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{{UBERON
{{UBERON
|id=UBERON:0005417
|name=forelimb bud
|namespace=
|def="A limb bud that develops into a forelimb." [OBOL:automatic]
|xref=AAO:0010381;;BTO:0001645;;EHDAA:1699;;EMAPA:16406;;MIAA:0000065;;RETIRED_EHDAA2:0003198;;SCTID:346062002;;XAO:0003065
|is_a=UBERON:0004347;;UBERON:0005419
|synonym="anterior limb bud" EXACT [SCTID:346062002];;"arm bud" RELATED [];;"limb bud - forelimb" EXACT [MIAA:0000065];;"upper limb bud" EXACT [RETIRED_EHDAA2:0003198]
|comment=Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick.
|alt_id=
|alt_id=
|disjoint_from=
|comment=Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick // In tetrapods, the position of the forelimb is associated with the anterior expression border of Hoxc6 in the paraxial mesoderm (Burke et al., 1995)
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A limb bud that develops into a forelimb." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005417
|is_a=UBERON:0004347 ;;UBERON:0005419
|is_obsolete=
|located_in=
|located_in=
|name=forelimb bud
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000153
|part_of=UBERON:0000153
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="anterior limb bud" EXACT [SCTID:346062002];;"arm bud" RELATED [];;"limb bud - forelimb" EXACT [MIAA:0000065];;"upper limb bud" EXACT [RETIRED_EHDAA2:0003198]
|union_of=
|xref=AAO:0010381;;BTO:0001645;;EHDAA:1699;;EMAPA:16406;;MIAA:0000065;;RETIRED_EHDAA2:0003198;;SCTID:346062002;;XAO:0003065
}}
}}

Latest revision as of 17:53, 12 September 2014

Name:forelimb bud
Namespace:FANTOM
Definition:"A limb bud that develops into a forelimb." [OBOL:automatic]
Xrefs:
links:

AAO:0010381
BTO:0001645
EHDAA:1699
EMAPA:16406
MIAA:0000065
RETIRED_EHDAA2:0003198
SCTID:346062002

XAO:0003065
Synonyms: "anterior limb bud" EXACT [SCTID:346062002]
"arm bud" RELATED []
"limb bud - forelimb" EXACT [MIAA:0000065]
"upper limb bud" EXACT [RETIRED_EHDAA2:0003198]
Comments:Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick // In tetrapods, the position of the forelimb is associated with the anterior expression border of Hoxc6 in the paraxial mesoderm (Burke et al., 1995)

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004347(limb bud),UBERON:0005419(pectoral appendage bud)
part_of:UBERON:0000153(anterior region of body)



Children

develops from:UBERON:0002102 (forelimb),UBERON:0006875 (handplate)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005417 (forelimb bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.33e-86FFCP PHASE1:Mm9::chr2:74499300..74499309,-#_00ae87636e4bef7131a71dc9cd288d8ep5@Evx2
