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{{UBERON
{{UBERON
|id=UBERON:0009891
|alt_id=
|name=facial mesenchyme
|namespace=
|def=
|xref=
|is_a=UBERON:0003104
|synonym="face mesenchyme" EXACT [];;"mesenchyme of face" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009891
|is_a=UBERON:0003104
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=facial mesenchyme
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001456
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="face mesenchyme" EXACT [];;"mesenchyme of face" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 18:07, 12 September 2014

Name:facial mesenchyme
Namespace:FANTOM
Synonyms: "face mesenchyme" EXACT []
"mesenchyme of face" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003104(mesenchyme)
part_of:UBERON:0001456(face)



Children

is a:UBERON:0003314 (eye mesenchyme),UBERON:0003323 (mesenchyme of upper jaw)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009891 (facial mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_930fd3d9fd41a8aeb5f0e35287420327p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_930fd3d9fd41a8aeb5f0e35287420327p14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_4b681a217f8e7a5d40dcd03b807a5576p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_4b681a217f8e7a5d40dcd03b807a5576p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_4b681a217f8e7a5d40dcd03b807a5576p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_4b681a217f8e7a5d40dcd03b807a5576p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_4b681a217f8e7a5d40dcd03b807a5576p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_4b681a217f8e7a5d40dcd03b807a5576p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_4b681a217f8e7a5d40dcd03b807a5576p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_4b681a217f8e7a5d40dcd03b807a5576p12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_75809ceded3f35ef49a7b7f5e7ad943ep@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_75809ceded3f35ef49a7b7f5e7ad943ep14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_75809ceded3f35ef49a7b7f5e7ad943ep14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_75809ceded3f35ef49a7b7f5e7ad943ep@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_b70042c91e603b9c297cea143a4c6c78p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_b70042c91e603b9c297cea143a4c6c78p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_eebf8300764649e52c3e584c1e72979bp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_eebf8300764649e52c3e584c1e72979bp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_eebf8300764649e52c3e584c1e72979bp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_eebf8300764649e52c3e584c1e72979bp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_eebf8300764649e52c3e584c1e72979bp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_eebf8300764649e52c3e584c1e72979bp17@RSRC1
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_cda7c19ee9518ff6f76ab343be5eb0c6p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_cda7c19ee9518ff6f76ab343be5eb0c6p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_4a0ca559379440531b20f6e43168bca3p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_4a0ca559379440531b20f6e43168bca3p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_4a0ca559379440531b20f6e43168bca3p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_4a0ca559379440531b20f6e43168bca3p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_4a0ca559379440531b20f6e43168bca3p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_4a0ca559379440531b20f6e43168bca3p7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_4b6ffdbf5a33020a6febaf00aded4435p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_4b6ffdbf5a33020a6febaf00aded4435p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_4b6ffdbf5a33020a6febaf00aded4435p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_4b6ffdbf5a33020a6febaf00aded4435p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_57ec2ff8a9828d0af51b231fd5846ef5p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_57ec2ff8a9828d0af51b231fd5846ef5p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_57ec2ff8a9828d0af51b231fd5846ef5p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_57ec2ff8a9828d0af51b231fd5846ef5p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_57ec2ff8a9828d0af51b231fd5846ef5p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_57ec2ff8a9828d0af51b231fd5846ef5p@chr8:57353779..57353790, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_e250bb612d2654441261ddc728e552bfp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_e250bb612d2654441261ddc728e552bfp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_e250bb612d2654441261ddc728e552bfp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_e250bb612d2654441261ddc728e552bfp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_e250bb612d2654441261ddc728e552bfp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_e250bb612d2654441261ddc728e552bfp12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_d301a19ab2da529ed8cdc1012f6c8898p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_d301a19ab2da529ed8cdc1012f6c8898p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_d301a19ab2da529ed8cdc1012f6c8898p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_d301a19ab2da529ed8cdc1012f6c8898p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_1a382709cb5bfdf222f8a7999a4763fbp@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_1a382709cb5bfdf222f8a7999a4763fbp@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_1a382709cb5bfdf222f8a7999a4763fbp@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_1a382709cb5bfdf222f8a7999a4763fbp@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_618dcdb8eb02b4a502f0c37781b2dd2fp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_618dcdb8eb02b4a502f0c37781b2dd2fp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_618dcdb8eb02b4a502f0c37781b2dd2fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_618dcdb8eb02b4a502f0c37781b2dd2fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_618dcdb8eb02b4a502f0c37781b2dd2fp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_618dcdb8eb02b4a502f0c37781b2dd2fp4@CPZ
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_fe684edc55d4394ae7b368f0b7ca6da2p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_fe684edc55d4394ae7b368f0b7ca6da2p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_e45e25cb863f901b4053b3d09ab4a8c2p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_e45e25cb863f901b4053b3d09ab4a8c2p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_05b81fe0a3d33f780b6783da05aae210p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_05b81fe0a3d33f780b6783da05aae210p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_05b81fe0a3d33f780b6783da05aae210p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_05b81fe0a3d33f780b6783da05aae210p@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_200deedf04683242732787dc36c135ffp4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_200deedf04683242732787dc36c135ffp12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_200deedf04683242732787dc36c135ffp@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_200deedf04683242732787dc36c135ffp4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_200deedf04683242732787dc36c135ffp12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_200deedf04683242732787dc36c135ffp@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_62cdbaba6dd0abb3188ec3f19b9e978fp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_62cdbaba6dd0abb3188ec3f19b9e978fp@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_62cdbaba6dd0abb3188ec3f19b9e978fp@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_62cdbaba6dd0abb3188ec3f19b9e978fp@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_62cdbaba6dd0abb3188ec3f19b9e978fp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_62cdbaba6dd0abb3188ec3f19b9e978fp@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_c5ab1198510fe012bfc15536dfa2d653p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_c5ab1198510fe012bfc15536dfa2d653p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_c5ab1198510fe012bfc15536dfa2d653p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_c5ab1198510fe012bfc15536dfa2d653p7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_620c069908e487ca8e55758ad3224367p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_620c069908e487ca8e55758ad3224367p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_620c069908e487ca8e55758ad3224367p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_620c069908e487ca8e55758ad3224367p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_620c069908e487ca8e55758ad3224367p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_620c069908e487ca8e55758ad3224367p@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_b1bb2a8351a0617dc735a566d780e496p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_b1bb2a8351a0617dc735a566d780e496p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_744f258f22dacfe0a3cf8f728a4f62ebp18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_744f258f22dacfe0a3cf8f728a4f62ebp@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_744f258f22dacfe0a3cf8f728a4f62ebp18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_744f258f22dacfe0a3cf8f728a4f62ebp@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_744f258f22dacfe0a3cf8f728a4f62ebp@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_744f258f22dacfe0a3cf8f728a4f62ebp@chr8:57359975..57359992, -
4.2e-29FFCP PHASE2:Hg19::chr15:52606315..52606320,-#_dd00ec884cca86fb4980a7093e5d6955p@chr15:52606315..52606320, -
4.2e-29FFCP PHASE1:Hg19::chr15:52606315..52606320,-#_dd00ec884cca86fb4980a7093e5d6955p@chr15:52606315..52606320, -

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