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{{UBERON
{{UBERON
|id=UBERON:0009663
|alt_id=
|name=telencephalic nucleus
|namespace=
|def=
|xref=TAO:0002178;;ZFA:0001660
|is_a=UBERON:0002308;;UBERON:0002791
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009663
|is_a=UBERON:0002308 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=telencephalic nucleus
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001893
|part_of=UBERON:0001893
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=TAO:0002178;;ZFA:0001660
}}
}}

Latest revision as of 18:06, 12 September 2014

Name:telencephalic nucleus
Namespace:FANTOM
Xrefs:
links:

TAO:0002178

ZFA:0001660

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002308(nucleus of brain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001893(telencephalon)



Children

is a:UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),UBERON:0001875 (globus pallidus),UBERON:0001882 (nucleus accumbens)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009663 (telencephalic nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.16e-143FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_70d11826affce57d1750faf67503ee0cp@chr2:7112752..7112770, +
1.16e-143FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_70d11826affce57d1750faf67503ee0cp@chr2:7112752..7112770, +
1.48e-143FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_32a39a406d0fc3f6234d3b3b72ff4cc8p3@ENST00000413244
1.48e-143FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_32a39a406d0fc3f6234d3b3b72ff4cc8p3@ENST00000413244
6.94e-140FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_88e30d0a572f0d788f6b205da0ae5fdbp@chr2:3853961..3853984, +
6.94e-140FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_88e30d0a572f0d788f6b205da0ae5fdbp@chr2:3853961..3853984, +
6.94e-140FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_88e30d0a572f0d788f6b205da0ae5fdbp@chr17:19390211..19390223, +
6.94e-140FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_88e30d0a572f0d788f6b205da0ae5fdbp@chr15:35546024..35546035, -
6.94e-140FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_88e30d0a572f0d788f6b205da0ae5fdbp@chr17:19390211..19390223, +
6.94e-140FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_88e30d0a572f0d788f6b205da0ae5fdbp@chr15:35546024..35546035, -
4.37e-126FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_bdb2ce3aac6069e16f8e4f0b9debdcd2p10@PTPN5
4.37e-126FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_bdb2ce3aac6069e16f8e4f0b9debdcd2p10@PTPN5
7.13e-117FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_648d284b1f0a5baff84455b97ed87e50p@chr10:97261901..97261919, -
7.13e-117FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_648d284b1f0a5baff84455b97ed87e50p@chr10:97261901..97261919, -
7.13e-117FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_648d284b1f0a5baff84455b97ed87e50p@chr11:26497871..26497889, +
7.13e-117FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_648d284b1f0a5baff84455b97ed87e50p@chr11:26497871..26497889, +
9.06e-117FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_75b66c4487ec6f82b20bcb4526adc9e1p1@ENST00000421878
9.06e-117FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_75b66c4487ec6f82b20bcb4526adc9e1p@chr19:1236637..1236645, -
9.06e-117FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_75b66c4487ec6f82b20bcb4526adc9e1p8@ANO3
9.06e-117FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_75b66c4487ec6f82b20bcb4526adc9e1p@chr19:1236637..1236645, -
9.06e-117FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_75b66c4487ec6f82b20bcb4526adc9e1p8@ANO3
9.06e-117FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_75b66c4487ec6f82b20bcb4526adc9e1p1@ENST00000421878
9.06e-117FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_75b66c4487ec6f82b20bcb4526adc9e1p14@ADORA2A
9.06e-117FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_75b66c4487ec6f82b20bcb4526adc9e1p14@ADORA2A
9.29e-115FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_d2d0949d35e1fa79821019b078692ff7p14@PPP1CA
9.29e-115FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_d2d0949d35e1fa79821019b078692ff7p14@PPP1CA
1.7e-112FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_08f301e86153625ba747e9f6fd91f5cap@chr17:19390234..19390251, +
