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{{UBERON
{{UBERON
|id=UBERON:0009773
|alt_id=
|name=renal tubule
|namespace=
|def="A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10]
|xref=
|is_a=UBERON:0003914;;UBERON:0006555
|synonym="renal tubule (generic)" EXACT [UBERON:cjm];;"tubule of excretory system" EXACT [OBOL:automatic, UBERON:cjm]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10]
|subset=grouping_class
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009773
|is_a=UBERON:0003914 ;;UBERON:0006555
|is_obsolete=
|located_in=
|located_in=
|name=renal tubule
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001008
|part_of=UBERON:0001008
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym="renal tubule (generic)" EXACT [UBERON:cjm];;"tubule of excretory system" EXACT [OBOL:automatic, UBERON:cjm]
|union_of=
|xref=
}}
}}

Latest revision as of 18:06, 12 September 2014

Name:renal tubule
Namespace:FANTOM
Definition:"A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10]
Synonyms: "renal tubule (generic)" EXACT [UBERON:cjm]
"tubule of excretory system" EXACT [OBOL:automatic, UBERON:cjm]
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003914(epithelial tube),UBERON:0006555(excretory tube)
part_of:UBERON:0001008(renal system)



Children

is a:UBERON:0001231 (nephron tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009773 (renal tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.05e-87FFCP PHASE2:Hg19::chr2:693380..693398,+#_ed32da53e975f90ddf85dbdec5fab8d6p@chr2:693380..693398, +
1.05e-87FFCP PHASE1:Hg19::chr2:693380..693398,+#_ed32da53e975f90ddf85dbdec5fab8d6p@chr2:693380..693398, +
1.72e-83FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_5369f4516fe0b23a09f6e08324bd9404p4@MEGF11
1.72e-83FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_5369f4516fe0b23a09f6e08324bd9404p4@MEGF11
2.2e-74FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_a1d73e4b29ded95b5cede6da63d4ddd0p7@HOXA10
2.2e-74FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_a1d73e4b29ded95b5cede6da63d4ddd0p7@HOXA10
7.63e-66FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_f16efae389bca4031b8ea7d13e9a80e8p@chr1:1100457..1100470, +
7.63e-66FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_f16efae389bca4031b8ea7d13e9a80e8p@chr1:1100457..1100470, +
6.44e-62FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_333b4f1c8027b8e2cd09ffb5909aad67p4@PAX2
6.44e-62FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_333b4f1c8027b8e2cd09ffb5909aad67p4@PAX2
5.84e-60FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_d8cb4aaddbe9f88c3f54a3cc452d52edp@chr18:3456189..3456200, +
5.84e-60FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_d8cb4aaddbe9f88c3f54a3cc452d52edp@chr18:3456189..3456200, +
6.18e-60FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_84528ad193f3d41939899ddc0f53f3e4p3@PAX2
6.18e-60FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_84528ad193f3d41939899ddc0f53f3e4p3@PAX2
4.45e-59FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_46b83b2838af4d63a1a877f59de47756p6@LRRN4
4.45e-59FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_46b83b2838af4d63a1a877f59de47756p6@LRRN4
3.49e-58FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_f4820d0946c534d206fe4bdee17e41d4p@chr5:74244100..74244117, +
3.49e-58FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_f4820d0946c534d206fe4bdee17e41d4p@chr5:74244100..74244117, +
3.91e-56FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_4c7a7068a3a6f0b40e4b8284ddf16655p2@AB527789
3.91e-56FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_4c7a7068a3a6f0b40e4b8284ddf16655p2@AB527789
3.83e-55FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_f70b0fc3d640b9b0c944cce76816f16cp@chr16:86604624..86604648, +
3.83e-55FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_f70b0fc3d640b9b0c944cce76816f16cp@chr16:86604624..86604648, +
3.51e-54FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_3ef965506cdf402c3d15aa488cc699bap@chr16:86768403..86768437, +
3.51e-54FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_3ef965506cdf402c3d15aa488cc699bap@chr16:86768403..86768437, +
6.09e-53FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_bd9528d5138d577b1a507bb6734c6111p2@CLDN6
