UBERON:0005417: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005417
|name=forelimb bud
|namespace=
|def="A limb bud that develops into a forelimb." [OBOL:automatic]
|xref=AAO:0010381;;BTO:0001645;;EHDAA:1699;;E...") |
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{{UBERON | {{UBERON | ||
|alt_id= | |alt_id= | ||
| | |comment=Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick // In tetrapods, the position of the forelimb is associated with the anterior expression border of Hoxc6 in the paraxial mesoderm (Burke et al., 1995) | ||
|created_by= | |created_by= | ||
| | |def="A limb bud that develops into a forelimb." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005417 | |||
|is_a=UBERON:0004347 ;;UBERON:0005419 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=forelimb bud | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000153 | |part_of=UBERON:0000153 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="anterior limb bud" EXACT [SCTID:346062002];;"arm bud" RELATED [];;"limb bud - forelimb" EXACT [MIAA:0000065];;"upper limb bud" EXACT [RETIRED_EHDAA2:0003198] | |||
|union_of= | |||
|xref=AAO:0010381;;BTO:0001645;;EHDAA:1699;;EMAPA:16406;;MIAA:0000065;;RETIRED_EHDAA2:0003198;;SCTID:346062002;;XAO:0003065 | |||
}} | }} | ||
Latest revision as of 17:53, 12 September 2014
| Name: | forelimb bud | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A limb bud that develops into a forelimb." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"anterior limb bud" EXACT [SCTID:346062002] "arm bud" RELATED [] "limb bud - forelimb" EXACT [MIAA:0000065] "upper limb bud" EXACT [RETIRED_EHDAA2:0003198] | ||
| Comments: | Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick // In tetrapods, the position of the forelimb is associated with the anterior expression border of Hoxc6 in the paraxial mesoderm (Burke et al., 1995) |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004347(limb bud),UBERON:0005419(pectoral appendage bud) |
|---|---|
| part_of: | UBERON:0000153(anterior region of body) |
Children
| develops from: | UBERON:0002102 (forelimb),UBERON:0006875 (handplate) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005417 (forelimb bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.33e-86 | FFCP PHASE2:Mm9::chr2:74499300..74499309,-#_00ae87636e4bef7131a71dc9cd288d8e | p5@Evx2 |
| 1.33e-86 | FFCP PHASE1:Mm9::chr2:74499300..74499309,-#_00ae87636e4bef7131a71dc9cd288d8e | p5@Evx2 |
| 2.4e-74 | FFCP PHASE1:Mm9::chr2:165983686..165983720,-#_2b481d477bf4078e924745ae6712cfcb | p@chr2:165983686..165983720, - |
| 2.4e-74 | FFCP PHASE2:Mm9::chr5:120256413..120256428,-#_2b481d477bf4078e924745ae6712cfcb | p@chr5:120256413..120256428, - |
