FFCP PHASE1:Hg19::chr10:134479878..134479913,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr10:134479878..134479913,+ | |||
|description=CAGE_peak_at_chr10:134479878..134479913,+ | |||
|id=chr10:134479878..134479913,+ | |||
|ontology_enrichment_celltype=CL:1000507!1.59e-09!12;CL:1000494!1.59e-09!12;CL:1000497!2.12e-09!18;CL:0002518!2.12e-09!18;CL:0000055!1.68e-08!180;CL:1000449!6.75e-08!16;CL:0000012!3.09e-07!682;CL:0002057!4.45e-07!42;CL:0000222!4.62e-07!119;CL:0000548!4.68e-07!679;CL:0000004!4.68e-07!679;CL:0000255!4.68e-07!679;CL:0000144!6.93e-07!625;CL:0000057!7.28e-07!75;CL:0002681!9.61e-07!13;CL:0002584!9.61e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.13e-21;10!CL:1000494;1.13e-21;10!CL:1000449;2.73e-18;15!CL:1000497;5.49e-16;17!CL:0002518;5.49e-16;17!CL:0000239;8.36e-15;3!CL:1000615;8.36e-15;3!CL:0002306;8.36e-15;3!CL:0002681;2.34e-13;12!CL:0002584;2.34e-13;12!CL:0000650;3.11e-10;2!CL:1000500;3.11e-10;2!CL:1000618;3.11e-10;2!CL:1001318;3.11e-10;2!CL:0002173;3.11e-10;2!CL:0002582;3.68e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,7.61e-22,10;CL:1000494,7.61e-22,10;CL:1000449,1.65e-18,15;CL:1000497,3.54e-16,17;CL:0002518,3.54e-16,17;CL:0000239,6.86e-15,3;CL:1000615,6.86e-15,3;CL:0002306,6.86e-15,3;CL:0002681,2.31e-13,12;CL:0002584,2.31e-13,12;CL:0000650,5.55e-10,2;CL:1000500,5.55e-10,2;CL:1000618,5.55e-10,2;CL:1001318,5.55e-10,2;CL:0002173,5.55e-10,2;CL:0002582,4.05e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009773!1.59e-09!12;UBERON:0001231!1.59e-09!12;UBERON:0004810!1.59e-09!12;UBERON:0004211!6.75e-08!16;UBERON:0001285!6.75e-08!16;UBERON:0007684!6.75e-08!16;UBERON:0003220!6.75e-08!16;UBERON:0004208!6.75e-08!16;UBERON:0004290!2.56e-07!70;UBERON:0006555!3.17e-07!17;UBERON:0005103!3.17e-07!17;UBERON:0000083!3.17e-07!17;UBERON:0009201!3.17e-07!17;UBERON:0004819!3.17e-07!17;UBERON:0006553!3.17e-07!17;UBERON:0003074!3.17e-07!17;UBERON:0003060!3.17e-07!17;UBERON:0005256!6.02e-07!143;UBERON:0001225!9.61e-07!13;UBERON:0008987!9.61e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.13e-21;10!UBERON:0009773;1.13e-21;10!UBERON:0001231;1.13e-21;10!UBERON:0004810;1.13e-21;10!UBERON:0006555;2.73e-18;15!UBERON:0004819;2.73e-18;15!UBERON:0001285;2.73e-18;15!UBERON:0007684;2.73e-18;15!UBERON:0006853;8.36e-15;3!UBERON:0007685;8.36e-15;3!UBERON:0004134;8.36e-15;3!UBERON:0001225;2.34e-13;12!UBERON:0008987;2.34e-13;12!UBERON:0002113;6.01e-11;24!UBERON:0011143;6.01e-11;24!UBERON:0001851;1.47e-10;15!UBERON:0000353;1.47e-10;15!UBERON:0003567;3.11e-10;2!UBERON:0003838;3.11e-10;2!UBERON:0003586;3.11e-10;2!UBERON:0005169;3.11e-10;2!UBERON:0002321;3.11e-10;2!UBERON:0005215;3.11e-10;2!UBERON:0002303;3.11e-10;2!UBERON:0002319;3.11e-10;2!UBERON:0000489;7.71e-09;29!UBERON:0006554;1.67e-08;30!UBERON:0001008;1.67e-08;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,7.61e-22,10;UBERON:0004211,1.65e-18,15;UBERON:0009773,1.65e-18,15;UBERON:0001231,1.65e-18,15;UBERON:0001285,1.65e-18,15;UBERON:0007684,1.65e-18,15;UBERON:0004208,1.65e-18,15;UBERON:0006555,2.86e-17,16;UBERON:0004819,2.86e-17,16;UBERON:0006853,6.86e-15,3;UBERON:0007685,6.86e-15,3;UBERON:0004134,6.86e-15,3;UBERON:0001225,2.31e-13,12;UBERON:0008987,2.31e-13,12;UBERON:0001851,1.46e-10,15;UBERON:0000353,1.46e-10,15;UBERON:0002113,3.99e-10,26;UBERON:0003918,3.99e-10,26;UBERON:0011143,