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{{UBERON
{{UBERON
|id=UBERON:0005177
|alt_id=
|name=trunk organ
|namespace=
|def="An organ that is part of a trunk [Obol]." [OBOL:automatic]
|xref=MA:0000516
|is_a=UBERON:0000062
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ that is part of a trunk [Obol]." [OBOL:automatic]
|subset=organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005177
|is_a=UBERON:0000062
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=trunk region element
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002100
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym=
|union_of=
|xref=MA:0000516
}}
}}

Latest revision as of 17:51, 12 September 2014

Name:trunk region element
Namespace:FANTOM
Definition:"An organ that is part of a trunk [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000516
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ)
part_of:UBERON:0002100(trunk)



Children

is a:UBERON:0001774 (muscle of trunk),UBERON:0002075 (viscus),UBERON:0005173 (abdominal segment element),UBERON:0005181 (thoracic segment organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005177 (trunk region element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.98e-32FFCP PHASE2:Mm9::chr2:147872790..147872821,-#_00b03d8e2fb683e3ba81eb270d4c252ap2@Foxa2
5.98e-32FFCP PHASE1:Mm9::chr2:147872790..147872821,-#_00b03d8e2fb683e3ba81eb270d4c252ap2@Foxa2
1.72e-31FFCP PHASE2:Hg19::chr17:202579..202625,-#_a3f03236e752063610fdbfbe084a5f5bp1@RPH3AL
1.72e-31FFCP PHASE1:Hg19::chr17:202579..202625,-#_a3f03236e752063610fdbfbe084a5f5bp1@RPH3AL
2.24e-30FFCP PHASE2:Hg19::chr16:57831685..57831697,-#_061adbc1390d3cd645004e111b22f6ffp7@KIFC3
2.24e-30FFCP PHASE1:Hg19::chr16:57831685..57831697,-#_061adbc1390d3cd645004e111b22f6ffp7@KIFC3
2.21e-28FFCP PHASE1:Mm9::chr10:127188729..127188740,-#_9bcf352d7d79a09271beed583bf3aa0dp3@Gpr182
2.21e-28FFCP PHASE2:Mm9::chr10:127188729..127188740,-#_9bcf352d7d79a09271beed583bf3aa0dp3@Gpr182
3.51e-28FFCP PHASE2:Mm9::chr2:3031492..3031497,+#_69b3ec22d9a6b4627565cf35193a7dfep3@Fam171a1
3.51e-28FFCP PHASE1:Mm9::chr2:3031492..3031497,+#_69b3ec22d9a6b4627565cf35193a7dfep3@Fam171a1
7.45e-28FFCP PHASE2:Hg19::chr10:99344428..99344441,+#_4aea1130e743db39ed2f6fe9f107abedp5@PI4K2A
7.45e-28FFCP PHASE1:Hg19::chr10:99344428..99344441,+#_4aea1130e743db39ed2f6fe9f107abedp5@PI4K2A
2.25e-27FFCP PHASE1:Mm9::chr19:46647912..46647926,+#_a6e320adcd9ff1153dbfa538fead4363p2@Sfxn2
2.25e-27FFCP PHASE2:Mm9::chr19:46647912..46647926,+#_a6e320adcd9ff1153dbfa538fead4363p2@Sfxn2
4.68e-27FFCP PHASE1:Mm9::chr19:44061023..44061034,-#_e4ba73738f7bcbe30c9df5ff90b3dc06p5@Cpn1
4.68e-27FFCP PHASE2:Mm9::chr19:44061023..44061034,-#_e4ba73738f7bcbe30c9df5ff90b3dc06p5@Cpn1