1.7e-112FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_08f301e86153625ba747e9f6fd91f5cap@chr17:19390234..19390251, +
2.06e-112FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_4bbb8714233933b6701a96333fecad31p28@ARPP21
2.06e-112FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_4bbb8714233933b6701a96333fecad31p28@ARPP21
2.5e-112FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_3afb0c76e0b3102ec15a6145b34e1b7ep5@ANO3
2.5e-112FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_3afb0c76e0b3102ec15a6145b34e1b7ep5@ANO3
2.5e-112FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_3afb0c76e0b3102ec15a6145b34e1b7ep@chr10:73313437..73313451, -
2.5e-112FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_3afb0c76e0b3102ec15a6145b34e1b7ep@chr10:73313437..73313451, -
3.03e-112FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_a502db9ad3c07a4e6f324ce371e379d4p@chr3:16851273..16851310, +
3.03e-112FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_a502db9ad3c07a4e6f324ce371e379d4p@chr3:16851273..16851310, +
3.15e-112FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_beedc30f66ad4d0f0590139e260795ccp20@WIPF3
3.15e-112FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_beedc30f66ad4d0f0590139e260795ccp@chr7:22382758..22382765, -
3.15e-112FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_beedc30f66ad4d0f0590139e260795ccp@chr1:31352916..31352926, -
3.15e-112FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_beedc30f66ad4d0f0590139e260795ccp@chr18:47967428..47967437, -
3.15e-112FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_beedc30f66ad4d0f0590139e260795ccp@chr12:6031299..6031315, -
3.15e-112FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_beedc30f66ad4d0f0590139e260795ccp@chr14:78638610..78638621, +
3.15e-112FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_beedc30f66ad4d0f0590139e260795ccp@chr13:112726433..112726446, +
3.15e-112FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_beedc30f66ad4d0f0590139e260795ccp1@GNRH1
3.15e-112FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_beedc30f66ad4d0f0590139e260795ccp@chr13:112726433..112726446, +
3.15e-112FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_beedc30f66ad4d0f0590139e260795ccp@chr14:78638610..78638621, +
3.15e-112FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_beedc30f66ad4d0f0590139e260795ccp@chr18:47967428..47967437, -
3.15e-112FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_beedc30f66ad4d0f0590139e260795ccp@chr7:22382758..22382765, -
3.15e-112FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_beedc30f66ad4d0f0590139e260795ccp@chr2:152828264..152828299, -
3.15e-112FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_beedc30f66ad4d0f0590139e260795ccp@chr2:152828264..152828299, -
3.15e-112FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_beedc30f66ad4d0f0590139e260795ccp@chr8:19799565..19799589, -
3.15e-112FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_beedc30f66ad4d0f0590139e260795ccp@chr12:6031299..6031315, -
3.15e-112FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_beedc30f66ad4d0f0590139e260795ccp@chr1:31352916..31352926, -
3.15e-112FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_beedc30f66ad4d0f0590139e260795ccp@chr15:35546154..35546174, -
3.15e-112FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_beedc30f66ad4d0f0590139e260795ccp1@GNRH1
3.15e-112FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_beedc30f66ad4d0f0590139e260795ccp@chr15:35546154..35546174, -
3.15e-112FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_beedc30f66ad4d0f0590139e260795ccp@chr8:19799565..19799589, -
3.15e-112FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_beedc30f66ad4d0f0590139e260795ccp20@WIPF3
3.67e-112FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_b1ff59482093a2932f0bae38fa79f852p@chr7:67899920..67899958, -
3.67e-112FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_b1ff59482093a2932f0bae38fa79f852p@chr7:67899920..67899958, -
1.8e-101FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_f4d92bff7b40b00623adb7b40ae8ba43p@chr6:166076645..166076657, -
1.8e-101FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_f4d92bff7b40b00623adb7b40ae8ba43p@chr6:166076645..166076657, -
2.15e-101FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_d318d46b5bc40800422c501c48942ffdp2@ENST00000413244
