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{{UBERON
{{UBERON
|id=UBERON:0004813
|alt_id=
|name=seminiferous tubule epithelium
|namespace=
|def="The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]." [Wikipedia:Germinal_epithelium_(male)]
|xref=BTO:0001811;;EHDAA:8148;;FMA:19885;;GAID:401;;MA:0001748;;MESH:A.05.360.444.849.700.700;;ncithesaurus:Seminiferous_Epithelium;;RETIRED_EHDAA2:0002009;;VHOG:0000631
|is_a=UBERON:0001136;;UBERON:0004910
|synonym="epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic];;"epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic];;"epithelium of seminiferous tubule" EXACT [OBOL:automatic];;"epithelium of seminiferous tubule of testis" EXACT [OBOL:automatic];;"germinal epithelium (male)" EXACT [Wikipedia:Germinal_epithelium_(male)];;"male germinal epithelium" EXACT [Wikipedia:Germinal_epithelium_(male)];;"seminiferous epithelium" EXACT [BTO:0001811];;"seminiferous tubule epithelial tissue" EXACT [OBOL:automatic];;"testis germinal epithelium" EXACT [VHOG:0000631];;"wall of seminiferous tubule" EXACT [Wikipedia:Germinal_epithelium_(male)]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]." [Wikipedia:Germinal_epithelium_(male)]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004813
|is_a=UBERON:0001136 ;;UBERON:0004910
|is_obsolete=
|located_in=
|located_in=
|name=seminiferous tubule epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001343
|part_of=UBERON:0001343
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic];;"epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic];;"epithelium of seminiferous tubule" EXACT [OBOL:automatic];;"epithelium of seminiferous tubule of testis" EXACT [OBOL:automatic];;"germinal epithelium (male)" EXACT [Wikipedia:Germinal_epithelium_(male)];;"male germinal epithelium" EXACT [Wikipedia:Germinal_epithelium_(male)];;"seminiferous epithelium" EXACT [BTO:0001811];;"seminiferous tubule epithelial tissue" EXACT [OBOL:automatic];;"testis germinal epithelium" EXACT [VHOG:0000631];;"wall of seminiferous tubule" EXACT [Wikipedia:Germinal_epithelium_(male)]
|union_of=
|xref=BTO:0001811;;EHDAA:8148;;FMA:19885;;GAID:401;;MA:0001748;;MESH:A.05.360.444.849.700.700;;ncithesaurus:Seminiferous_Epithelium;;RETIRED_EHDAA2:0002009;;VHOG:0000631
}}
}}

Latest revision as of 17:48, 12 September 2014

Name:seminiferous tubule epithelium
Namespace:FANTOM
Definition:"The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]." [Wikipedia:Germinal_epithelium_(male)]
Xrefs:
links:

BTO:0001811
EHDAA:8148
FMA:19885
GAID:401
MA:0001748
MESH:A.05.360.444.849.700.700
ncithesaurus:Seminiferous_Epithelium
RETIRED_EHDAA2:0002009

VHOG:0000631
Synonyms: "epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic]
"epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic]
"epithelium of seminiferous tubule" EXACT [OBOL:automatic]
"epithelium of seminiferous tubule of testis" EXACT [OBOL:automatic]
"germinal epithelium (male)" EXACT [Wikipedia:Germinal_epithelium_(male)]
"male germinal epithelium" EXACT [Wikipedia:Germinal_epithelium_(male)]
"seminiferous epithelium" EXACT [BTO:0001811]
"seminiferous tubule epithelial tissue" EXACT [OBOL:automatic]
"testis germinal epithelium" EXACT [VHOG:0000631]
"wall of seminiferous tubule" EXACT [Wikipedia:Germinal_epithelium_(male)]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001136(mesothelium),UBERON:0004910(epithelium of male gonad)
part_of:UBERON:0001343(seminiferous tubule of testis)