5.69e-27FFCP PHASE2:Mm9::chr19:34821713..34821741,-#_512a6bda0f83ec48fcc52fde047a6cdap4@Slc16a12
5.69e-27FFCP PHASE1:Mm9::chr19:34821713..34821741,-#_512a6bda0f83ec48fcc52fde047a6cdap4@Slc16a12
1.67e-26FFCP PHASE2:Mm9::chr15:96850371..96850403,-#_f7a6d78789de778337eef94b20416cd6p@chr15:96850371..96850403, -
1.67e-26FFCP PHASE1:Mm9::chr15:96850371..96850403,-#_f7a6d78789de778337eef94b20416cd6p@chr15:96850371..96850403, -
1.86e-26FFCP PHASE2:Mm9::chr18:65185637..65185658,+#_38401c1a5f05ccc3bf5f8c0896349f9dp19@Nedd4l
1.86e-26FFCP PHASE1:Mm9::chr18:65185637..65185658,+#_38401c1a5f05ccc3bf5f8c0896349f9dp19@Nedd4l
2.95e-26FFCP PHASE1:Mm9::chr5:97168683..97168705,-#_5d8a612544dbefde48d9e8d499aabfa4p@chr5:97168683..97168705, -
2.95e-26FFCP PHASE2:Mm9::chr5:97168683..97168705,-#_5d8a612544dbefde48d9e8d499aabfa4p@chr5:97168683..97168705, -
3.51e-26FFCP PHASE1:Mm9::chr16:45953678..45953716,-#_7092e23007895e69095d274a64e84fbdp3@Phldb2
3.51e-26FFCP PHASE2:Mm9::chr16:45953678..45953716,-#_7092e23007895e69095d274a64e84fbdp3@Phldb2
8.11e-26FFCP PHASE2:Mm9::chr7:31900246..31900327,-#_45630e6dc7c2e49cbd1478175e258d43p1@Hpn
8.11e-26FFCP PHASE1:Mm9::chr7:31900246..31900327,-#_45630e6dc7c2e49cbd1478175e258d43p1@Hpn
1.14e-25FFCP PHASE1:Mm9::chr8:97498604..97498621,+#_453010886acaf741aea9e345c53c48b2p@chr8:97498604..97498621, +
1.14e-25FFCP PHASE2:Mm9::chr8:97498604..97498621,+#_453010886acaf741aea9e345c53c48b2p@chr8:97498604..97498621, +
1.22e-25FFCP PHASE2:Hg19::chr12:53298841..53298867,-#_e72a0dfa505ab40ffe7d58323494b994p1@KRT8
1.22e-25FFCP PHASE1:Hg19::chr12:53298841..53298867,-#_e72a0dfa505ab40ffe7d58323494b994p1@KRT8
1.49e-25FFCP PHASE2:Mm9::chr19:44061042..44061051,-#_9e238798abd906ed69b563f0ed4dbf3ep7@Cpn1
1.49e-25FFCP PHASE1:Mm9::chr19:44061042..44061051,-#_9e238798abd906ed69b563f0ed4dbf3ep7@Cpn1
2.34e-25FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_27eb40be8dc35100ca0121401099fca0p2@SEPT9
2.34e-25FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_27eb40be8dc35100ca0121401099fca0p2@SEPT9
3.45e-25FFCP PHASE1:Mm9::chr12:77356440..77356459,+#_5b5ed25de1007f1b6871855eb76df5d9p4@Mthfd1
3.45e-25FFCP PHASE2:Mm9::chr12:77356440..77356459,+#_5b5ed25de1007f1b6871855eb76df5d9p4@Mthfd1
7.38e-25FFCP PHASE2:Mm9::chr19:44060891..44060902,-#_2db5e150f045984b96346030e3560feap2@Cpn1
7.38e-25FFCP PHASE1:Mm9::chr19:44060891..44060902,-#_2db5e150f045984b96346030e3560feap2@Cpn1
8.06e-25FFCP PHASE2:Mm9::chr18:44761374..44761391,-#_d7cf22961d496f21c4b5f51a5063b712p@chr18:44761374..44761391, -
8.06e-25FFCP PHASE1:Mm9::chr18:44761374..44761391,-#_d7cf22961d496f21c4b5f51a5063b712p@chr18:44761374..44761391, -
8.89e-25FFCP PHASE1:Mm9::chr11:49423199..49423230,+#_67e27a7637ca112b0d4ca8b453d08182p1@Flt4
8.89e-25FFCP PHASE2:Mm9::chr11:49423199..49423230,+#_67e27a7637ca112b0d4ca8b453d08182p1@Flt4