1.33e-86FFCP PHASE2:Mm9::chr2:74499300..74499309,-#_00ae87636e4bef7131a71dc9cd288d8ep5@Evx2
2.4e-74FFCP PHASE1:Mm9::chr2:165983686..165983720,-#_2b481d477bf4078e924745ae6712cfcbp@chr2:165983686..165983720, -
2.4e-74FFCP PHASE2:Mm9::chr5:120256413..120256428,-#_2b481d477bf4078e924745ae6712cfcbp@chr5:120256413..120256428, -
2.4e-74FFCP PHASE1:Mm9::chr15:51484092..51484121,-#_2b481d477bf4078e924745ae6712cfcbp@chr15:51484092..51484121, -
2.4e-74FFCP PHASE1:Mm9::chr5:120256413..120256428,-#_2b481d477bf4078e924745ae6712cfcbp@chr5:120256413..120256428, -
2.4e-74FFCP PHASE2:Mm9::chr15:51484092..51484121,-#_2b481d477bf4078e924745ae6712cfcbp@chr15:51484092..51484121, -
2.4e-74FFCP PHASE2:Mm9::chr2:165983686..165983720,-#_2b481d477bf4078e924745ae6712cfcbp@chr2:165983686..165983720, -
1.21e-61FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_2e246b3f33e1018ca7fc15c6ec7896c7p@chr2:74505324..74505330, +
1.21e-61FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_2e246b3f33e1018ca7fc15c6ec7896c7p@chr2:74505324..74505330, +
2.24e-61FFCP PHASE2:Mm9::chr2:74506264..74506286,+#_2533b71e470aed6ccf5e0ce6c07696d9p1@Hoxd13
2.24e-61FFCP PHASE1:Mm9::chr2:74506264..74506286,+#_2533b71e470aed6ccf5e0ce6c07696d9p1@Hoxd13
3.63e-52FFCP PHASE2:Mm9::chr2:74513064..74513089,+#_52882c3cffc75128d952c727f06a3478p2@Hoxd12
3.63e-52FFCP PHASE1:Mm9::chr2:74513064..74513089,+#_52882c3cffc75128d952c727f06a3478p2@Hoxd12
4.62e-52FFCP PHASE1:Mm9::chr2:74499251..74499258,-#_279888b147edc64653034fbe133c8114p4@Evx2
4.62e-52FFCP PHASE2:Mm9::chr2:74499251..74499258,-#_279888b147edc64653034fbe133c8114p4@Evx2
5.88e-52FFCP PHASE2:Mm9::chr2:33574246..33574257,-#_af10d7c93676a9cc07bf80afff5e5fbap3@ENSMUST00000130532
5.88e-52FFCP PHASE1:Mm9::chr2:33574246..33574257,-#_af10d7c93676a9cc07bf80afff5e5fbap3@ENSMUST00000130532
5.28e-50FFCP PHASE2:Mm9::chr2:74521516..74521525,+#_98af18f45340e1af138d62d733490228p1@ENSMUST00000136302
5.28e-50FFCP PHASE1:Mm9::chr2:74521516..74521525,+#_98af18f45340e1af138d62d733490228p1@ENSMUST00000136302
9.21e-50FFCP PHASE1:Mm9::chr6:51009701..51009744,-#_b4446739737ee4f054199b6bea046cb0p@chr6:51009701..51009744, -
9.21e-50FFCP PHASE2:Mm9::chr6:51009701..51009744,-#_b4446739737ee4f054199b6bea046cb0p@chr6:51009701..51009744, -
2.92e-48FFCP PHASE1:Mm9::chr10:97069737..97069749,+#_e39ae7fa3f8129ba9f895e9e17967517p5@Kera
2.92e-48FFCP PHASE2:Mm9::chr10:97069737..97069749,+#_e39ae7fa3f8129ba9f895e9e17967517p5@Kera
4.71e-48FFCP PHASE1:Mm9::chr6:52210816..52210831,-#_f1b4938fe2e65174ce01a7e9ab4986e1p2@Hoxa13
4.71e-48FFCP PHASE2:Mm9::chr6:52210816..52210831,-#_f1b4938fe2e65174ce01a7e9ab4986e1p2@Hoxa13