6.09e-53FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_bd9528d5138d577b1a507bb6734c6111p2@CLDN6
2.79e-52FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_f15aae7a40b83ff3683873b2a5f5f54fp1@ENST00000418041, p1@ENST00000443104
2.79e-52FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_f15aae7a40b83ff3683873b2a5f5f54fp1@ENST00000418041, p1@ENST00000443104
1.61e-50FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_c4121a4957a3ac56c11fe8f15de10a71p@chr7:7606139..7606151, -
1.61e-50FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_c4121a4957a3ac56c11fe8f15de10a71p@chr7:7606139..7606151, -
1.96e-50FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_309c911905a7ba9f8878d0953db65b8fp3@HNF1B
1.96e-50FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_309c911905a7ba9f8878d0953db65b8fp3@HNF1B
1.73e-49FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_375c92c40e83c5bf501c4fccb4c437c7p@chr7:140227349..140227360, -
1.73e-49FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_375c92c40e83c5bf501c4fccb4c437c7p@chr7:140227349..140227360, -
2.61e-49FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_88e41a9ac721db107200f78cec171415p16@HOXA10
2.61e-49FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_88e41a9ac721db107200f78cec171415p16@HOXA10
3.13e-49FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_a6c70e026514c7979da256bb5db20fbcp2@B3GALT5
3.13e-49FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_a6c70e026514c7979da256bb5db20fbcp2@B3GALT5
4.07e-49FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_997636dc68846103428b3e782f0b06c8p4@AIF1L
4.07e-49FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_997636dc68846103428b3e782f0b06c8p4@AIF1L
1.12e-47FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_6cae71500f959d1cb03a49779ee09cc7p@chr7:140227303..140227330, -
1.12e-47FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_6cae71500f959d1cb03a49779ee09cc7p@chr7:140227303..140227330, -
1.23e-44FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_9e3137ed919a4531e0312cf4f796d39ep3@LRRN4
1.23e-44FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_9e3137ed919a4531e0312cf4f796d39ep3@LRRN4
3.62e-44FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_979585bfa3ec934548d8b4ada87d3be1p@chr21:46826248..46826282, -
3.62e-44FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_979585bfa3ec934548d8b4ada87d3be1p@chr21:46826248..46826282, -
3.06e-43FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_36507fbdf4aac97cde23684f3c5a8ed7p2@LRRN4
3.06e-43FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_36507fbdf4aac97cde23684f3c5a8ed7p2@LRRN4
1.81e-42FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_25c888b5e27d30134084d522992b82dcp@chr15:85403302..85403304, +
1.81e-42FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_25c888b5e27d30134084d522992b82dcp@chr15:85403302..85403304, +
1.82e-42FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_5c607d8ee2b6292fac5059d8885f2793p@chr7:98453821..98453843, -
1.82e-42FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_5c607d8ee2b6292fac5059d8885f2793p@chr7:98453821..98453843, -
2.77e-42FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_ab4fe2d3fff2475ff33c96c049e7ee20p7@LRRN4
2.77e-42FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_ab4fe2d3fff2475ff33c96c049e7ee20p7@LRRN4
7.5e-42FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_879c202bb6a72cef3f8c9f4f1dd3060dp2@PAX2
7.5e-42FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_879c202bb6a72cef3f8c9f4f1dd3060dp2@PAX2
3.59e-41FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_5b7113a5ec5096b5c643b318569153aap16@TJP2
3.59e-41FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_5b7113a5ec5096b5c643b318569153aap16@TJP2
9.39e-41FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_c4bccc7984a3614caf45af9f3e2712f3p1@ENST00000413103
9.39e-41FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_c4bccc7984a3614caf45af9f3e2712f3p1@ENST00000413103
1.7e-40FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_0a4647f6510805c3e9f55df468c0be6cp5@LRRN4
1.7e-40FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_0a4647f6510805c3e9f55df468c0be6cp5@LRRN4
