UBERON:0004875: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=part_of or develops_from urogenital ridge? | |comment=part_of or develops_from urogenital ridge? | ||
|created_by= | |created_by= | ||
| | |def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0004876 | |develops_from=UBERON:0004876 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004875 | |||
|is_a=UBERON:0005423 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=nephrogenic cord | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord] | ||
|union_of= | |||
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003 | |||
}} | }} | ||
Latest revision as of 17:49, 12 September 2014
| Name: | nephrogenic cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] | ||
| Xrefs: |
| ||
| Synonyms: | "chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord] | ||
| Comments: | part_of or develops_from urogenital ridge? |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0004876(urogenital ridge) |
| part_of: | UBERON:0000922(embryo) |
Children
| part of: | UBERON:0005754 (rostral part of nephrogenic cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004875 (nephrogenic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42 | p@chr10:127470655..127470664, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76 | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76 | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7 | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7 | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585020..63585025, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p2@Eddm3b |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3ca | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3ca | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p10@PAX2 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr1:172416185..172416189, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:96014490..96014496,+#_2c808356ccd804cd36d69a04f78b05be | p@chr8:96014490..96014496, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:75866210..75866235,+#_2c808356ccd804cd36d69a04f78b05be | p@chr2:75866210..75866235, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:23683348..23683398,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:23683348..23683398, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26611214..26611227,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:26611214..26611227, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:165219453..165219469,-#_2c808356ccd804cd36d69a04f78b05be | p11@Prrx1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_2c808356ccd804cd36d69a04f78b05be | p@chr16:25752228..25752237, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:44319583..44319592,-#_2c808356ccd804cd36d69a04f78b05be | p@chr18:44319583..44319592, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378766..21378781,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21378766..21378781, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:134893699..134893708,+#_2c808356ccd804cd36d69a04f78b05be | p@chr4:134893699..134893708, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101959282..101959299,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:101959282..101959299, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:92995710..92995753,+#_2c808356ccd804cd36d69a04f78b05be | p@chr16:92995710..92995753, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35651764..35651782,-#_2c808356ccd804cd36d69a04f78b05be | p2@9230110F15Rik |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:112721323..112721328,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:112721323..112721328, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:113585714..113585722,-#_2c808356ccd804cd36d69a04f78b05be | p@chr8:113585714..113585722, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:39707572..39707583,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:39707572..39707583, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:116901482..116901494,-#_2c808356ccd804cd36d69a04f78b05be | p2@ENSMUST00000152401 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:72756032..72756041,-#_2c808356ccd804cd36d69a04f78b05be | p@chr15:72756032..72756041, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:22061771..22061777,-#_2c808356ccd804cd36d69a04f78b05be | p3@Gm6040, p3@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379261..21379264,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21379261..21379264, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:87936213..87936218,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:87936213..87936218, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:105797824..105797838,-#_2c808356ccd804cd36d69a04f78b05be | p13@Cyb561 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:63611201..63611210,+#_2c808356ccd804cd36d69a04f78b05be | p@chr14:63611201..63611210, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164499572..164499580,-#_2c808356ccd804cd36d69a04f78b05be | p2@Wfdc11 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:52608712..52608739,+#_2c808356ccd804cd36d69a04f78b05be | p11@Arhgef40 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379107..21379136,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21379107..21379136, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:56515486..56515496,+#_2c808356ccd804cd36d69a04f78b05be | p@chr10:56515486..56515496, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26611214..26611227,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:26611214..26611227, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:75798097..75798101,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:75798097..75798101, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:109379335..109379338,+#_2c808356ccd804cd36d69a04f78b05be | p21@Pgap2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:130496286..130496293,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:130496286..130496293, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:66521865..66521876,+#_2c808356ccd804cd36d69a04f78b05be | p@chr14:66521865..66521876, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:35585507..35585517,-#_2c808356ccd804cd36d69a04f78b05be | p4@Gm17727 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:25349414..25349424,-#_2c808356ccd804cd36d69a04f78b05be | p5@Lcn12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:73221016..73221031,+#_2c808356ccd804cd36d69a04f78b05be | p@chr17:73221016..73221031, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:192816674..192816714,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:192816674..192816714, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:35657557..35657582,-#_2c808356ccd804cd36d69a04f78b05be | p2@Gm3428 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:25348986..25348999,-#_2c808356ccd804cd36d69a04f78b05be | p4@Lcn12 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26731771..26731780,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:26731771..26731780, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:66589365..66589371,+#_2c808356ccd804cd36d69a04f78b05be | p19@Clu |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:105797824..105797838,-#_2c808356ccd804cd36d69a04f78b05be | p13@Cyb561 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19142604..19142612,+#_2c808356ccd804cd36d69a04f78b05be | p@chr8:19142604..19142612, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379477..31379481,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:31379477..31379481, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:52608712..52608739,+#_2c808356ccd804cd36d69a04f78b05be | p11@Arhgef40 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:105313229..105313234,-#_2c808356ccd804cd36d69a04f78b05be | p17@Capn5 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:155698166..155698174,-#_2c808356ccd804cd36d69a04f78b05be | p@chr1:155698166..155698174, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:23683348..23683398,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:23683348..23683398, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:50280181..50280192,+#_2c808356ccd804cd36d69a04f78b05be | p@chrX:50280181..50280192, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:75293847..75293851,+#_2c808356ccd804cd36d69a04f78b05be | p@chr7:75293847..75293851, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:22547027..22547063,+#_2c808356ccd804cd36d69a04f78b05be | p@chr16:22547027..22547063, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:126604677..126604701,-#_2c808356ccd804cd36d69a04f78b05be | p@chr8:126604677..126604701, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:75347689..75347703,+#_2c808356ccd804cd36d69a04f78b05be | p@chr15:75347689..75347703, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26704579..26704582,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:26704579..26704582, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:151927980..151927988,+#_2c808356ccd804cd36d69a04f78b05be | p@chr7:151927980..151927988, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101959159..101959163,+#_2c808356ccd804cd36d69a04f78b05be | p@chr11:101959159..101959163, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90155923..90155932,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:90155923..90155932, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378968..21378988,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21378968..21378988, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:33600466..33600491,-#_2c808356ccd804cd36d69a04f78b05be | p@chr4:33600466..33600491, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:16664708..16664723,+#_2c808356ccd804cd36d69a04f78b05be | p@chr12:16664708..16664723, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51734060..51734066,+#_2c808356ccd804cd36d69a04f78b05be | p5@Eddm3b |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164434346..164434353,-#_2c808356ccd804cd36d69a04f78b05be | p@chr2:164434346..164434353, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21378296..21378303,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21378296..21378303, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:33600466..33600491,-#_2c808356ccd804cd36d69a04f78b05be | p@chr4:33600466..33600491, - |