| 2.4e-74 | FFCP PHASE1:Mm9::chr15:51484092..51484121,-#_2b481d477bf4078e924745ae6712cfcb | p@chr15:51484092..51484121, - |
| 2.4e-74 | FFCP PHASE1:Mm9::chr5:120256413..120256428,-#_2b481d477bf4078e924745ae6712cfcb | p@chr5:120256413..120256428, - |
| 2.4e-74 | FFCP PHASE2:Mm9::chr15:51484092..51484121,-#_2b481d477bf4078e924745ae6712cfcb | p@chr15:51484092..51484121, - |
| 2.4e-74 | FFCP PHASE2:Mm9::chr2:165983686..165983720,-#_2b481d477bf4078e924745ae6712cfcb | p@chr2:165983686..165983720, - |
| 1.21e-61 | FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_2e246b3f33e1018ca7fc15c6ec7896c7 | p@chr2:74505324..74505330, + |
| 1.21e-61 | FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_2e246b3f33e1018ca7fc15c6ec7896c7 | p@chr2:74505324..74505330, + |
| 2.24e-61 | FFCP PHASE1:Mm9::chr2:74506264..74506286,+#_2533b71e470aed6ccf5e0ce6c07696d9 | p1@Hoxd13 |
| 2.24e-61 | FFCP PHASE2:Mm9::chr2:74506264..74506286,+#_2533b71e470aed6ccf5e0ce6c07696d9 | p1@Hoxd13 |
| 3.63e-52 | FFCP PHASE2:Mm9::chr2:74513064..74513089,+#_52882c3cffc75128d952c727f06a3478 | p2@Hoxd12 |
| 3.63e-52 | FFCP PHASE1:Mm9::chr2:74513064..74513089,+#_52882c3cffc75128d952c727f06a3478 | p2@Hoxd12 |
| 4.62e-52 | FFCP PHASE1:Mm9::chr2:74499251..74499258,-#_279888b147edc64653034fbe133c8114 | p4@Evx2 |
| 4.62e-52 | FFCP PHASE2:Mm9::chr2:74499251..74499258,-#_279888b147edc64653034fbe133c8114 | p4@Evx2 |
| 5.88e-52 | FFCP PHASE2:Mm9::chr2:33574246..33574257,-#_af10d7c93676a9cc07bf80afff5e5fba | p3@ENSMUST00000130532 |
| 5.88e-52 | FFCP PHASE1:Mm9::chr2:33574246..33574257,-#_af10d7c93676a9cc07bf80afff5e5fba | p3@ENSMUST00000130532 |
| 5.28e-50 | FFCP PHASE2:Mm9::chr2:74521516..74521525,+#_98af18f45340e1af138d62d733490228 | p1@ENSMUST00000136302 |
| 5.28e-50 | FFCP PHASE1:Mm9::chr2:74521516..74521525,+#_98af18f45340e1af138d62d733490228 | p1@ENSMUST00000136302 |
| 9.21e-50 | FFCP PHASE1:Mm9::chr6:51009701..51009744,-#_b4446739737ee4f054199b6bea046cb0 | p@chr6:51009701..51009744, - |
| 9.21e-50 | FFCP PHASE2:Mm9::chr6:51009701..51009744,-#_b4446739737ee4f054199b6bea046cb0 | p@chr6:51009701..51009744, - |
| 2.92e-48 | FFCP PHASE2:Mm9::chr10:97069737..97069749,+#_e39ae7fa3f8129ba9f895e9e17967517 | p5@Kera |
| 2.92e-48 | FFCP PHASE1:Mm9::chr10:97069737..97069749,+#_e39ae7fa3f8129ba9f895e9e17967517 | p5@Kera |
| 4.71e-48 | FFCP PHASE1:Mm9::chr6:52210816..52210831,-#_f1b4938fe2e65174ce01a7e9ab4986e1 | p2@Hoxa13 |
| 4.71e-48 | FFCP PHASE2:Mm9::chr6:52210816..52210831,-#_f1b4938fe2e65174ce01a7e9ab4986e1 | p2@Hoxa13 |
| 6.47e-48 | FFCP PHASE1:Mm9::chr2:74513149..74513159,+#_ee61b1965569e7a88af57e9aa53a5fcd | p@chr2:74513149..74513159, + |
| 6.47e-48 | FFCP PHASE2:Mm9::chr2:74513149..74513159,+#_ee61b1965569e7a88af57e9aa53a5fcd | p@chr2:74513149..74513159, + |
