UBERON:0005383: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005383
|name=caudate-putamen
|namespace=
|def="Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudat...") |
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{{UBERON | {{UBERON | ||
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|comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | |comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | ||
|created_by= | |created_by= | ||
| | |def="Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure." [NIF_GrossAnatomy:nlx_anat_100312] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005383 | |||
|is_a=UBERON:0010314 ;;UBERON:0011215 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=caudate-putamen | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0005382 | |part_of=UBERON:0005382 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="caudate putamen" EXACT [];;"caudateputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312];;"caudoputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312] | |||
|union_of= | |||
|xref=ABA:CP;;BM:Tel-C-Pu;;BTO:0000212;;EFO:0001912;;EMAPA:19095;;MA:0000893;;NIF_GrossAnatomy:nlx_anat_100312 | |||
}} | }} | ||
Latest revision as of 17:53, 12 September 2014
| Name: | caudate-putamen | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure." [NIF_GrossAnatomy:nlx_anat_100312] | ||
| Xrefs: |
| ||
| Synonyms: |
"caudate putamen" EXACT [] "caudateputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312] "caudoputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312] | ||
| Comments: | CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0011215(central nervous system cell part cluster) |
|---|---|
| part_of: | UBERON:0005382(dorsal striatum) |
Children
| part of: | UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10152-102I8 (putamen, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
- 10365-105F5 (putamen, newborn, donor10223)
- 10372-105G3 (putamen, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005383 (caudate-putamen), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.79e-195 | FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_19e39301648d5d7d27000c832fb0b42b | p@chr17:7271778..7271784, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_19e39301648d5d7d27000c832fb0b42b | p5@ENST00000514240 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_19e39301648d5d7d27000c832fb0b42b | p@chr17:7271778..7271784, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_19e39301648d5d7d27000c832fb0b42b | p@chr18:54898506..54898515, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_19e39301648d5d7d27000c832fb0b42b | p5@ENST00000514240 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_19e39301648d5d7d27000c832fb0b42b | p@chr18:47967443..47967452, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_19e39301648d5d7d27000c832fb0b42b | p@chr18:54898506..54898515, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_19e39301648d5d7d27000c832fb0b42b | p@chr18:47967443..47967452, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr13:112726433..112726446, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr2:152828264..152828299, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr1:31352916..31352926, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr22:28195426..28195433,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr22:28195426..28195433, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr1:31352916..31352926, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chrX:45984754..45984763,+#_25aa57e3589d67e10cbc38af7f5e8157 | p@chrX:45984754..45984763, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:131761558..131761590,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr7:131761558..131761590, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chrX:45984754..45984763,+#_25aa57e3589d67e10cbc38af7f5e8157 | p@chrX:45984754..45984763, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr18:47967428..47967437, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr22:28195426..28195433,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr22:28195426..28195433, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:131761558..131761590,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr7:131761558..131761590, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr18:47967428..47967437, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr12:6031299..6031315, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr12:6031299..6031315, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr13:112726433..112726446, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_25aa57e3589d67e10cbc38af7f5e8157 | p@chr2:152828264..152828299, - |
| 5.41e-147 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_190c2564513f153d0303907aa9344b4d | p@chr14:78638610..78638621, + |
| 5.41e-147 | FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_190c2564513f153d0303907aa9344b4d | p@chr8:19799565..19799589, - |
| 5.41e-147 | FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_190c2564513f153d0303907aa9344b4d | p@chr8:19799565..19799589, - |
| 5.41e-147 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_190c2564513f153d0303907aa9344b4d | p@chr14:78638610..78638621, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr17:17642493..17642503,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr17:17642493..17642503, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr4:185115354..185115359,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr4:185115354..185115359, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr17:17642516..17642523,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr17:17642516..17642523, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr2:132589601..132589606,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p2@ENST00000437330 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr6:145132482..145132485,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr6:145132482..145132485, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr15:26273479..26273488,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr15:26273479..26273488, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr4:185115354..185115359,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr4:185115354..185115359, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr3:11019677..11019690,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr3:11019677..11019690, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr17:17642516..17642523,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr17:17642516..17642523, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr14:64884595..64884607,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr14:64884595..64884607, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr4:185115370..185115380,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr4:185115370..185115380, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chrX:82763874..82763884,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chrX:82763874..82763884, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:132607538..132607543,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr5:132607538..132607543, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr1:244945778..244945781,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr1:244945778..244945781, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:49016307..49016316,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr19:49016307..49016316, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr2:132589601..132589606,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p2@ENST00000437330 