1.1e-24FFCP PHASE1:Hg19::chr20:42187656..42187673,+#_2297e7fcbab6bc73ea5aee41c013fc68p2@SGK2
1.1e-24FFCP PHASE2:Hg19::chr20:42187656..42187673,+#_2297e7fcbab6bc73ea5aee41c013fc68p2@SGK2
1.16e-24FFCP PHASE2:Mm9::chr11:83664365..83664383,+#_bf76436cf8811b59680496459daf39a6p1@Hnf1b
1.16e-24FFCP PHASE1:Mm9::chr11:83664365..83664383,+#_bf76436cf8811b59680496459daf39a6p1@Hnf1b
1.32e-24FFCP PHASE2:Mm9::chr19:34821811..34821825,-#_c19c34138a41ae9a1b0e300c07c7cb93p2@Slc16a12
1.32e-24FFCP PHASE1:Mm9::chr19:34821811..34821825,-#_c19c34138a41ae9a1b0e300c07c7cb93p2@Slc16a12
2.32e-24FFCP PHASE2:Mm9::chr10:86984699..86984722,+#_39453e6fcfcdda2f6f38831cac122a88p2@Pah
2.32e-24FFCP PHASE1:Mm9::chr10:86984699..86984722,+#_39453e6fcfcdda2f6f38831cac122a88p2@Pah
2.4e-24FFCP PHASE2:Mm9::chr10:70644765..70644806,-#_aa9c04f8978828b3460d05a9de0d3a96p1@C730027H18Rik
2.4e-24FFCP PHASE1:Mm9::chr10:70644765..70644806,-#_aa9c04f8978828b3460d05a9de0d3a96p1@C730027H18Rik
3.11e-24FFCP PHASE1:Mm9::chr4:144483085..144483096,+#_63c3cf65a3e98a5d0076f14c0978509ap12@Dhrs3
3.11e-24FFCP PHASE2:Mm9::chr4:144483085..144483096,+#_63c3cf65a3e98a5d0076f14c0978509ap12@Dhrs3
3.16e-24FFCP PHASE2:Mm9::chr19:34821684..34821709,-#_3c8139c85d45520f9012f7bcafb38fc6p5@Slc16a12
3.16e-24FFCP PHASE1:Mm9::chr19:34821684..34821709,-#_3c8139c85d45520f9012f7bcafb38fc6p5@Slc16a12
3.17e-24FFCP PHASE2:Mm9::chr8:97498586..97498600,+#_48fe8522b0ac140b219769bdc348070dp@chr8:97498586..97498600, +
3.17e-24FFCP PHASE1:Mm9::chr8:97498586..97498600,+#_48fe8522b0ac140b219769bdc348070dp@chr8:97498586..97498600, +
3.27e-24FFCP PHASE1:Mm9::chr6:21802523..21802540,-#_f06d575aef5ea2b28a45b0705808e13ep2@Tspan12
3.27e-24FFCP PHASE2:Mm9::chr6:21802523..21802540,-#_f06d575aef5ea2b28a45b0705808e13ep2@Tspan12
3.68e-24FFCP PHASE2:Mm9::chr11:83699177..83699208,+#_859cafe9ce046be4969a751c606ae148p@chr11:83699177..83699208, +
3.68e-24FFCP PHASE1:Mm9::chr11:83699177..83699208,+#_859cafe9ce046be4969a751c606ae148p@chr11:83699177..83699208, +
4.35e-24FFCP PHASE1:Hg19::chr10:101690650..101690683,-#_a3659c1c9613fb1271376fb69614c589p2@DNMBP
4.35e-24FFCP PHASE2:Hg19::chr10:101690650..101690683,-#_a3659c1c9613fb1271376fb69614c589p2@DNMBP
4.5e-24FFCP PHASE1:Hg19::chr1:55331310..55331365,-#_4f284a43613a01b7b9bd9e342a290d45p3@DHCR24
4.5e-24FFCP PHASE2:Hg19::chr1:55331310..55331365,-#_4f284a43613a01b7b9bd9e342a290d45p3@DHCR24
5.56e-24FFCP PHASE1:Mm9::chr12:77356196..77356226,+#_71d08788e01abfd958928d2135b01ae4p6@Mthfd1
5.56e-24FFCP PHASE2:Mm9::chr12:77356196..77356226,+#_71d08788e01abfd958928d2135b01ae4p6@Mthfd1
5.82e-24FFCP PHASE1:Mm9::chr12:77356231..77356244,+#_b47af7e0791a87d36a3daee97d2f0c69p2@Mthfd1
5.82e-24FFCP PHASE2:Mm9::chr12:77356231..77356244,+#_b47af7e0791a87d36a3daee97d2f0c69p2@Mthfd1
5.89e-24FFCP PHASE1:Mm9::chr4:129255765..129255776,-#_90a266a5a954d6f089a53334c946315ep2@Fam167b