2.9e-40FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_457ca0167e83ae65266ab3e665cd1440p2@PLA2G2F
2.9e-40FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_457ca0167e83ae65266ab3e665cd1440p2@PLA2G2F
8.58e-40FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_470ac077380ba85164cc2e310a6d24a9p3@AIF1L
8.58e-40FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_470ac077380ba85164cc2e310a6d24a9p3@AIF1L
1.21e-39FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_6e9464182d0eadbc594814bbeb88726cp6@GALNT14
1.21e-39FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_6e9464182d0eadbc594814bbeb88726cp6@GALNT14
3.08e-39FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_f49e0ba6b94c99ad1a8ba73605ecca5bp4@AB527789
3.08e-39FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_f49e0ba6b94c99ad1a8ba73605ecca5bp4@AB527789
7.42e-37FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_8345b7c8cba65adfe8e1c95432c12a3ep4@DCDC2
7.42e-37FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_8345b7c8cba65adfe8e1c95432c12a3ep4@DCDC2
1.29e-36FFCP PHASE1:Hg19::chr2:693362..693373,+#_e55efcc4c0fad5763da77f7700713006p@chr2:693362..693373, +
1.29e-36FFCP PHASE2:Hg19::chr2:693362..693373,+#_e55efcc4c0fad5763da77f7700713006p@chr2:693362..693373, +
1.36e-36FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_9891adae8391118c76109b59d7ccb230p1@HOXD4
1.36e-36FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_9891adae8391118c76109b59d7ccb230p1@HOXD4
6.21e-36FFCP PHASE1:Hg19::chr2:176982078..176982095,+#_588d0324b905f309263846dd84e0477ep@chr2:176982078..176982095, +
6.21e-36FFCP PHASE2:Hg19::chr2:176982078..176982095,+#_588d0324b905f309263846dd84e0477ep@chr2:176982078..176982095, +
2.64e-35FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_1da0fdbec5d346dc00d5e03b5b382b18p1@AB527789
2.64e-35FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_1da0fdbec5d346dc00d5e03b5b382b18p1@AB527789
3.85e-35FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_97380d04d0d3b58a2c035c8bfce4beeap3@SULT1C4
3.85e-35FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_97380d04d0d3b58a2c035c8bfce4beeap3@SULT1C4
8.14e-35FFCP PHASE2:Hg19::chr18:43405633..43405645,+#_494657ccca4a6105e70860b67eb1052ep4@SIGLEC15
8.14e-35FFCP PHASE1:Hg19::chr18:43405633..43405645,+#_494657ccca4a6105e70860b67eb1052ep4@SIGLEC15
1.65e-34FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_5fe4a6a35e2dbbf94ae918606b09c65ep1@ENST00000444849
1.65e-34FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_5fe4a6a35e2dbbf94ae918606b09c65ep1@ENST00000444849
1.14e-33FFCP PHASE1:Hg19::chr17:171147..171161,+#_46f09b8debe74cb09767a71fd8256159p@chr17:171147..171161, +
1.14e-33FFCP PHASE2:Hg19::chr17:171147..171161,+#_46f09b8debe74cb09767a71fd8256159p@chr17:171147..171161, +
1.52e-33FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_08e74c46484fb1c54b85b0100dce2d5bp2@C14orf105
1.52e-33FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_08e74c46484fb1c54b85b0100dce2d5bp2@C14orf105
1.8e-33FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_a6be7f28fa1e99db4b816ebf7d973f6dp5@GALNT14
1.8e-33FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_a6be7f28fa1e99db4b816ebf7d973f6dp5@GALNT14
2.35e-33FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_e8c732358c84713fdef069b809d01e84p1@CLDN16
2.35e-33FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_e8c732358c84713fdef069b809d01e84p1@CLDN16
4.12e-33FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_e999852945cdc0bbd8aa74317faf74f0p@chr17:36065029..36065045, -
4.12e-33FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_e999852945cdc0bbd8aa74317faf74f0p@chr17:36065029..36065045, -
8.12e-33FFCP PHASE2:Hg19::chr17:35293950..35293973,-#_d44f6e43dee13235e95e7db6eb48048ep1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
8.12e-33FFCP PHASE1:Hg19::chr17:35293950..35293973,-#_d44f6e43dee13235e95e7db6eb48048ep1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
1.25e-32FFCP PHASE2:Hg19::chr22:30653574..30653606,-#_16773cd93ca0d19cee46a899739a44d0p@chr22:30653574..30653606, -
1.25e-32FFCP PHASE1:Hg19::chr22:30653574..30653606,-#_16773cd93ca0d19cee46a899739a44d0p@chr22:30653574..30653606, -

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