| 1.4e-44 | FFCP PHASE2:Mm9::chr1:165288513..165288518,+#_2c0a18a4d3c23223124fd51aabc23dbb | p@chr1:165288513..165288518, + |
| 1.4e-44 | FFCP PHASE1:Mm9::chr1:165288513..165288518,+#_2c0a18a4d3c23223124fd51aabc23dbb | p@chr1:165288513..165288518, + |
| 2.07e-41 | FFCP PHASE2:Mm9::chr1:164064835..164064864,-#_5bd04f9900f6ba72c843da848395561e | p3@Dnm3 |
| 2.07e-41 | FFCP PHASE1:Mm9::chr1:164064835..164064864,-#_5bd04f9900f6ba72c843da848395561e | p3@Dnm3 |
| 2.91e-40 | FFCP PHASE2:Mm9::chr2:33574267..33574279,-#_b01d5eae997b51818713b157556397c1 | p1@ENSMUST00000130532 |
| 2.91e-40 | FFCP PHASE1:Mm9::chr2:33574267..33574279,-#_b01d5eae997b51818713b157556397c1 | p1@ENSMUST00000130532 |
| 3.67e-40 | FFCP PHASE2:Mm9::chr2:33574309..33574319,-#_0c3b9399c77c8a46e0b517c604cb63ea | p4@ENSMUST00000130532 |
| 3.67e-40 | FFCP PHASE1:Mm9::chr2:33574309..33574319,-#_0c3b9399c77c8a46e0b517c604cb63ea | p4@ENSMUST00000130532 |
| 5.46e-39 | FFCP PHASE2:Mm9::chr6:52195000..52195013,+#_68a70ad4b977facdb76d98fc3b80d6db | p3@Hoxa11as |
| 5.46e-39 | FFCP PHASE1:Mm9::chr6:52195000..52195013,+#_68a70ad4b977facdb76d98fc3b80d6db | p3@Hoxa11as |
| 6.59e-38 | FFCP PHASE2:Mm9::chr2:74512009..74512012,+#_c0c8f5a60fe8049fb445bc078692cffb | p@chr2:74512009..74512012, + |
| 6.59e-38 | FFCP PHASE1:Mm9::chr2:74512009..74512012,+#_c0c8f5a60fe8049fb445bc078692cffb | p@chr2:74512009..74512012, + |
| 1.94e-35 | FFCP PHASE2:Mm9::chr2:33496847..33496857,+#_aa23779a424c67b17e07aa81b44adb08 | p3@ENSMUST00000147294, p3@uc008jia.1 |
| 1.94e-35 | FFCP PHASE1:Mm9::chr2:33496847..33496857,+#_aa23779a424c67b17e07aa81b44adb08 | p3@ENSMUST00000147294, p3@uc008jia.1 |
| 9.74e-35 | FFCP PHASE2:Mm9::chr13:89680110..89680115,+#_518ad2a43b7443c8d63fa5a76f3ae209 | p6@Hapln1 |
| 9.74e-35 | FFCP PHASE1:Mm9::chr13:89680110..89680115,+#_518ad2a43b7443c8d63fa5a76f3ae209 | p6@Hapln1 |
| 2.95e-34 | FFCP PHASE2:Mm9::chr9:96754986..96754989,-#_943fa648a1e050fdb0da52ec7ba3404a | p3@Acpl2 |
| 2.95e-34 | FFCP PHASE1:Mm9::chr9:96754986..96754989,-#_943fa648a1e050fdb0da52ec7ba3404a | p3@Acpl2 |
| 6.28e-34 | FFCP PHASE2:Mm9::chr8:23734491..23734495,+#_243c8e14f0821a9fb899f99a4d4160c0 | p1@Dkk4 |
| 6.28e-34 | FFCP PHASE1:Mm9::chr8:23734491..23734495,+#_243c8e14f0821a9fb899f99a4d4160c0 | p1@Dkk4 |
| 7.62e-34 | FFCP PHASE1:Mm9::chr2:155770985..155770995,-#_906eecf66624cc3d11166710454a5182 | p2@Gdf5 |
| 7.62e-34 | FFCP PHASE2:Mm9::chr2:155770985..155770995,-#_906eecf66624cc3d11166710454a5182 | p2@Gdf5 |
| 2.0e-33 | FFCP PHASE1:Mm9::chr18:80910310..80910329,-#_78cf551a948c59da76d8d14c118ba58d | p@chr18:80910310..80910329, - |
| 2.0e-33 | FFCP PHASE2:Mm9::chr18:80910310..80910329,-#_78cf551a948c59da76d8d14c118ba58d | p@chr18:80910310..80910329, - |
| 1.89e-32 | FFCP PHASE2:Mm9::chr6:52210774..52210787,-#_e248c4babbc11318490bc1fedd801eeb | p1@Hoxa13 |