2.15e-101FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_d318d46b5bc40800422c501c48942ffdp6@PTPN5
2.15e-101FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_d318d46b5bc40800422c501c48942ffdp2@ENST00000413244
2.15e-101FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_d318d46b5bc40800422c501c48942ffdp6@PTPN5
7.2e-101FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_fff9402bf670254034b7fd1e882b068dp@chr21:43917191..43917207, -
7.2e-101FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_fff9402bf670254034b7fd1e882b068dp@chr21:43917191..43917207, -
1.61e-100FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_51d6e7acb9f2039a9649b8877270cb52p@chr13:98995904..98995913, +
1.61e-100FFCP PHASE2:Hg19::chr6:80472250..80472261,+#_51d6e7acb9f2039a9649b8877270cb52p@chr6:80472250..80472261, +
1.61e-100FFCP PHASE1:Hg19::chr6:80472250..80472261,+#_51d6e7acb9f2039a9649b8877270cb52p@chr6:80472250..80472261, +
1.61e-100FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_51d6e7acb9f2039a9649b8877270cb52p@chr13:98995904..98995913, +
2.42e-100FFCP PHASE1:Hg19::chr1:101003738..101003747,+#_d5652d1f89e052c8570034af0fe4e8a4p9@GPR88
2.42e-100FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_d5652d1f89e052c8570034af0fe4e8a4p@chr11:80886203..80886231, +
2.42e-100FFCP PHASE2:Hg19::chr1:101003738..101003747,+#_d5652d1f89e052c8570034af0fe4e8a4p9@GPR88
2.42e-100FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_d5652d1f89e052c8570034af0fe4e8a4p@chr11:80886203..80886231, +
2.97e-100FFCP PHASE2:Hg19::chr20:9495125..9495132,+#_6793039df0afe31068629b105be9c2adp17@LAMP5
2.97e-100FFCP PHASE1:Hg19::chr20:9495125..9495132,+#_6793039df0afe31068629b105be9c2adp17@LAMP5
2.97e-100FFCP PHASE1:Hg19::chr5:79866189..79866202,+#_6793039df0afe31068629b105be9c2adp@chr5:79866189..79866202, +
2.97e-100FFCP PHASE2:Hg19::chr5:79866189..79866202,+#_6793039df0afe31068629b105be9c2adp@chr5:79866189..79866202, +
1.9e-92FFCP PHASE2:Hg19::chr12:122181551..122181562,+#_695779902370a4aa9595e37b90e271c5p@chr12:122181551..122181562, +
1.9e-92FFCP PHASE1:Hg19::chr12:122181551..122181562,+#_695779902370a4aa9595e37b90e271c5p@chr12:122181551..122181562, +
2.6e-92FFCP PHASE1:Hg19::chr11:120690389..120690422,+#_abe1aadbb76acfd5204ce11f55962564p@chr11:120690389..120690422, +
2.6e-92FFCP PHASE2:Hg19::chr11:120690389..120690422,+#_abe1aadbb76acfd5204ce11f55962564p@chr11:120690389..120690422, +
3.52e-90FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_f681fbcd52d92680e0eb8d03b86c2279p@chr10:97261874..97261887, -
3.52e-90FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_f681fbcd52d92680e0eb8d03b86c2279p2@BC051739
3.52e-90FFCP PHASE2:Hg19::chr12:11652913..11652927,+#_f681fbcd52d92680e0eb8d03b86c2279p@chr12:11652913..11652927, +
3.52e-90FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_f681fbcd52d92680e0eb8d03b86c2279p@chr10:97261874..97261887, -
3.52e-90FFCP PHASE1:Hg19::chr12:11652913..11652927,+#_f681fbcd52d92680e0eb8d03b86c2279p@chr12:11652913..11652927, +
3.52e-90FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_f681fbcd52d92680e0eb8d03b86c2279p@chr3:57807798..57807809, +
3.52e-90FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_f681fbcd52d92680e0eb8d03b86c2279p@chr3:57807798..57807809, +
3.52e-90FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_f681fbcd52d92680e0eb8d03b86c2279p@chr20:9496091..9496106, +
3.52e-90FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_f681fbcd52d92680e0eb8d03b86c2279p@chr20:9496091..9496106, +
3.52e-90FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_f681fbcd52d92680e0eb8d03b86c2279p2@BC051739
4.43e-90FFCP PHASE2:Hg19::chr11:130011708..130011717,+#_0d4816ff4a25165ab73791aacea77583p18@APLP2
4.43e-90FFCP PHASE1:Hg19::chr11:130011708..130011717,+#_0d4816ff4a25165ab73791aacea77583p18@APLP2
4.43e-90FFCP PHASE2:Hg19::chr6:145132414..145132428,+#_0d4816ff4a25165ab73791aacea77583p@chr6:145132414..145132428, +
4.43e-90FFCP PHASE1:Hg19::chr6:145132414..145132428,+#_0d4816ff4a25165ab73791aacea77583p@chr6:145132414..145132428, +
5.58e-90FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_d86bcf461b2b40dca5624b9880a88b42p23@KCNAB1
5.58e-90FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_d86bcf461b2b40dca5624b9880a88b42p23@KCNAB1

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