic]
|xref=MA:0001520
|is_a=UBERON:0000483
|synonym="digestive system epithelial tissue" EXACT [OBOL:automatic];;"digestive system epithelium" EXACT [OBOL:automatic];;"epithelial tissue of digestive system" EXACT [OBOL:automatic];;"epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic];;"epithelium of digestive system" EXACT [OBOL:automatic];;"epithelium of gastrointestinal system" EXACT [OBOL:automatic];;"gastrointestinal system epithelial tissue" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium that is part of a digestive system [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004808
|is_a=UBERON:0000483
|is_obsolete=
|located_in=
|located_in=
|name=gastrointestinal system epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0005409
|part_of=UBERON:0005409
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="digestive system epithelial tissue" EXACT [OBOL:automatic];;"digestive system epithelium" EXACT [OBOL:automatic];;"epithelial tissue of digestive system" EXACT [OBOL:automatic];;"epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic];;"epithelium of digestive system" EXACT [OBOL:automatic];;"epithelium of gastrointestinal system" EXACT [OBOL:automatic];;"gastrointestinal system epithelial tissue" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0001520
}}
}}

Latest revision as of 17:48, 12 September 2014

Name:gastrointestinal system epithelium
Namespace:FANTOM
Definition:"An epithelium that is part of a digestive system [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0001520
Synonyms: "digestive system epithelial tissue" EXACT [OBOL:automatic]
"digestive system epithelium" EXACT [OBOL:automatic]
"epithelial tissue of digestive system" EXACT [OBOL:automatic]
"epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic]
"epithelium of digestive system" EXACT [OBOL:automatic]
"epithelium of gastrointestinal system" EXACT [OBOL:automatic]
"gastrointestinal system epithelial tissue" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000483(epithelium)
part_of:UBERON:0005409(gastrointestinal system)



Children

is a:UBERON:0001277 (intestinal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004808 (gastrointestinal system epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_6d7b9a458200da842cb9e5a676280659p@chr9:35801527..35801540, +
1.55e-98FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_6d7b9a458200da842cb9e5a676280659p@chr9:35801527..35801540, +
4.97e-77FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_73ac7970f57c024b92630d9944afe479p@chr8:122335239..122335244, +
4.97e-77FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_73ac7970f57c024b92630d9944afe479p@chr8:122335239..122335244, +
1.86e-71FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_2f0d2a78f34c13f8f6feba7ebd327eedp@chr17:57201412..57201418, -
1.86e-71FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_2f0d2a78f34c13f8f6feba7ebd327eedp@chr17:57201412..57201418, -
1.41e-68FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_ec6b2f284e76da4fcb3d7831ae27628ap@chr4:155434167..155434177, +
1.41e-68FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_ec6b2f284e76da4fcb3d7831ae27628ap@chr4:155434167..155434177, +
1.7e-67FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_e625ee1c72497c8468df17dc82b23820p@chr8:64192378..64192389, +
1.7e-67FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_e625ee1c72497c8468df17dc82b23820p@chr8:64192378..64192389, +
2.4e-66FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_559cbcb6a96759c394c0b719de935f00p@chr6:22919616..22919625, -
2.4e-66FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_559cbcb6a96759c394c0b719de935f00p@chr9:129830560..129830568, +
2.4e-66FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_559cbcb6a96759c394c0b719de935f00p@chr2:127873614..127873626, +
2.4e-66FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_559cbcb6a96759c394c0b719de935f00p1@ENST00000429014
2.4e-66FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_559cbcb6a96759c394c0b719de935f00p1@CYMP
2.4e-66FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_559cbcb6a96759c394c0b719de935f00p@chr18:7034928..7034943, -
2.4e-66FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_559cbcb6a96759c394c0b719de935f00p@chr2:127873614..127873626, +
2.4e-66FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_559cbcb6a96759c394c0b719de935f00p1@CYMP
2.4e-66FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_559cbcb6a96759c394c0b719de935f00p@chr13:46093155..46093164, +
2.4e-66FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_559cbcb6a96759c394c0b719de935f00p@chr9:129830560..129830568, +
2.4e-66FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_559cbcb6a96759c394c0b719de935f00p@chr18:7034928..7034943, -
2.4e-66FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_559cbcb6a96759c394c0b719de935f00p1@ENST00000429014
