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{{UBERON
{{UBERON
|id=UBERON:0005256
|alt_id=
|name=trunk mesenchyme
|namespace=
|def=
|xref=EFO:0003485;;EHDAA:377;;EHDAA2:0002092;;EMAPA:16177;;VHOG:0000281;;ZFA:0000081
|is_a=UBERON:0003104
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005256
|is_a=UBERON:0003104 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002100
|name=trunk mesenchyme
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0002100;;UBERON:0000922;;UBERON:0002100;;UBERON:0009142
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=vertebrate_core
|synonym=
|union_of=
|xref=EFO:0003485;;EHDAA2:0002092;;EHDAA:377;;EMAPA:16177;;TAO:0000081;;VHOG:0000281;;ZFA:0000081
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:trunk mesenchyme
Namespace:FANTOM
Xrefs:
links:

EFO:0003485
EHDAA2:0002092
EHDAA:377
EMAPA:16177
TAO:0000081
VHOG:0000281

ZFA:0000081
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003104(mesenchyme),UBERON:0005291(embryonic tissue)
part_of:UBERON:0000922(embryo),UBERON:0002100(trunk),UBERON:0000922(embryo),UBERON:0002100(trunk),UBERON:0009142(entire embryonic mesenchyme)



Children

is a:UBERON:0002062 (endocardial cushion),UBERON:0009618 (trunk paraxial mesoderm)
part of:UBERON:0003064 (intermediate mesoderm),UBERON:0009618 (trunk paraxial mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005256 (trunk mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.85e-34FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_297845d3c8a7ff0d0c2af35574649541p@chr5:90897694..90897705, +
8.85e-34FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_297845d3c8a7ff0d0c2af35574649541p@chr5:90897694..90897705, +
1.18e-33FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_09a70fcdf3caec4c1d28084971e04180p@chr19:25169885..25169900, +
1.18e-33FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_09a70fcdf3caec4c1d28084971e04180p@chr19:25169885..25169900, +
1.31e-33FFCP PHASE1:Mm9::chr10:88996274..88996286,-#_dbc17f98e06f8a0f2b29e3207b463f89p4@Nr1h4
1.31e-33FFCP PHASE2:Mm9::chr10:88996274..88996286,-#_dbc17f98e06f8a0f2b29e3207b463f89p4@Nr1h4
2.01e-33FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_2034b7dc59e46243961a1ceed4d8c571p6@Insc
2.01e-33FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_2034b7dc59e46243961a1ceed4d8c571p2@uc009nzu.1
2.01e-33FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_2034b7dc59e46243961a1ceed4d8c571p6@Insc
2.01e-33FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_2034b7dc59e46243961a1ceed4d8c571p2@uc009nzu.1
1.52e-32FFCP PHASE2:Mm9::chr17:12588483..12588503,+#_9054f38e81167f62a9894c2c7dcc3913p@chr17:12588483..12588503, +
1.52e-32FFCP PHASE1:Mm9::chr17:12588483..12588503,+#_9054f38e81167f62a9894c2c7dcc3913p@chr17:12588483..12588503, +
2.21e-32FFCP PHASE2:Mm9::chr17:32822530..32822541,+#_23acca637a439a19f0fa5129f2bc9a1fp2@Cyp4f15
2.21e-32FFCP PHASE1:Mm9::chr17:32822530..32822541,+#_23acca637a439a19f0fa5129f2bc9a1fp2@Cyp4f15
6.2e-32FFCP PHASE1:Mm9::chr13:94407586..94407604,-#_78ca98627505bce798f8bd86fa26c1c0p5@Bhmt