Children

part of:CL:0002625 (seminiferous tubule epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004813 (seminiferous tubule epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_a7ee2476c1eaa3951449dbffa85453c9p26@BDNF
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_a7ee2476c1eaa3951449dbffa85453c9p26@BDNF
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_53b6cf1ca83b0465c517e8e38024dfcdp9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_53b6cf1ca83b0465c517e8e38024dfcdp43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_53b6cf1ca83b0465c517e8e38024dfcdp43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_53b6cf1ca83b0465c517e8e38024dfcdp9@RARRES1
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr19:54600897..54600899, +
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr3:193356854..193356864, +
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr13:53030077..53030083, -
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr3:193356854..193356864, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr3:170430340..170430344, +
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp7@C7orf63
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr2:9519086..9519101, +
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_f3b2f40910ec6ba6e7ba30fa35f1f2efp7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_f3b2f40910ec6ba6e7ba30fa35f1f2efp@chr8:47529304..47529311, -
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_ce99c681327849bdce1a895046a80659p@chr2:19551668..19551679, -
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_ce99c681327849bdce1a895046a80659p@chr2:19551668..19551679, -
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_f6567af0893b77bea993bb9f089f5e1bp@chr3:112931461..112931474, -
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_f6567af0893b77bea993bb9f089f5e1bp22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_f6567af0893b77bea993bb9f089f5e1bp21@EPS8
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_f6567af0893b77bea993bb9f089f5e1bp22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_f6567af0893b77bea993bb9f089f5e1bp@chr3:112931461..112931474, -
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_f6567af0893b77bea993bb9f089f5e1bp@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_f6567af0893b77bea993bb9f089f5e1bp@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_f6567af0893b77bea993bb9f089f5e1bp@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_f6567af0893b77bea993bb9f089f5e1bp21@EPS8
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_f6567af0893b77bea993bb9f089f5e1bp@chr2:72803155..72803204, -
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_076a2cc9e1b5da2a1d30b49229e60c29p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_076a2cc9e1b5da2a1d30b49229e60c29p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_076a2cc9e1b5da2a1d30b49229e60c29p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_076a2cc9e1b5da2a1d30b49229e60c29p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_076a2cc9e1b5da2a1d30b49229e60c29p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_076a2cc9e1b5da2a1d30b49229e60c29p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_076a2cc9e1b5da2a1d30b49229e60c29p38@PTK2
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_076a2cc9e1b5da2a1d30b49229e60c29p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_076a2cc9e1b5da2a1d30b49229e60c29p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_076a2cc9e1b5da2a1d30b49229e60c29p38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_076a2cc9e1b5da2a1d30b49229e60c29p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_076a2cc9e1b5da2a1d30b49229e60c29p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_076a2cc9e1b5da2a1d30b49229e60c29p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_076a2cc9e1b5da2a1d30b49229e60c29p@chr5:90830481..90830492, +
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_209cd6e07548beb64acca2febd54e758p8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_209cd6e07548beb64acca2febd54e758p8@TCF21
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_209cd6e07548beb64acca2febd54e758p@chr11:114173606..114173612, +
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_209cd6e07548beb64acca2febd54e758p@chr2:177009137..177009140, +
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_209cd6e07548beb64acca2febd54e758p@chr2:177009137..177009140, +
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_209cd6e07548beb64acca2febd54e758p@chr11:114173606..114173612, +
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_c7aa80b3e18aba5124fd7401744e1681p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_c7aa80b3e18aba5124fd7401744e1681p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_c7aa80b3e18aba5124fd7401744e1681p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_c7aa80b3e18aba5124fd7401744e1681p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_c7aa80b3e18aba5124fd7401744e1681p32@CREB3L2
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_c7aa80b3e18aba5124fd7401744e1681p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_c7aa80b3e18aba5124fd7401744e1681p31@ZNF331
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_c7aa80b3e18aba5124fd7401744e1681p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_c7aa80b3e18aba5124fd7401744e1681p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_c7aa80b3e18aba5124fd7401744e1681p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_c7aa80b3e18aba5124fd7401744e1681p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_c7aa80b3e18aba5124fd7401744e1681p32@CREB3L2
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_c7aa80b3e18aba5124fd7401744e1681p6@C2orf63
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_c7aa80b3e18aba5124fd7401744e1681p31@ZNF331
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_41c9d8f49bafc613edc67a032889cd1ap10@ESR2
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_41c9d8f49bafc613edc67a032889cd1ap@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_41c9d8f49bafc613edc67a032889cd1ap@chr12:5198350..5198359, +
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_41c9d8f49bafc613edc67a032889cd1ap11@EFCAB4A
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_41c9d8f49bafc613edc67a032889cd1ap@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_41c9d8f49bafc613edc67a032889cd1ap@chr4:103969123..103969127, -
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_41c9d8f49bafc613edc67a032889cd1ap@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_41c9d8f49bafc613edc67a032889cd1ap10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_41c9d8f49bafc613edc67a032889cd1ap@chr15:39420650..39420666, +
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_41c9d8f49bafc613edc67a032889cd1ap11@EFCAB4A
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_5acd5274028228b0759bc9871ec5faacp51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_5acd5274028228b0759bc9871ec5faacp1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_5acd5274028228b0759bc9871ec5faacp51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_5acd5274028228b0759bc9871ec5faacp3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_5acd5274028228b0759bc9871ec5faacp13@SOS2
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_5acd5274028228b0759bc9871ec5faacp1@LOC645638
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_5acd5274028228b0759bc9871ec5faacp13@SOS2
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_5acd5274028228b0759bc9871ec5faacp3@CACNA1H
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_686fd5f12671f3f9a56e9a4d8302f0edp@chr3:194214959..194214968, -
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_686fd5f12671f3f9a56e9a4d8302f0edp@chr3:194214959..194214968, -
9.91e-41FFCP PHASE2:Hg19::chr11:77282391..77282402,+#_abb0d359f7feb45d889780f918d5eafcp@chr11:77282391..77282402, +
9.91e-41FFCP PHASE1:Hg19::chr2:102604493..102604499,+#_abb0d359f7feb45d889780f918d5eafcp@chr2:102604493..102604499, +
9.91e-41FFCP PHASE2:Hg19::chr11:94822746..94822757,+#_abb0d359f7feb45d889780f918d5eafcp8@ENDOD1
9.91e-41FFCP PHASE2:Hg19::chr13:49549473..49549480,+#_abb0d359f7feb45d889780f918d5eafcp@chr13:49549473..49549480, +
9.91e-41FFCP PHASE2:Hg19::chr8:125193673..125193689,-#_abb0d359f7feb45d889780f918d5eafcp@chr8:125193673..125193689, -
9.91e-41FFCP PHASE2:Hg19::chr3:49139102..49139119,-#_abb0d359f7feb45d889780f918d5eafcp@chr3:49139102..49139119, -
9.91e-41FFCP PHASE2:Hg19::chr15:34522001..34522013,+#_abb0d359f7feb45d889780f918d5eafcp@chr15:34522001..34522013, +
9.91e-41FFCP PHASE1:Hg19::chr8:125193673..125193689,-#_abb0d359f7feb45d889780f918d5eafcp@chr8:125193673..125193689, -

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