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{{UBERON
{{UBERON
|id=UBERON:0005311
|alt_id=
|name=mammary placode
|namespace=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|xref=
|is_a=UBERON:0005085
|synonym=
|comment=TODO develops_from
|comment=TODO develops_from
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0008425
|develops_from=UBERON:0008425
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005311
|is_a=UBERON:0011814
|is_obsolete=
|located_in=
|located_in=
|name=mammary placode
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:mammary placode
Namespace:FANTOM
Definition:"The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
Comments:TODO develops_from

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011814(non-neurogenic ectodermal placode)
develops_from:UBERON:0008425(mammary ridge)



Children

develops from:UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005311 (mammary placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
1.87e-86FFCP PHASE1:Mm9::chr15:74707088..74707089,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:74707088..74707089, -
1.87e-86FFCP PHASE2:Mm9::chr3:79647358..79647364,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:79647358..79647364, -
1.87e-86FFCP PHASE2:Mm9::chr11:109658667..109658675,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109658667..109658675, -
1.87e-86FFCP PHASE2:Mm9::chr5:88103244..88103281,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103244..88103281, -
1.87e-86FFCP PHASE2:Mm9::chr2:164568599..164568608,-#_30b6d7c8bf53f346980477d3b2cc2429p8@Wfdc3
1.87e-86FFCP PHASE2:Mm9::chr8:47396093..47396097,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:47396093..47396097, +
1.87e-86FFCP PHASE1:Mm9::chr9:77686655..77686662,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686655..77686662, +
1.87e-86FFCP PHASE1:Mm9::chr5:88209047..88209050,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209047..88209050, -
1.87e-86FFCP PHASE1:Mm9::chr5:88098535..88098555,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88098535..88098555, +
1.87e-86FFCP PHASE1:Mm9::chr18:6733951..6733958,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733951..6733958, +
1.87e-86FFCP PHASE1:Mm9::chr11:6538794..6538800,-#_30b6d7c8bf53f346980477d3b2cc2429p4@Wap
1.87e-86FFCP PHASE2:Mm9::chr15:81082279..81082303,-#_30b6d7c8bf53f346980477d3b2cc2429p1@uc007wwj.1
1.87e-86FFCP PHASE2:Mm9::chr5:88217649..88217662,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217649..88217662, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393258..103393296,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393258..103393296, +
1.87e-86FFCP PHASE2:Mm9::chr11:6535604..6535612,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535604..6535612, +
1.87e-86FFCP PHASE2:Mm9::chr7:75913214..75913218,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:75913214..75913218, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123674..88123680,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123674..88123680, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123539..88123551,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123539..88123551, +
1.87e-86FFCP PHASE1:Mm9::chr2:109975213..109975217,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:109975213..109975217, +
1.87e-86FFCP PHASE1:Mm9::chr5:88361470..88361479,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88361470..88361479, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123986..88123989,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123986..88123989, +
1.87e-86FFCP PHASE1:Mm9::chr19:56109584..56109587,+#_30b6d7c8bf53f346980477d3b2cc2429p1@uc008hyp.1
1.87e-86FFCP PHASE2:Mm9::chr5:88098560..88098587,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88098560..88098587, -
1.87e-86FFCP PHASE2:Mm9::chr1:40637208..40637219,+#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr6:104295805..104295814,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:104295805..104295814, +
1.87e-86FFCP PHASE2:Mm9::chr5:88215607..88215628,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215607..88215628, +
1.87e-86FFCP PHASE1:Mm9::chr2:28416848..28416860,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:28416848..28416860, -
1.87e-86FFCP PHASE2:Mm9::chr7:35963309..35963311,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:35963309..35963311, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123555..88123565,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123555..88123565, -
1.87e-86FFCP PHASE1:Mm9::chr5:88217569..88217586,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217569..88217586, +
1.87e-86FFCP PHASE1:Mm9::chr5:88109964..88109969,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109964..88109969, -
1.87e-86FFCP PHASE1:Mm9::chr10:81564930..81564939,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:81564930..81564939, +
1.87e-86FFCP PHASE2:Mm9::chr2:28418029..28418047,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:28418029..28418047, +
1.87e-86FFCP PHASE2:Mm9::chr5:88127079..88127081,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88127079..88127081, -
1.87e-86FFCP PHASE2:Mm9::chr18:81785997..81786001,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:81785997..81786001, -
1.87e-86FFCP PHASE2:Mm9::chr9:55158428..55158429,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:55158428..55158429, +
1.87e-86FFCP PHASE1:Mm9::chr4:115520060..115520062,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:115520060..115520062, -
1.87e-86FFCP PHASE2:Mm9::chr9:77686637..77686644,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686637..77686644, +
1.87e-86FFCP PHASE2:Mm9::chr5:88210841..88210848,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210841..88210848, +
1.87e-86FFCP PHASE2:Mm9::chr5:151567394..151567401,+#_30b6d7c8bf53f346980477d3b2cc2429p9@Pds5b
1.87e-86FFCP PHASE1:Mm9::chr6:24162312..24162345,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:24162312..24162345, -
1.87e-86FFCP PHASE1:Mm9::chr4:118636797..118636805,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118636797..118636805, +
1.87e-86FFCP PHASE2:Mm9::chr4:40836029..40836032,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:40836029..40836032, +
1.87e-86FFCP PHASE2:Mm9::chr12:52131163..52131171,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:52131163..52131171, -
1.87e-86FFCP PHASE2:Mm9::chr5:88111209..88111249,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88111209..88111249, +