2.4e-66FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_559cbcb6a96759c394c0b719de935f00p@chr6:22919616..22919625, -
2.4e-66FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_559cbcb6a96759c394c0b719de935f00p@chr13:46093155..46093164, +
3.35e-66FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_1631bc9c0417e42225f9bd1438099491p@chrX:21849506..21849512, -
3.35e-66FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_1631bc9c0417e42225f9bd1438099491p@chr20:17691468..17691474, -
3.35e-66FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_1631bc9c0417e42225f9bd1438099491p@chrX:21849506..21849512, -
3.35e-66FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_1631bc9c0417e42225f9bd1438099491p@chr20:17691468..17691474, -
3.35e-66FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_1631bc9c0417e42225f9bd1438099491p@chr2:205409703..205409714, +
3.35e-66FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_1631bc9c0417e42225f9bd1438099491p16@ACOT7
3.35e-66FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_1631bc9c0417e42225f9bd1438099491p@chr2:205409703..205409714, +
3.35e-66FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_1631bc9c0417e42225f9bd1438099491p16@ACOT7
4.67e-66FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_19fa946e6528f56406a284ec147ace42p@chr11:89925073..89925074, +
4.67e-66FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_19fa946e6528f56406a284ec147ace42p@chr2:28340361..28340371, +
4.67e-66FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_19fa946e6528f56406a284ec147ace42p@chr2:28340361..28340371, +
4.67e-66FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_19fa946e6528f56406a284ec147ace42p@chr9:138591077..138591111, -
4.67e-66FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_19fa946e6528f56406a284ec147ace42p@chr11:89925073..89925074, +
4.67e-66FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_19fa946e6528f56406a284ec147ace42p@chr9:138591077..138591111, -
3.55e-65FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_4c81c540fa304761d09a59e4e626c8ebp@chr3:122215917..122215967, -
3.55e-65FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_4c81c540fa304761d09a59e4e626c8ebp@chr3:122215917..122215967, -
7.03e-65FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_b80ee1f9412e1603650977c49153c724p@chr2:143738263..143738267, +
7.03e-65FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_b80ee1f9412e1603650977c49153c724p@chr2:143738263..143738267, +
2.43e-61FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_630bbf9f85098ed12131340a758135bfp@chr5:135465906..135465912, +
2.43e-61FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_630bbf9f85098ed12131340a758135bfp@chr5:135465906..135465912, +
5.84e-61FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_1d1dd6db3da6465b08169eac199e1c0fp4@Leng9
5.84e-61FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_1d1dd6db3da6465b08169eac199e1c0fp4@Leng9
1.29e-60FFCP PHASE2:Mm9::chr7:4101821..4101832,-#_5df1a227872721df502c320240308479p5@Leng9
1.29e-60FFCP PHASE1:Mm9::chr7:4101821..4101832,-#_5df1a227872721df502c320240308479p5@Leng9
5.24e-58FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_7b57f8c7dc76ea922d9d2b907f169ba3p@chr12:86771033..86771037, -
5.24e-58FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_7b57f8c7dc76ea922d9d2b907f169ba3p@chr12:86771033..86771037, -
6.35e-57FFCP PHASE2:Mm9::chr5:145119593..145119596,+#_6ff9dbf6a622c3074937b267fa12de65p@chr5:145119593..145119596, +
6.35e-57FFCP PHASE1:Mm9::chr5:145119593..145119596,+#_6ff9dbf6a622c3074937b267fa12de65p@chr5:145119593..145119596, +
8.86e-57FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_5624e7bb4dd99c4c6cc66edf1c331cecp@chr13:49066571..49066574, -
8.86e-57FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_5624e7bb4dd99c4c6cc66edf1c331cecp@chr13:49066571..49066574, -
1.46e-56FFCP PHASE2:Mm9::chr11:96797681..96797709,-#_cd6aafeabc24433728e15fbde972f9c9p@chr11:96797681..96797709, -
1.46e-56FFCP PHASE1:Mm9::chr11:96797681..96797709,-#_cd6aafeabc24433728e15fbde972f9c9p@chr11:96797681..96797709, -
2.19e-56FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_d9533284a4cd86b236497f80b6a294ccp@chr18:36576247..36576252, -
2.19e-56FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_d9533284a4cd86b236497f80b6a294ccp@chr18:36576247..36576252, -
5.47e-56FFCP PHASE1:Mm9::chr9:66888939..66888949,+#_6dc84e10a11d848e3eade02abd4469d1p@chr9:66888939..66888949, +
5.47e-56FFCP PHASE2:Mm9::chr9:66888939..66888949,+#_6dc84e10a11d848e3eade02abd4469d1p@chr9:66888939..66888949, +
6.45e-56FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_f5d3a90deaee2a6ad2897f22e916a567p@chr17:46693370..46693378, +
6.45e-56FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_f5d3a90deaee2a6ad2897f22e916a567p@chr17:46693370..46693378, +