| 1.89e-32 | FFCP PHASE1:Mm9::chr6:52210774..52210787,-#_e248c4babbc11318490bc1fedd801eeb | p1@Hoxa13 |
| 6.43e-32 | FFCP PHASE2:Mm9::chr2:33498116..33498124,+#_f4c3c66218127ce1719752da2725b401 | p@chr2:33498116..33498124, + |
| 6.43e-32 | FFCP PHASE1:Mm9::chr2:33498116..33498124,+#_f4c3c66218127ce1719752da2725b401 | p@chr2:33498116..33498124, + |
| 7.44e-32 | FFCP PHASE1:Mm9::chr2:33496574..33496588,+#_174865c7c91775b4277ff6e869cc6fb9 | p4@ENSMUST00000152118, p4@uc008jhz.1 |
| 7.44e-32 | FFCP PHASE2:Mm9::chr2:33496574..33496588,+#_174865c7c91775b4277ff6e869cc6fb9 | p4@ENSMUST00000152118, p4@uc008jhz.1 |
| 1.09e-30 | FFCP PHASE1:Mm9::chr2:74520075..74520087,+#_44e24d8c2af157c7c4f420512d2e895a | p6@Hoxd11 |
| 1.09e-30 | FFCP PHASE2:Mm9::chr2:74520075..74520087,+#_44e24d8c2af157c7c4f420512d2e895a | p6@Hoxd11 |
| 2.22e-30 | FFCP PHASE2:Mm9::chr12:34649201..34649205,+#_e3a91f29d2e9555b801bb8af79a892a4 | p@chr12:34649201..34649205, + |
| 2.22e-30 | FFCP PHASE1:Mm9::chr12:34649201..34649205,+#_e3a91f29d2e9555b801bb8af79a892a4 | p@chr12:34649201..34649205, + |
| 1.6e-29 | FFCP PHASE2:Mm9::chr5:120285104..120285113,+#_831b4afdcf523f9665475fae09e42f33 | p5@Tbx5 |
| 1.6e-29 | FFCP PHASE1:Mm9::chr5:120285104..120285113,+#_831b4afdcf523f9665475fae09e42f33 | p5@Tbx5 |
| 4.13e-29 | FFCP PHASE1:Mm9::chr5:120246556..120246565,+#_988a3843adfe064de70d51868cd5b949 | p@chr5:120246556..120246565, + |
| 4.13e-29 | FFCP PHASE2:Mm9::chr5:120246556..120246565,+#_988a3843adfe064de70d51868cd5b949 | p@chr5:120246556..120246565, + |
| 4.91e-29 | FFCP PHASE2:Mm9::chr5:120246522..120246553,+#_91641178b9511d3a783edc4530866949 | p@chr5:120246522..120246553, + |
| 4.91e-29 | FFCP PHASE1:Mm9::chr5:120246522..120246553,+#_91641178b9511d3a783edc4530866949 | p@chr5:120246522..120246553, + |
| 5.59e-29 | FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_15a5e9edf742480f2915f00b37d1bf3a | p14@2810055G20Rik |
| 5.59e-29 | FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_15a5e9edf742480f2915f00b37d1bf3a | p14@2810055G20Rik |
| 8.27e-29 | FFCP PHASE1:Mm9::chr3:29912310..29912321,-#_f8da50b319c710d39e4a0ca52c8c497d | p23@Mecom |
| 8.27e-29 | FFCP PHASE2:Mm9::chr3:29912310..29912321,-#_f8da50b319c710d39e4a0ca52c8c497d | p23@Mecom |
| 6.5e-28 | FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_9172b8675594d3d982dbd9715a814afc | p8@Tbx15 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_9172b8675594d3d982dbd9715a814afc | p8@Tbx15 |
| 3.95e-27 | FFCP PHASE2:Mm9::chr15:97807283..97807309,-#_4a9592b15003facb29ffb4902827e69b | p@chr15:97807283..97807309, - |
| 3.95e-27 | FFCP PHASE1:Mm9::chr15:97807283..97807309,-#_4a9592b15003facb29ffb4902827e69b | p@chr15:97807283..97807309, - |