6.47e-48FFCP PHASE2:Mm9::chr2:74513149..74513159,+#_ee61b1965569e7a88af57e9aa53a5fcdp@chr2:74513149..74513159, +
6.47e-48FFCP PHASE1:Mm9::chr2:74513149..74513159,+#_ee61b1965569e7a88af57e9aa53a5fcdp@chr2:74513149..74513159, +
1.4e-44FFCP PHASE1:Mm9::chr1:165288513..165288518,+#_2c0a18a4d3c23223124fd51aabc23dbbp@chr1:165288513..165288518, +
1.4e-44FFCP PHASE2:Mm9::chr1:165288513..165288518,+#_2c0a18a4d3c23223124fd51aabc23dbbp@chr1:165288513..165288518, +
2.07e-41FFCP PHASE1:Mm9::chr1:164064835..164064864,-#_5bd04f9900f6ba72c843da848395561ep3@Dnm3
2.07e-41FFCP PHASE2:Mm9::chr1:164064835..164064864,-#_5bd04f9900f6ba72c843da848395561ep3@Dnm3
2.91e-40FFCP PHASE2:Mm9::chr2:33574267..33574279,-#_b01d5eae997b51818713b157556397c1p1@ENSMUST00000130532
2.91e-40FFCP PHASE1:Mm9::chr2:33574267..33574279,-#_b01d5eae997b51818713b157556397c1p1@ENSMUST00000130532
3.67e-40FFCP PHASE1:Mm9::chr2:33574309..33574319,-#_0c3b9399c77c8a46e0b517c604cb63eap4@ENSMUST00000130532
3.67e-40FFCP PHASE2:Mm9::chr2:33574309..33574319,-#_0c3b9399c77c8a46e0b517c604cb63eap4@ENSMUST00000130532
5.46e-39FFCP PHASE2:Mm9::chr6:52195000..52195013,+#_68a70ad4b977facdb76d98fc3b80d6dbp3@Hoxa11as
5.46e-39FFCP PHASE1:Mm9::chr6:52195000..52195013,+#_68a70ad4b977facdb76d98fc3b80d6dbp3@Hoxa11as
6.59e-38FFCP PHASE1:Mm9::chr2:74512009..74512012,+#_c0c8f5a60fe8049fb445bc078692cffbp@chr2:74512009..74512012, +
6.59e-38FFCP PHASE2:Mm9::chr2:74512009..74512012,+#_c0c8f5a60fe8049fb445bc078692cffbp@chr2:74512009..74512012, +
1.94e-35FFCP PHASE2:Mm9::chr2:33496847..33496857,+#_aa23779a424c67b17e07aa81b44adb08p3@ENSMUST00000147294, p3@uc008jia.1
1.94e-35FFCP PHASE1:Mm9::chr2:33496847..33496857,+#_aa23779a424c67b17e07aa81b44adb08p3@ENSMUST00000147294, p3@uc008jia.1
9.74e-35FFCP PHASE2:Mm9::chr13:89680110..89680115,+#_518ad2a43b7443c8d63fa5a76f3ae209p6@Hapln1
9.74e-35FFCP PHASE1:Mm9::chr13:89680110..89680115,+#_518ad2a43b7443c8d63fa5a76f3ae209p6@Hapln1
2.95e-34FFCP PHASE2:Mm9::chr9:96754986..96754989,-#_943fa648a1e050fdb0da52ec7ba3404ap3@Acpl2
2.95e-34FFCP PHASE1:Mm9::chr9:96754986..96754989,-#_943fa648a1e050fdb0da52ec7ba3404ap3@Acpl2
6.28e-34FFCP PHASE2:Mm9::chr8:23734491..23734495,+#_243c8e14f0821a9fb899f99a4d4160c0p1@Dkk4
6.28e-34FFCP PHASE1:Mm9::chr8:23734491..23734495,+#_243c8e14f0821a9fb899f99a4d4160c0p1@Dkk4
7.62e-34FFCP PHASE2:Mm9::chr2:155770985..155770995,-#_906eecf66624cc3d11166710454a5182p2@Gdf5
7.62e-34FFCP PHASE1:Mm9::chr2:155770985..155770995,-#_906eecf66624cc3d11166710454a5182p2@Gdf5
2.0e-33FFCP PHASE1:Mm9::chr18:80910310..80910329,-#_78cf551a948c59da76d8d14c118ba58dp@chr18:80910310..80910329, -