1.93e-53FFCP PHASE2:Mm9::chr7:52317191..52317193,+#_a47022cb0b8b35fc2e0b5e49412b4c31p@chr7:52317191..52317193, +
1.93e-53FFCP PHASE1:Mm9::chr7:52317191..52317193,+#_a47022cb0b8b35fc2e0b5e49412b4c31p@chr7:52317191..52317193, +
2.55e-53FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_a9eafdf5613f40ef1eeb3545f0d041f7p@chr5:135442713..135442733, +
2.55e-53FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_a9eafdf5613f40ef1eeb3545f0d041f7p@chr5:135442713..135442733, +
5.3e-53FFCP PHASE1:Mm9::chr2:38781010..38781017,+#_3619b8678a5374e673da894b44446879p@chr2:38781010..38781017, +
5.3e-53FFCP PHASE2:Mm9::chr2:38781010..38781017,+#_3619b8678a5374e673da894b44446879p@chr2:38781010..38781017, +
3.46e-52FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_f10ed4eb6886332d24d648950743f356p@chr10:80565428..80565433, +
3.46e-52FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_f10ed4eb6886332d24d648950743f356p@chr10:80565428..80565433, +
7.4e-52FFCP PHASE2:Mm9::chr11:35759012..35759018,+#_35b7907014e824904fe665c6ec297d80p@chr11:35759012..35759018, +
7.4e-52FFCP PHASE1:Mm9::chr11:35759012..35759018,+#_35b7907014e824904fe665c6ec297d80p@chr11:35759012..35759018, +
1.0e-51FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_ce462f648b3ecabec2808182268facefp@chr18:66636209..66636215, -
1.0e-51FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_ce462f648b3ecabec2808182268facefp@chr18:66636209..66636215, -
1.17e-51FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_0fe54cc0bba369179e0fc0bab46bace3p@chr16:78268076..78268083, -
1.17e-51FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_0fe54cc0bba369179e0fc0bab46bace3p@chr16:78268076..78268083, -
3.1e-50FFCP PHASE2:Hg19::chr7:87232406..87232409,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr7:87232406..87232409, -
3.1e-50FFCP PHASE1:Hg19::chr8:128418828..128418839,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr8:128418828..128418839, -
3.1e-50FFCP PHASE1:Hg19::chr1:78621016..78621042,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr1:78621016..78621042, +
3.1e-50FFCP PHASE2:Hg19::chr4:157174075..157174084,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr4:157174075..157174084, +
3.1e-50FFCP PHASE1:Hg19::chr16:55344418..55344442,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr16:55344418..55344442, +
3.1e-50FFCP PHASE1:Hg19::chr4:157174062..157174071,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr4:157174062..157174071, +
3.1e-50FFCP PHASE2:Hg19::chr1:118658073..118658082,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr1:118658073..118658082, -
3.1e-50FFCP PHASE1:Hg19::chr8:128118744..128118753,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr8:128118744..128118753, -
3.1e-50FFCP PHASE1:Hg19::chr13:28541425..28541439,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr13:28541425..28541439, -
3.1e-50FFCP PHASE1:Hg19::chr6:372660..372670,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr6:372660..372670, -
3.1e-50FFCP PHASE2:Hg19::chr7:141499716..141499722,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr7:141499716..141499722, +
3.1e-50FFCP PHASE1:Hg19::chr7:87232440..87232448,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr7:87232440..87232448, -
3.1e-50FFCP PHASE1:Hg19::chr1:19522690..19522704,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr1:19522690..19522704, -
3.1e-50FFCP PHASE2:Hg19::chr3:24797750..24797759,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr3:24797750..24797759, -
3.1e-50FFCP PHASE2:Hg19::chr13:28541442..28541451,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr13:28541442..28541451, -
3.1e-50FFCP PHASE1:Hg19::chr6:91774965..91774974,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr6:91774965..91774974, +
3.1e-50FFCP PHASE2:Hg19::chr3:139373728..139373733,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr3:139373728..139373733, +
3.1e-50FFCP PHASE2:Hg19::chr18:39550015..39550034,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr18:39550015..39550034, +
3.1e-50FFCP PHASE1:Hg19::chr1:163338283..163338286,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr1:163338283..163338286, +
3.1e-50FFCP PHASE1:Hg19::chr12:65277574..65277589,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p2@FLJ41278
3.1e-50FFCP PHASE2:Hg19::chr8:128691603..128691614,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr8:128691603..128691614, -
3.1e-50FFCP PHASE2:Hg19::chr13:110258158..110258170,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr13:110258158..110258170, -
3.1e-50FFCP PHASE1:Hg19::chr9:125898916..125898941,-#_18d04e2081c8a2d90b4f2bb22ad12fc5p14@STRBP
3.1e-50FFCP PHASE2:Hg19::chr6:5491081..5491106,+#_18d04e2081c8a2d90b4f2bb22ad12fc5p@chr6:5491081..5491106, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004808&oldid=3277695"