| 5.23e-27 | FFCP PHASE1:Mm9::chr1:165244244..165244254,-#_5a2fd55f6223a2f948928e0a7a3da03f | p8@Prrx1 |
| 5.23e-27 | FFCP PHASE2:Mm9::chr1:165244244..165244254,-#_5a2fd55f6223a2f948928e0a7a3da03f | p8@Prrx1 |
| 1.4e-26 | FFCP PHASE1:Mm9::chr5:42155277..42155281,-#_946e4f14fe623130bbf1d48c7cac8a92 | p2@Nkx3-2 |
| 1.4e-26 | FFCP PHASE2:Mm9::chr5:42155277..42155281,-#_946e4f14fe623130bbf1d48c7cac8a92 | p2@Nkx3-2 |
| 1.64e-26 | FFCP PHASE1:Mm9::chr16:95807232..95807250,-#_f0fea071efa9da833f2fda8c462f42b7 | p@chr16:95807232..95807250, - |
| 1.64e-26 | FFCP PHASE2:Mm9::chr16:95807232..95807250,-#_f0fea071efa9da833f2fda8c462f42b7 | p@chr16:95807232..95807250, - |
| 7.57e-26 | FFCP PHASE2:Mm9::chr3:86116124..86116132,+#_c23eb28967438bf371d4be8dff902d7d | p@chr3:86116124..86116132, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr4:125973415..125973418,+#_c23eb28967438bf371d4be8dff902d7d | p@chr4:125973415..125973418, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr4:125973415..125973418,+#_c23eb28967438bf371d4be8dff902d7d | p@chr4:125973415..125973418, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr3:37606335..37606337,-#_c23eb28967438bf371d4be8dff902d7d | p@chr3:37606335..37606337, - |
| 7.57e-26 | FFCP PHASE1:Mm9::chr3:37606335..37606337,-#_c23eb28967438bf371d4be8dff902d7d | p@chr3:37606335..37606337, - |
| 7.57e-26 | FFCP PHASE1:Mm9::chr3:86116124..86116132,+#_c23eb28967438bf371d4be8dff902d7d | p@chr3:86116124..86116132, + |
| 1.07e-25 | FFCP PHASE1:Mm9::chr17:68300324..68300336,-#_5a6376e271df8fade5c72c4531872410 | p5@Arhgap28 |
| 1.07e-25 | FFCP PHASE2:Mm9::chr17:68300324..68300336,-#_5a6376e271df8fade5c72c4531872410 | p5@Arhgap28 |
| 2.33e-25 | FFCP PHASE1:Mm9::chr7:75096968..75096978,+#_edf19fec94e125c9788ec2b5264bace9 | p9@Igf1r |
| 2.33e-25 | FFCP PHASE2:Mm9::chr7:75096968..75096978,+#_edf19fec94e125c9788ec2b5264bace9 | p9@Igf1r |
| 2.93e-25 | FFCP PHASE2:Mm9::chr15:101936581..101936594,+#_a135a27383a032d953b5e5c130830091 | p@chr15:101936581..101936594, + |
| 2.93e-25 | FFCP PHASE1:Mm9::chr15:101936581..101936594,+#_a135a27383a032d953b5e5c130830091 | p@chr15:101936581..101936594, + |
| 2.99e-25 | FFCP PHASE2:Mm9::chr17:23882313..23882330,-#_9e508579831750e951bf714673c96e1b | p@chr17:23882313..23882330, - |
| 2.99e-25 | FFCP PHASE1:Mm9::chr17:23882313..23882330,-#_9e508579831750e951bf714673c96e1b | p@chr17:23882313..23882330, - |
| 3.52e-25 | FFCP PHASE1:Mm9::chr2:155771018..155771042,-#_0ccb9a5127e19b3dd4d39ad509b3f853 | p1@Gdf5 |
| 3.52e-25 | FFCP PHASE2:Mm9::chr2:155771018..155771042,-#_0ccb9a5127e19b3dd4d39ad509b3f853 | p1@Gdf5 |
| 2.77e-24 | FFCP PHASE1:Mm9::chr15:77137392..77137399,-#_ef193d661cd9ccef799c1399808ff0c7 | p16@Rbfox2 |
| 2.77e-24 | FFCP PHASE2:Mm9::chr15:77137392..77137399,-#_ef193d661cd9ccef799c1399808ff0c7 | p16@Rbfox2 |
