UBERON:0011137: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=axial skeletal system | |name=axial skeletal system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:10, 12 September 2014
| Name: | axial skeletal system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Subdivision of the skeletal system which consists of the axial skeleton plus associated joints." [UBERON:cjm] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000075(subdivision of skeletal system) |
|---|
Children
| part of: | UBERON:0002328 (notochord),UBERON:0010323 (cranial skeletal system) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 11929-125I3 (Mallassez-derived cells, donor2)
- 11930-125I4 (Mallassez-derived cells, donor3)
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 11929-125I3 (Mallassez-derived cells, donor2)
- 11930-125I4 (Mallassez-derived cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0011137 (axial skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_88219e40f6759d4b740fc1dfc61e6e3a | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_88219e40f6759d4b740fc1dfc61e6e3a | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_88219e40f6759d4b740fc1dfc61e6e3a | p9@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_88219e40f6759d4b740fc1dfc61e6e3a | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_88219e40f6759d4b740fc1dfc61e6e3a | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_88219e40f6759d4b740fc1dfc61e6e3a | p4@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Ptprq |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_88219e40f6759d4b740fc1dfc61e6e3a | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_88219e40f6759d4b740fc1dfc61e6e3a | p1@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_88219e40f6759d4b740fc1dfc61e6e3a | p2@Espnl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_88219e40f6759d4b740fc1dfc61e6e3a | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_88219e40f6759d4b740fc1dfc61e6e3a | p6@Jag1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_88219e40f6759d4b740fc1dfc61e6e3a | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_88219e40f6759d4b740fc1dfc61e6e3a | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_88219e40f6759d4b740fc1dfc61e6e3a | p1@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr13:78257491..78257498, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_88219e40f6759d4b740fc1dfc61e6e3a | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_88219e40f6759d4b740fc1dfc61e6e3a | p10@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_88219e40f6759d4b740fc1dfc61e6e3a | p2@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_88219e40f6759d4b740fc1dfc61e6e3a | p11@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_88219e40f6759d4b740fc1dfc61e6e3a | p1@Otog |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_88219e40f6759d4b740fc1dfc61e6e3a | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_88219e40f6759d4b740fc1dfc61e6e3a | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_88219e40f6759d4b740fc1dfc61e6e3a | p1@Otol1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_88219e40f6759d4b740fc1dfc61e6e3a | p2@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr11:94371127..94371139, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:172843885..172843890, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_88219e40f6759d4b740fc1dfc61e6e3a | p6@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr6:29428397..29428407, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_88219e40f6759d4b740fc1dfc61e6e3a | p4@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_88219e40f6759d4b740fc1dfc61e6e3a | p3@Strc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_88219e40f6759d4b740fc1dfc61e6e3a | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr10:108316802..108316807, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr11:89702580..89702593, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_88219e40f6759d4b740fc1dfc61e6e3a | p1@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_88219e40f6759d4b740fc1dfc61e6e3a | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_88219e40f6759d4b740fc1dfc61e6e3a | p1@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr13:43699188..43699216, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_88219e40f6759d4b740fc1dfc61e6e3a | p@chr13:43699188..43699216, + |