2.0e-33FFCP PHASE2:Mm9::chr18:80910310..80910329,-#_78cf551a948c59da76d8d14c118ba58dp@chr18:80910310..80910329, -
1.89e-32FFCP PHASE2:Mm9::chr6:52210774..52210787,-#_e248c4babbc11318490bc1fedd801eebp1@Hoxa13
1.89e-32FFCP PHASE1:Mm9::chr6:52210774..52210787,-#_e248c4babbc11318490bc1fedd801eebp1@Hoxa13
6.43e-32FFCP PHASE2:Mm9::chr2:33498116..33498124,+#_f4c3c66218127ce1719752da2725b401p@chr2:33498116..33498124, +
6.43e-32FFCP PHASE1:Mm9::chr2:33498116..33498124,+#_f4c3c66218127ce1719752da2725b401p@chr2:33498116..33498124, +
7.44e-32FFCP PHASE2:Mm9::chr2:33496574..33496588,+#_174865c7c91775b4277ff6e869cc6fb9p4@ENSMUST00000152118, p4@uc008jhz.1
7.44e-32FFCP PHASE1:Mm9::chr2:33496574..33496588,+#_174865c7c91775b4277ff6e869cc6fb9p4@ENSMUST00000152118, p4@uc008jhz.1
1.09e-30FFCP PHASE1:Mm9::chr2:74520075..74520087,+#_44e24d8c2af157c7c4f420512d2e895ap6@Hoxd11
1.09e-30FFCP PHASE2:Mm9::chr2:74520075..74520087,+#_44e24d8c2af157c7c4f420512d2e895ap6@Hoxd11
2.22e-30FFCP PHASE1:Mm9::chr12:34649201..34649205,+#_e3a91f29d2e9555b801bb8af79a892a4p@chr12:34649201..34649205, +
2.22e-30FFCP PHASE2:Mm9::chr12:34649201..34649205,+#_e3a91f29d2e9555b801bb8af79a892a4p@chr12:34649201..34649205, +
1.6e-29FFCP PHASE2:Mm9::chr5:120285104..120285113,+#_831b4afdcf523f9665475fae09e42f33p5@Tbx5
1.6e-29FFCP PHASE1:Mm9::chr5:120285104..120285113,+#_831b4afdcf523f9665475fae09e42f33p5@Tbx5
4.13e-29FFCP PHASE2:Mm9::chr5:120246556..120246565,+#_988a3843adfe064de70d51868cd5b949p@chr5:120246556..120246565, +
4.13e-29FFCP PHASE1:Mm9::chr5:120246556..120246565,+#_988a3843adfe064de70d51868cd5b949p@chr5:120246556..120246565, +
4.91e-29FFCP PHASE2:Mm9::chr5:120246522..120246553,+#_91641178b9511d3a783edc4530866949p@chr5:120246522..120246553, +
4.91e-29FFCP PHASE1:Mm9::chr5:120246522..120246553,+#_91641178b9511d3a783edc4530866949p@chr5:120246522..120246553, +
5.59e-29FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_15a5e9edf742480f2915f00b37d1bf3ap14@2810055G20Rik
5.59e-29FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_15a5e9edf742480f2915f00b37d1bf3ap14@2810055G20Rik
8.27e-29FFCP PHASE1:Mm9::chr3:29912310..29912321,-#_f8da50b319c710d39e4a0ca52c8c497dp23@Mecom
8.27e-29FFCP PHASE2:Mm9::chr3:29912310..29912321,-#_f8da50b319c710d39e4a0ca52c8c497dp23@Mecom
6.5e-28FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_9172b8675594d3d982dbd9715a814afcp8@Tbx15
6.5e-28FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_9172b8675594d3d982dbd9715a814afcp8@Tbx15
3.95e-27FFCP PHASE2:Mm9::chr15:97807283..97807309,-#_4a9592b15003facb29ffb4902827e69bp@chr15:97807283..97807309, -
3.95e-27FFCP PHASE1:Mm9::chr15:97807283..97807309,-#_4a9592b15003facb29ffb4902827e69bp@chr15:97807283..97807309, -