1.87e-86FFCP PHASE1:Mm9::chr5:88214300..88214314,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88214300..88214314, +
1.87e-86FFCP PHASE1:Mm9::chr5:88106613..88106646,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88106613..88106646, +
1.87e-86FFCP PHASE2:Mm9::chr5:88358825..88358828,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358825..88358828, +
1.87e-86FFCP PHASE1:Mm9::chr2:99574978..99574987,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:99574978..99574987, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393839..103393860,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393839..103393860, -
1.87e-86FFCP PHASE2:Mm9::chr7:112544693..112544699,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:112544693..112544699, -
1.87e-86FFCP PHASE1:Mm9::chr5:88358910..88358931,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358910..88358931, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123730..88123744,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123730..88123744, +
1.87e-86FFCP PHASE1:Mm9::chr11:109658667..109658675,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109658667..109658675, -
1.87e-86FFCP PHASE2:Mm9::chr19:17975686..17975688,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr19:17975686..17975688, -
1.87e-86FFCP PHASE2:Mm9::chr5:88207974..88207986,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88207974..88207986, +
1.87e-86FFCP PHASE2:Mm9::chr5:24319811..24319816,-#_30b6d7c8bf53f346980477d3b2cc2429p12@Rheb
1.87e-86FFCP PHASE1:Mm9::chr13:90032838..90032840,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr13:90032838..90032840, -
1.87e-86FFCP PHASE1:Mm9::chr11:6535571..6535575,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535571..6535575, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393712..103393723,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393712..103393723, -
1.87e-86FFCP PHASE2:Mm9::chr5:88106878..88106881,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88106878..88106881, +
1.87e-86FFCP PHASE1:Mm9::chr5:88210806..88210830,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210806..88210830, +
1.87e-86FFCP PHASE1:Mm9::chr5:88100568..88100584,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100568..88100584, -
1.87e-86FFCP PHASE1:Mm9::chr1:37943205..37943209,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:37943205..37943209, +
1.87e-86FFCP PHASE1:Mm9::chr18:79024191..79024193,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:79024191..79024193, +
1.87e-86FFCP PHASE2:Mm9::chr5:88240375..88240378,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88240375..88240378, +
1.87e-86FFCP PHASE1:Mm9::chr8:69495848..69495849,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:69495848..69495849, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393382..103393391,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393382..103393391, -
1.87e-86FFCP PHASE2:Mm9::chr18:15483458..15483466,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:15483458..15483466, +
1.87e-86FFCP PHASE2:Mm9::chr5:88123723..88123745,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123723..88123745, -
1.87e-86FFCP PHASE2:Mm9::chr10:69144379..69144384,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:69144379..69144384, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358781..88358799,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358781..88358799, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123611..88123628,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123611..88123628, -
1.87e-86FFCP PHASE2:Mm9::chr15:50141424..50141428,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:50141424..50141428, -
1.87e-86FFCP PHASE2:Mm9::chr4:118636813..118636824,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118636813..118636824, +
1.87e-86FFCP PHASE2:Mm9::chr5:88204324..88204334,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204324..88204334, +
1.87e-86FFCP PHASE1:Mm9::chr5:88126164..88126171,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88126164..88126171, -
1.87e-86FFCP PHASE1:Mm9::chr11:29447361..29447364,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:29447361..29447364, -
1.87e-86FFCP PHASE2:Mm9::chr5:88102247..88102287,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88102247..88102287, +
1.87e-86FFCP PHASE1:Mm9::chr5:88207077..88207084,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88207077..88207084, +
1.87e-86FFCP PHASE1:Mm9::chr5:88096268..88096283,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88096268..88096283, +
1.87e-86FFCP PHASE1:Mm9::chr18:6595472..6595477,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6595472..6595477, -
1.87e-86FFCP PHASE2:Mm9::chr15:98557870..98557874,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98557870..98557874, -
1.87e-86FFCP PHASE2:Mm9::chr5:88215680..88215714,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215680..88215714, -
1.87e-86FFCP PHASE2:Mm9::chr11:6535539..6535544,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535539..6535544, -
1.87e-86FFCP PHASE2:Mm9::chr9:67138095..67138099,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:67138095..67138099, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123611..88123628,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123611..88123628, -
1.87e-86FFCP PHASE1:Mm9::chr5:88217783..88217793,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217783..88217793, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121815..88121823,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121815..88121823, -
1.87e-86FFCP PHASE2:Mm9::chr5:88359113..88359133,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88359113..88359133, -
1.87e-86FFCP PHASE2:Mm9::chr1:37943205..37943209,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:37943205..37943209, +
1.87e-86FFCP PHASE2:Mm9::chr5:88097350..88097355,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88097350..88097355, +
1.87e-86FFCP PHASE1:Mm9::chr5:53394250..53394255,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:53394250..53394255, +
1.87e-86FFCP PHASE1:Mm9::chr4:118634204..118634217,+#_30b6d7c8bf53f346980477d3b2cc2429p3@Lao1
1.87e-86FFCP PHASE1:Mm9::chr18:27904115..27904120,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:27904115..27904120, +
1.87e-86FFCP PHASE2:Mm9::chr1:40636991..40636997,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:40636991..40636997, -

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