6.2e-32FFCP PHASE2:Mm9::chr13:94407586..94407604,-#_78ca98627505bce798f8bd86fa26c1c0p5@Bhmt
8.94e-32FFCP PHASE2:Mm9::chr1:162917234..162917248,+#_adc3f0acb37b1be9376f3c98af7a2148p@chr1:162917234..162917248, +
8.94e-32FFCP PHASE1:Mm9::chr1:162917234..162917248,+#_adc3f0acb37b1be9376f3c98af7a2148p@chr1:162917234..162917248, +
1.01e-31FFCP PHASE1:Mm9::chr9:110892216..110892232,-#_5fae3a29782b3aa3c45758f0fff208f4p1@Rtp3
1.01e-31FFCP PHASE2:Mm9::chr9:110892216..110892232,-#_5fae3a29782b3aa3c45758f0fff208f4p1@Rtp3
1.34e-31FFCP PHASE2:Mm9::chr3:19885632..19885643,+#_3f4377175d2ffc09cd9261b4a7153950p@chr3:19885632..19885643, +
1.34e-31FFCP PHASE1:Mm9::chr16:22894900..22894910,+#_3f4377175d2ffc09cd9261b4a7153950p@chr16:22894900..22894910, +
1.34e-31FFCP PHASE2:Mm9::chr12:105004018..105004046,-#_3f4377175d2ffc09cd9261b4a7153950p@chr12:105004018..105004046, -
1.34e-31FFCP PHASE2:Mm9::chr16:22894900..22894910,+#_3f4377175d2ffc09cd9261b4a7153950p@chr16:22894900..22894910, +
1.34e-31FFCP PHASE2:Mm9::chr6:128436166..128436185,-#_3f4377175d2ffc09cd9261b4a7153950p@chr6:128436166..128436185, -
1.34e-31FFCP PHASE2:Mm9::chr16:22898981..22898988,-#_3f4377175d2ffc09cd9261b4a7153950p@chr16:22898981..22898988, -
1.34e-31FFCP PHASE1:Mm9::chr3:19885632..19885643,+#_3f4377175d2ffc09cd9261b4a7153950p@chr3:19885632..19885643, +
1.34e-31FFCP PHASE1:Mm9::chr2:10041210..10041222,-#_3f4377175d2ffc09cd9261b4a7153950p@chr2:10041210..10041222, -
1.34e-31FFCP PHASE1:Mm9::chr16:22898981..22898988,-#_3f4377175d2ffc09cd9261b4a7153950p@chr16:22898981..22898988, -
1.34e-31FFCP PHASE1:Mm9::chr12:105004018..105004046,-#_3f4377175d2ffc09cd9261b4a7153950p@chr12:105004018..105004046, -
1.34e-31FFCP PHASE1:Mm9::chr6:128436166..128436185,-#_3f4377175d2ffc09cd9261b4a7153950p@chr6:128436166..128436185, -
1.34e-31FFCP PHASE2:Mm9::chr2:10041210..10041222,-#_3f4377175d2ffc09cd9261b4a7153950p@chr2:10041210..10041222, -
1.51e-31FFCP PHASE1:Mm9::chr13:23928766..23928779,+#_edad125854cd0966ac29a460097a3f82p@chr13:23928766..23928779, +
1.51e-31FFCP PHASE2:Mm9::chr13:23928766..23928779,+#_edad125854cd0966ac29a460097a3f82p@chr13:23928766..23928779, +
1.58e-31FFCP PHASE2:Mm9::chr7:112744083..112744109,-#_1d9e73cc83d54f02486aae60a50ecc8fp@chr7:112744083..112744109, -
1.58e-31FFCP PHASE1:Mm9::chr7:112744083..112744109,-#_1d9e73cc83d54f02486aae60a50ecc8fp@chr7:112744083..112744109, -
1.58e-31FFCP PHASE2:Mm9::chr9:110892239..110892252,-#_1d9e73cc83d54f02486aae60a50ecc8fp2@Rtp3
1.58e-31FFCP PHASE1:Mm9::chr9:110892239..110892252,-#_1d9e73cc83d54f02486aae60a50ecc8fp2@Rtp3
1.65e-31FFCP PHASE1:Mm9::chr7:28237436..28237488,+#_96969abfb68383396dac07108f396ae1p3@Blvrb
1.65e-31FFCP PHASE1:Mm9::chr16:93929757..93929773,-#_96969abfb68383396dac07108f396ae1p1@Cldn14
1.65e-31FFCP PHASE2:Mm9::chr16:93929757..93929773,-#_96969abfb68383396dac07108f396ae1p1@Cldn14
1.65e-31FFCP PHASE2:Mm9::chr7:28237436..28237488,+#_96969abfb68383396dac07108f396ae1p3@Blvrb
4.64e-31FFCP PHASE2:Mm9::chr3:19889134..19889149,+#_fd49ef486690a81679795a21d5e94fa0p9@Cp
4.64e-31FFCP PHASE1:Mm9::chr3:19889134..19889149,+#_fd49ef486690a81679795a21d5e94fa0p9@Cp