5.23e-27FFCP PHASE2:Mm9::chr1:165244244..165244254,-#_5a2fd55f6223a2f948928e0a7a3da03fp8@Prrx1
5.23e-27FFCP PHASE1:Mm9::chr1:165244244..165244254,-#_5a2fd55f6223a2f948928e0a7a3da03fp8@Prrx1
1.4e-26FFCP PHASE2:Mm9::chr5:42155277..42155281,-#_946e4f14fe623130bbf1d48c7cac8a92p2@Nkx3-2
1.4e-26FFCP PHASE1:Mm9::chr5:42155277..42155281,-#_946e4f14fe623130bbf1d48c7cac8a92p2@Nkx3-2
1.64e-26FFCP PHASE1:Mm9::chr16:95807232..95807250,-#_f0fea071efa9da833f2fda8c462f42b7p@chr16:95807232..95807250, -
1.64e-26FFCP PHASE2:Mm9::chr16:95807232..95807250,-#_f0fea071efa9da833f2fda8c462f42b7p@chr16:95807232..95807250, -
7.57e-26FFCP PHASE2:Mm9::chr4:125973415..125973418,+#_c23eb28967438bf371d4be8dff902d7dp@chr4:125973415..125973418, +
7.57e-26FFCP PHASE2:Mm9::chr3:37606335..37606337,-#_c23eb28967438bf371d4be8dff902d7dp@chr3:37606335..37606337, -
7.57e-26FFCP PHASE1:Mm9::chr3:37606335..37606337,-#_c23eb28967438bf371d4be8dff902d7dp@chr3:37606335..37606337, -
7.57e-26FFCP PHASE1:Mm9::chr3:86116124..86116132,+#_c23eb28967438bf371d4be8dff902d7dp@chr3:86116124..86116132, +
7.57e-26FFCP PHASE1:Mm9::chr4:125973415..125973418,+#_c23eb28967438bf371d4be8dff902d7dp@chr4:125973415..125973418, +
7.57e-26FFCP PHASE2:Mm9::chr3:86116124..86116132,+#_c23eb28967438bf371d4be8dff902d7dp@chr3:86116124..86116132, +
1.07e-25FFCP PHASE1:Mm9::chr17:68300324..68300336,-#_5a6376e271df8fade5c72c4531872410p5@Arhgap28
1.07e-25FFCP PHASE2:Mm9::chr17:68300324..68300336,-#_5a6376e271df8fade5c72c4531872410p5@Arhgap28
2.33e-25FFCP PHASE1:Mm9::chr7:75096968..75096978,+#_edf19fec94e125c9788ec2b5264bace9p9@Igf1r
2.33e-25FFCP PHASE2:Mm9::chr7:75096968..75096978,+#_edf19fec94e125c9788ec2b5264bace9p9@Igf1r
2.93e-25FFCP PHASE2:Mm9::chr15:101936581..101936594,+#_a135a27383a032d953b5e5c130830091p@chr15:101936581..101936594, +
2.93e-25FFCP PHASE1:Mm9::chr15:101936581..101936594,+#_a135a27383a032d953b5e5c130830091p@chr15:101936581..101936594, +
2.99e-25FFCP PHASE2:Mm9::chr17:23882313..23882330,-#_9e508579831750e951bf714673c96e1bp@chr17:23882313..23882330, -
2.99e-25FFCP PHASE1:Mm9::chr17:23882313..23882330,-#_9e508579831750e951bf714673c96e1bp@chr17:23882313..23882330, -
3.52e-25FFCP PHASE1:Mm9::chr2:155771018..155771042,-#_0ccb9a5127e19b3dd4d39ad509b3f853p1@Gdf5
3.52e-25FFCP PHASE2:Mm9::chr2:155771018..155771042,-#_0ccb9a5127e19b3dd4d39ad509b3f853p1@Gdf5
2.77e-24FFCP PHASE1:Mm9::chr15:77137392..77137399,-#_ef193d661cd9ccef799c1399808ff0c7p16@Rbfox2
2.77e-24FFCP PHASE2:Mm9::chr15:77137392..77137399,-#_ef193d661cd9ccef799c1399808ff0c7p16@Rbfox2

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