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr6:145132482..145132485,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr6:145132482..145132485, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr4:185115370..185115380,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr4:185115370..185115380, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr1:244945778..244945781,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr1:244945778..244945781, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr9:85575924..85575932,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr9:85575924..85575932, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chrX:82763874..82763884,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chrX:82763874..82763884, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:132607538..132607543,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr5:132607538..132607543, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr19:49016307..49016316,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr19:49016307..49016316, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr10:26097547..26097552,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr10:26097547..26097552, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr15:26273479..26273488,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr15:26273479..26273488, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr9:85575924..85575932,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr9:85575924..85575932, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr10:26097547..26097552,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr10:26097547..26097552, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr14:64884595..64884607,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr14:64884595..64884607, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr17:17642493..17642503,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr17:17642493..17642503, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr3:11019677..11019690,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr3:11019677..11019690, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr4:156417309..156417316,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr4:156417309..156417316, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr4:156417309..156417316,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42 | p@chr4:156417309..156417316, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_44d2386e1184a038e12f07efa8be140f | p@chr15:35546024..35546035, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_44d2386e1184a038e12f07efa8be140f | p@chr2:3853961..3853984, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_44d2386e1184a038e12f07efa8be140f | p@chr17:19390211..19390223, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_44d2386e1184a038e12f07efa8be140f | p@chr17:19390211..19390223, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_44d2386e1184a038e12f07efa8be140f | p@chr15:35546024..35546035, - |
| 2.33e-118 | FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_44d2386e1184a038e12f07efa8be140f | p@chr2:3853961..3853984, + |
| 3.48e-118 | FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_06ce0e90f2f7959ad0f5e26531d92f44 | p@chr10:97261874..97261887, - |
| 3.48e-118 | FFCP PHASE2:Hg19::chr12:117513131..117513155,-#_06ce0e90f2f7959ad0f5e26531d92f44 | p@chr12:117513131..117513155, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_06ce0e90f2f7959ad0f5e26531d92f44 | p@chr3:57807798..57807809, + |
| 3.48e-118 | FFCP PHASE1:Hg19::chr12:117513131..117513155,-#_06ce0e90f2f7959ad0f5e26531d92f44 | p@chr12:117513131..117513155, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_06ce0e90f2f7959ad0f5e26531d92f44 | p@chr10:97261874..97261887, - |
| 3.48e-118 | FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_06ce0e90f2f7959ad0f5e26531d92f44 | p@chr3:57807798..57807809, + |
| 3.48e-118 | FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_06ce0e90f2f7959ad0f5e26531d92f44 | p@chr20:9496091..9496106, + |
| 3.48e-118 | FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_06ce0e90f2f7959ad0f5e26531d92f44 | p2@BC051739 |
| 3.48e-118 | FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_06ce0e90f2f7959ad0f5e26531d92f44 | p@chr20:9496091..9496106, + |
| 3.48e-118 | FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_06ce0e90f2f7959ad0f5e26531d92f44 | p2@BC051739 |
| 7.78e-118 | FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_38cd7dd02b9aef186b174e0039e56493 | p6@SYNDIG1L |
| 7.78e-118 | FFCP PHASE1:Hg19::chr1:177134234..177134239,-#_38cd7dd02b9aef186b174e0039e56493 | p14@ASTN1 |
| 7.78e-118 | FFCP PHASE2:Hg19::chr1:177134234..177134239,-#_38cd7dd02b9aef186b174e0039e56493 | p14@ASTN1 |
| 7.78e-118 | FFCP PHASE2:Hg19::chr4:72101966..72101969,+#_38cd7dd02b9aef186b174e0039e56493 | p21@SLC4A4 |
| 7.78e-118 | FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_38cd7dd02b9aef186b174e0039e56493 | p6@SYNDIG1L |
| 7.78e-118 | FFCP PHASE1:Hg19::chr4:72101966..72101969,+#_38cd7dd02b9aef186b174e0039e56493 | p21@SLC4A4 |
| 1.16e-117 | FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_8bb7a7f42a765a178bfe3d406b74b411 | p23@KCNAB1 |
| 1.16e-117 | FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_8bb7a7f42a765a178bfe3d406b74b411 | p23@KCNAB1 |
| 4.06e-99 | FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_ba9da1061f2f62cce3d1bcad2f004d6a | p@chr5:121648127..121648167, - |
| 4.06e-99 | FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_ba9da1061f2f62cce3d1bcad2f004d6a | p@chr2:212989626..212989648, - |
| 4.06e-99 | FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_ba9da1061f2f62cce3d1bcad2f004d6a | p@chr19:1236637..1236645, - |
| 4.06e-99 | FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_ba9da1061f2f62cce3d1bcad2f004d6a | p@chr2:212989626..212989648, - |
| 4.06e-99 | FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_ba9da1061f2f62cce3d1bcad2f004d6a | p1@ENST00000421878 |
| 4.06e-99 | FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_ba9da1061f2f62cce3d1bcad2f004d6a | p@chr5:121648127..121648167, - |
| 4.06e-99 | FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_ba9da1061f2f62cce3d1bcad2f004d6a | p@chr19:1236637..1236645, - |
| 4.06e-99 | FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_ba9da1061f2f62cce3d1bcad2f004d6a | p@chr11:26497871..26497889, + |
| 4.06e-99 | FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_ba9da1061f2f62cce3d1bcad2f004d6a | p1@ENST00000421878 |
| 4.06e-99 | FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_ba9da1061f2f62cce3d1bcad2f004d6a | p@chr11:26497871..26497889, + |
| 5.69e-99 | FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_0d580929ea05469b36069a70e0038df4 | p@chr2:234227370..234227385, + |
| 5.69e-99 | FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_0d580929ea05469b36069a70e0038df4 | p1@LINC00523 |
| 5.69e-99 | FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_0d580929ea05469b36069a70e0038df4 | p@chr10:97261901..97261919, - |
| 5.69e-99 | FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_0d580929ea05469b36069a70e0038df4 | p10@SYNPR |
| 5.69e-99 | FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_0d580929ea05469b36069a70e0038df4 | p10@SYNPR |
| 5.69e-99 | FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_0d580929ea05469b36069a70e0038df4 | p@chr10:97261901..97261919, - |