5.17e-31FFCP PHASE2:Mm9::chr16:90738753..90738764,+#_aab107b1a75a6b74ea7b849a2fbde6efp9@Mrap
5.17e-31FFCP PHASE1:Mm9::chr16:90738753..90738764,+#_aab107b1a75a6b74ea7b849a2fbde6efp9@Mrap
4.06e-30FFCP PHASE2:Mm9::chr1:173155793..173155841,+#_57f6a6a355847bcda0067935f149c9b1p@chr1:173155793..173155841, +
4.06e-30FFCP PHASE1:Mm9::chr1:173155793..173155841,+#_57f6a6a355847bcda0067935f149c9b1p@chr1:173155793..173155841, +
4.4e-30FFCP PHASE2:Mm9::chr17:12584645..12584657,+#_4510ebc41462425c8e788c1228c5ff36p@chr17:12584645..12584657, +
4.4e-30FFCP PHASE1:Mm9::chr17:12584645..12584657,+#_4510ebc41462425c8e788c1228c5ff36p@chr17:12584645..12584657, +
4.77e-30FFCP PHASE1:Mm9::chr1:166179426..166179437,+#_302b0bbac658c8afa9b00ad393279cd9p@chr1:166179426..166179437, +
4.77e-30FFCP PHASE2:Mm9::chr1:166179426..166179437,+#_302b0bbac658c8afa9b00ad393279cd9p@chr1:166179426..166179437, +
6.77e-30FFCP PHASE2:Mm9::chr6:37480157..37480158,+#_0111a79b11f040b7f0248ade3a319123p4@Akr1d1
6.77e-30FFCP PHASE1:Mm9::chr7:121912266..121912277,+#_0111a79b11f040b7f0248ade3a319123p8@Insc
6.77e-30FFCP PHASE1:Mm9::chr6:37480157..37480158,+#_0111a79b11f040b7f0248ade3a319123p4@Akr1d1
6.77e-30FFCP PHASE2:Mm9::chr7:121912266..121912277,+#_0111a79b11f040b7f0248ade3a319123p8@Insc
7.36e-30FFCP PHASE2:Mm9::chr5:90893974..90893978,+#_3ed8d78fdc734389ff9e769bea6933b5p@chr5:90893974..90893978, +
7.36e-30FFCP PHASE1:Mm9::chr5:90893974..90893978,+#_3ed8d78fdc734389ff9e769bea6933b5p@chr5:90893974..90893978, +
7.71e-30FFCP PHASE1:Mm9::chr19:38191263..38191291,-#_1500bc88dc8581b5b8100f7e1b955543p@chr19:38191263..38191291, -
7.71e-30FFCP PHASE2:Mm9::chr19:38191263..38191291,-#_1500bc88dc8581b5b8100f7e1b955543p@chr19:38191263..38191291, -
8.79e-30FFCP PHASE1:Mm9::chr12:105066241..105066272,-#_9dd5efffda37d7a692a8f43602c45117p1@Serpina1b
8.79e-30FFCP PHASE2:Mm9::chr12:105002005..105002050,-#_9dd5efffda37d7a692a8f43602c45117p@chr12:105002005..105002050, -
8.79e-30FFCP PHASE1:Mm9::chr7:30124207..30124222,-#_9dd5efffda37d7a692a8f43602c45117p@chr7:30124207..30124222, -
8.79e-30FFCP PHASE2:Mm9::chr3:82847318..82847329,-#_9dd5efffda37d7a692a8f43602c45117p@chr3:82847318..82847329, -
8.79e-30FFCP PHASE1:Mm9::chr3:82847318..82847329,-#_9dd5efffda37d7a692a8f43602c45117p@chr3:82847318..82847329, -
8.79e-30FFCP PHASE2:Mm9::chr7:30124207..30124222,-#_9dd5efffda37d7a692a8f43602c45117p@chr7:30124207..30124222, -
8.79e-30FFCP PHASE1:Mm9::chr16:22895286..22895297,-#_9dd5efffda37d7a692a8f43602c45117p@chr16:22895286..22895297, -
8.79e-30FFCP PHASE1:Mm9::chr16:22899236..22899246,+#_9dd5efffda37d7a692a8f43602c45117p@chr16:22899236..22899246, +
8.79e-30FFCP PHASE1:Mm9::chr11:46512551..46512577,-#_9dd5efffda37d7a692a8f43602c45117p5@Timd2
8.79e-30FFCP PHASE1:Mm9::chr6:11948347..11948351,-#_9dd5efffda37d7a692a8f43602c45117p@chr6:11948347..11948351, -
8.79e-30FFCP PHASE1:Mm9::chr6:128438012..128438027,-#_9dd5efffda37d7a692a8f43602c45117p@chr6:128438012..128438027, -
8.79e-30FFCP PHASE1:Mm9::chr16:22899322..22899331,+#_9dd5efffda37d7a692a8f43602c45117p@chr16:22899322..22899331, +
8.79e-30FFCP PHASE2:Mm9::chr16:22899236..22899246,+#_9dd5efffda37d7a692a8f43602c45117p@chr16:22899236..22899246, +