5.89e-24FFCP PHASE2:Mm9::chr4:129255765..129255776,-#_90a266a5a954d6f089a53334c946315ep2@Fam167b
1.2e-23FFCP PHASE1:Mm9::chr1:89470480..89470509,-#_116823d3d71f84868fce958e1d1bb726p3@Ngef
1.2e-23FFCP PHASE2:Mm9::chr1:89470480..89470509,-#_116823d3d71f84868fce958e1d1bb726p3@Ngef
1.32e-23FFCP PHASE1:Mm9::chr1:20608054..20608071,-#_1ac5f21164f43c6d78db8fc4100d1759p2@Pkhd1
1.32e-23FFCP PHASE2:Mm9::chr1:20608054..20608071,-#_1ac5f21164f43c6d78db8fc4100d1759p2@Pkhd1
2.33e-23FFCP PHASE1:Mm9::chr8:108659441..108659470,+#_785b26b2dda30ce572c17826425554efp2@ENSMUST00000140509
2.33e-23FFCP PHASE2:Mm9::chr8:108659441..108659470,+#_785b26b2dda30ce572c17826425554efp2@ENSMUST00000140509
2.49e-23FFCP PHASE2:Mm9::chr11:83664219..83664262,-#_f2c610e27629b6a833cd0d638334511fp@chr11:83664219..83664262, -
2.49e-23FFCP PHASE1:Mm9::chr11:83664219..83664262,-#_f2c610e27629b6a833cd0d638334511fp@chr11:83664219..83664262, -
2.81e-23FFCP PHASE2:Hg19::chr1:204183071..204183152,-#_24c488eb2809439f393bdad4e6c800e5p1@GOLT1A
2.81e-23FFCP PHASE1:Hg19::chr1:204183071..204183152,-#_24c488eb2809439f393bdad4e6c800e5p1@GOLT1A
2.84e-23FFCP PHASE1:Hg19::chr5:176513868..176513893,+#_44d8031e3e4992d605f87df704797ca1p2@FGFR4
2.84e-23FFCP PHASE2:Hg19::chr5:176513868..176513893,+#_44d8031e3e4992d605f87df704797ca1p2@FGFR4
3.55e-23FFCP PHASE2:Mm9::chr19:38199748..38199796,-#_58d90b2593f64afbd67f123d77839c69p2@Rbp4
3.55e-23FFCP PHASE1:Mm9::chr19:38199748..38199796,-#_58d90b2593f64afbd67f123d77839c69p2@Rbp4
3.6e-23FFCP PHASE1:Hg19::chr7:5461523..5461542,-#_9f29208890fd9affed1f9dab129b84b5p7@TNRC18
3.6e-23FFCP PHASE2:Hg19::chr7:5461523..5461542,-#_9f29208890fd9affed1f9dab129b84b5p7@TNRC18
3.85e-23FFCP PHASE2:Mm9::chr10:127188763..127188793,-#_49c6f884c6b6f2074afb7f29181a5f66p1@Gpr182
3.85e-23FFCP PHASE1:Mm9::chr10:127188763..127188793,-#_49c6f884c6b6f2074afb7f29181a5f66p1@Gpr182
4.04e-23FFCP PHASE1:Mm9::chr19:44060596..44060610,-#_16fac32c205a21a86229399a2d9bba91p@chr19:44060596..44060610, -
4.04e-23FFCP PHASE2:Mm9::chr19:44060596..44060610,-#_16fac32c205a21a86229399a2d9bba91p@chr19:44060596..44060610, -
4.18e-23FFCP PHASE1:Mm9::chr12:58298298..58298317,-#_a04df015a459ab51d75c934ac289a17bp3@Slc25a21
4.18e-23FFCP PHASE2:Mm9::chr12:58298298..58298317,-#_a04df015a459ab51d75c934ac289a17bp3@Slc25a21
4.63e-23FFCP PHASE2:Mm9::chr15:10644594..10644636,+#_9c24ecca794da6ae4476e99a12bf53dbp1@4930556M19Rik
4.63e-23FFCP PHASE1:Mm9::chr15:10644594..10644636,+#_9c24ecca794da6ae4476e99a12bf53dbp1@4930556M19Rik
6.26e-23FFCP PHASE2:Mm9::chr19:34821781..34821803,-#_e50aba93d27ee37de66a01986d549d28p3@Slc16a12
6.26e-23FFCP PHASE1:Mm9::chr19:34821781..34821803,-#_e50aba93d27ee37de66a01986d549d28p3@Slc16a12

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