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{{UBERON
{{UBERON
|id=UBERON:0006234
|alt_id=
|name=femur pre-cartilage condensation
|namespace=
|def=
|xref=EHDAA2:0000508;;EMAPA:17502;;VHOG:0000951
|is_a=UBERON:0005866
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=emapa_ehdaa2
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006234
|is_a=UBERON:0005254 ;;UBERON:0010882 ;;UBERON:0010886 ;;UBERON:0015052 ;;UBERON:0017650
|is_obsolete=
|located_in=
|located_in=
|name=femur pre-cartilage condensation
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=emapa_ehdaa2
|synonym=
|union_of=
|xref=EHDAA2:0000508;;EMAPA:17502;;VHOG:0000951
}}
}}

Latest revision as of 17:56, 12 September 2014

Name:femur pre-cartilage condensation
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0000508
EMAPA:17502

VHOG:0000951
Subset: emapa_ehdaa2

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005254(upper leg mesenchyme),UBERON:0010882(limb bone pre-cartilage condensation),UBERON:0010886(hindlimb bone pre-cartilage condensation),UBERON:0015052(femur endochondral element),UBERON:0017650(developing mesenchymal structure)



Children

develops from:UBERON:0010129 (femur cartilage element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006234 (femur pre-cartilage condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1f9262929ec92a10d717dfb5b0dcacd7p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1f9262929ec92a10d717dfb5b0dcacd7p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_78b00943d9bb051ce79e2f23466806f9p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_78b00943d9bb051ce79e2f23466806f9p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_78b00943d9bb051ce79e2f23466806f9p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_78b00943d9bb051ce79e2f23466806f9p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_78b00943d9bb051ce79e2f23466806f9p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_78b00943d9bb051ce79e2f23466806f9p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_1ceb806985e2baea5b9d6d8b687caa8ep@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_1ceb806985e2baea5b9d6d8b687caa8ep@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_93119401d72a12fae0ed931b0369e58dp@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_93119401d72a12fae0ed931b0369e58dp@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_78e0a4173da466b31279fa45b7a5b21cp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_78e0a4173da466b31279fa45b7a5b21cp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_78e0a4173da466b31279fa45b7a5b21cp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_78e0a4173da466b31279fa45b7a5b21cp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_78e0a4173da466b31279fa45b7a5b21cp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_78e0a4173da466b31279fa45b7a5b21cp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_78e0a4173da466b31279fa45b7a5b21cp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_78e0a4173da466b31279fa45b7a5b21cp@chr6:4490674..4490679, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_7d6ec50e4a98486c5e1e7bbecded01dcp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_7d6ec50e4a98486c5e1e7bbecded01dcp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_8ec348d66616e88718ee610549133947p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_8ec348d66616e88718ee610549133947p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_181296ca0156ea945abf8b9a8ada9e54p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_181296ca0156ea945abf8b9a8ada9e54p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_ea0b2e6cff40695f4a93df1b8fbcbb5ap@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_ea0b2e6cff40695f4a93df1b8fbcbb5ap@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_627c12a3f26417a45a15e5fd8377193ap5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_627c12a3f26417a45a15e5fd8377193ap5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_d1f33180aa2e7d997b87ba545cf4dffdp2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_d1f33180aa2e7d997b87ba545cf4dffdp2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_4df9e3b4b56cee2fd84767b9cc8b075fp3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_4df9e3b4b56cee2fd84767b9cc8b075fp3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_58929b2a845dd8abbf00ef3fa488ea1fp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_58929b2a845dd8abbf00ef3fa488ea1fp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_58929b2a845dd8abbf00ef3fa488ea1fp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_58929b2a845dd8abbf00ef3fa488ea1fp@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_aab6feaf9ef534072d9f8b4e776ba5a7p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_aab6feaf9ef534072d9f8b4e776ba5a7p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_aab6feaf9ef534072d9f8b4e776ba5a7p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_aab6feaf9ef534072d9f8b4e776ba5a7p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_061474a66de462c13fa60e96554ff134p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_061474a66de462c13fa60e96554ff134p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_9ee36d7368ab45440c8502fd3ec619ccp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_9ee36d7368ab45440c8502fd3ec619ccp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_9ee36d7368ab45440c8502fd3ec619ccp@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_9ee36d7368ab45440c8502fd3ec619ccp@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_9baac06815f78f3cf1f43558664af9bep@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_9baac06815f78f3cf1f43558664af9bep@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_37f5d5e3c0b659ff155e67c37b6d8ff1p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_37f5d5e3c0b659ff155e67c37b6d8ff1p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_37f5d5e3c0b659ff155e67c37b6d8ff1p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_37f5d5e3c0b659ff155e67c37b6d8ff1p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_593cae70df4066ca5aa1386c8fa7cd04p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_593cae70df4066ca5aa1386c8fa7cd04p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_2493adab6f1e8a4f6b396c94d548fd6ep2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_2493adab6f1e8a4f6b396c94d548fd6ep2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_a4cf6380e4116418fa6f468fdebec80bp2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_a4cf6380e4116418fa6f468fdebec80bp2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_0d2460828b509f9406d252b0df0e88a6p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_0d2460828b509f9406d252b0df0e88a6p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_dcaef14d48d33c305eb6e403071ae94bp@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_dcaef14d48d33c305eb6e403071ae94bp1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_dcaef14d48d33c305eb6e403071ae94bp@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_dcaef14d48d33c305eb6e403071ae94bp1@Msmp
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_8a2680b1dbe76f0ce447c8a3d7a008d6p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_8a2680b1dbe76f0ce447c8a3d7a008d6p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_8a2680b1dbe76f0ce447c8a3d7a008d6p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_8a2680b1dbe76f0ce447c8a3d7a008d6p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_f759088aae97837eceddc1dc266127aep@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_f759088aae97837eceddc1dc266127aep@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_f9d75d112a1922652ef03fedba057e4cp@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_f9d75d112a1922652ef03fedba057e4cp@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_463ce83bcf13e61e41a9e554d3149996p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_463ce83bcf13e61e41a9e554d3149996p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_ea79b9c10423e8e511c0d08c4c940605p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_ea79b9c10423e8e511c0d08c4c940605p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_43d3b663c54a309ad2dcc26c6f337cb9p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_43d3b663c54a309ad2dcc26c6f337cb9p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_a03e30b4ba8a96872d7dc2e1fd93831cp7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_a03e30b4ba8a96872d7dc2e1fd93831cp7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_3ec2e1da6f460e39505937e0b2ab36afp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_3ec2e1da6f460e39505937e0b2ab36afp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_3ec2e1da6f460e39505937e0b2ab36afp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_3ec2e1da6f460e39505937e0b2ab36afp@chr7:133592162..133592188, -
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_4064090e8fb4651f4db53efc64fe81ffp4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_4064090e8fb4651f4db53efc64fe81ffp4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_6cb0d99fb543f980c61fbb4adb1b149ap1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_6cb0d99fb543f980c61fbb4adb1b149ap1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_8a4240af2c3bc5a28fb09c1ca8c90149p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_8a4240af2c3bc5a28fb09c1ca8c90149p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_8a4240af2c3bc5a28fb09c1ca8c90149p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_8a4240af2c3bc5a28fb09c1ca8c90149p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_b6e1404c91a8991958b8a369f68d142fp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_b6e1404c91a8991958b8a369f68d142fp5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_b6e1404c91a8991958b8a369f68d142fp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_b6e1404c91a8991958b8a369f68d142fp@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_16c04058008bb7d230e3f03bfc5b0364p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_16c04058008bb7d230e3f03bfc5b0364p2@Siglec15

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