8.79e-30FFCP PHASE2:Mm9::chr16:22899322..22899331,+#_9dd5efffda37d7a692a8f43602c45117p@chr16:22899322..22899331, +
8.79e-30FFCP PHASE2:Mm9::chr12:105003025..105003036,-#_9dd5efffda37d7a692a8f43602c45117p@chr12:105003025..105003036, -
8.79e-30FFCP PHASE1:Mm9::chr12:105002005..105002050,-#_9dd5efffda37d7a692a8f43602c45117p@chr12:105002005..105002050, -
8.79e-30FFCP PHASE1:Mm9::chr12:105003025..105003036,-#_9dd5efffda37d7a692a8f43602c45117p@chr12:105003025..105003036, -
8.79e-30FFCP PHASE2:Mm9::chr6:11948347..11948351,-#_9dd5efffda37d7a692a8f43602c45117p@chr6:11948347..11948351, -
8.79e-30FFCP PHASE1:Mm9::chr6:128436196..128436215,-#_9dd5efffda37d7a692a8f43602c45117p@chr6:128436196..128436215, -
8.79e-30FFCP PHASE2:Mm9::chr12:105066241..105066272,-#_9dd5efffda37d7a692a8f43602c45117p1@Serpina1b
8.79e-30FFCP PHASE2:Mm9::chr6:128438012..128438027,-#_9dd5efffda37d7a692a8f43602c45117p@chr6:128438012..128438027, -
8.79e-30FFCP PHASE2:Mm9::chr11:46512551..46512577,-#_9dd5efffda37d7a692a8f43602c45117p5@Timd2
8.79e-30FFCP PHASE2:Mm9::chr16:22895286..22895297,-#_9dd5efffda37d7a692a8f43602c45117p@chr16:22895286..22895297, -
8.79e-30FFCP PHASE2:Mm9::chr6:128436196..128436215,-#_9dd5efffda37d7a692a8f43602c45117p@chr6:128436196..128436215, -
9.07e-30FFCP PHASE1:Mm9::chr8:131012475..131012492,-#_8b83e376d3a5285b1d5f181354f5c77dp1@uc009nzu.1
9.07e-30FFCP PHASE2:Mm9::chr8:131012475..131012492,-#_8b83e376d3a5285b1d5f181354f5c77dp1@uc009nzu.1
9.31e-30FFCP PHASE2:Mm9::chr16:23449901..23449906,-#_ab557942ac206f4c7dd0c782831241a7p@chr16:23449901..23449906, -
9.31e-30FFCP PHASE1:Mm9::chr15:77605636..77605639,+#_ab557942ac206f4c7dd0c782831241a7p@chr15:77605636..77605639, +
9.31e-30FFCP PHASE1:Mm9::chr8:92849825..92849837,-#_ab557942ac206f4c7dd0c782831241a7p@chr8:92849825..92849837, -
9.31e-30FFCP PHASE2:Mm9::chr8:92849825..92849837,-#_ab557942ac206f4c7dd0c782831241a7p@chr8:92849825..92849837, -
9.31e-30FFCP PHASE2:Mm9::chr15:77605636..77605639,+#_ab557942ac206f4c7dd0c782831241a7p@chr15:77605636..77605639, +
9.31e-30FFCP PHASE1:Mm9::chr16:22895330..22895339,-#_ab557942ac206f4c7dd0c782831241a7p@chr16:22895330..22895339, -
9.31e-30FFCP PHASE2:Mm9::chr3:82835513..82835525,+#_ab557942ac206f4c7dd0c782831241a7p@chr3:82835513..82835525, +
9.31e-30FFCP PHASE1:Mm9::chr3:82835513..82835525,+#_ab557942ac206f4c7dd0c782831241a7p@chr3:82835513..82835525, +
9.31e-30FFCP PHASE1:Mm9::chr16:23449901..23449906,-#_ab557942ac206f4c7dd0c782831241a7p@chr16:23449901..23449906, -
9.31e-30FFCP PHASE2:Mm9::chr16:22895330..22895339,-#_ab557942ac206f4c7dd0c782831241a7p@chr16:22895330..22895339, -
9.46e-30FFCP PHASE2:Mm9::chr8:46380208..46380217,-#_990916735cb0b1853e3ccaac57401290p3@Klkb1
9.46e-30FFCP PHASE1:Mm9::chr8:46380208..46380217,-#_990916735cb0b1853e3ccaac57401290p3@Klkb1
9.86e-30FFCP PHASE2:Mm9::chr3:57191661..57191672,-#_c47e5b2edc76c825e78868c747467cd2p@chr3:57191661..57191672, -
9.86e-30FFCP PHASE1:Mm9::chr3:57191661..57191672,-#_c47e5b2edc76c825e78868c747467cd2p@chr3:57191661..57191672, -

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