3.99e-10,26;UBERON:0005095,3.99e-10,26;UBERON:0007687,3.99e-10,26;UBERON:0003567,5.55e-10,2;UBERON:0003838,5.55e-10,2;UBERON:0003586,5.55e-10,2;UBERON:0005169,5.55e-10,2;UBERON:0002321,5.55e-10,2;UBERON:0005215,5.55e-10,2;UBERON:0002303,5.55e-10,2;UBERON:0002319,5.55e-10,2;UBERON:0000489,2.76e-08,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.618831764800233,0,0.672325146451775,0,0.730310090387373,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0.383829398097213,0,0.919421224478927,2.10844143144775,0.739508020333575,0,0,0,0,0,0,0,0,0,0.581592955118259,0.377875943688809,0.242584061187816,1.16214518452842,0,0.619412741790207,0.575384784644301,0,0.709446689665756,0.344745680736619,0,0,1.12945403725563,0.818718450173537,0.674170453335254,0.918251677112708,1.28371610830437,0,0.329851300186716,0,0,0.870627715885752,0.56738522469114,1.24564449799115,2.00998932205395,1.0429658368404,1.3031330682307,0,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0,0,0,0,0,0,0,0.267899184852239,0.44905874525234,0.450445921933289,1.53316637465883,0,0.183201743930407,0,0,0,0,0.12663051166458,0.264818361626438,0,0.354668382198357,0,0,0.49333509683432,0,0.269421344139376,0.490385709340376,0,0,0,0.312160076830321,0,0.149448680551801,0.704606991862589,0.161872944368132,0.140450806702248,0,0.859840221182376,0,0,0,0,0,0.505008341862199,0.125118519871964,0,0,0,0,0.453728732640084,0,0,0.211931901159562,1.20036438433761,0,0,0,0.843881661206331,0.0974370051611986,0.504867548488229,0.0920498986422993,0,1.06502877754984,0.604512589365842,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,0,0.66004457238855,0,0,0.845302752556,0,0,0.257207374262142,0,0.799266537048298,0,0,0,0,0,0,0,0,0.599837947092342,0,0,0,1.19812427745791,0,0,0.289562613335158,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0.368738337083406,0.260650843404249,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0.160853921143607,0,0.308419387605311,0.355123450626254,1.23190734020714,3.11552657510173,0.232420756919918,0,0,0,0.459257792658427,0.910455840033585,0,0.902399225814824,0.924184045252977,0,1.46139224653261,1.68882606228601,0,0.680374821106063,1.51141141271498,0,2.98041081298238,1.00337954770971,3.3133915495855,2.49322802678617,1.34324852833307,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0.580024309752732,0.154048617114644,0.15350367472613,0.275673144969061,0,0.145016693914229,0.255679882248303,0.0890320356467374,0.826424576804891,1.15314040419064,2.16941611240793,0.50578890427775,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0.511795582622668,0,0.318203247925937,1.56989728039846,0,0,0,0.404364963146632,0,0.421258456238981,0,0.731140468893853,0,0.272999822815972,0.141405431953713,1.13008116620243,0.551365343546124,0,0,0,0,0.202910376962704,0.6196469961995,0,0.143411352204052,0,0,0.709522128141196,0,0,0,0.349934720244983,0.865999014529609,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48171507906718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306806047506464,0,0,0.539210106883961,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,0,0,0,0,0,0.435296032902013,0,1.71986032471617,0,0,0,0,0,0,1.37041924646751,2.38457534043588,0.126621591911757,0,0.0801588202515337,0,0,0,0,0,0.432164393964449,1.98804056904692,0,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,1.37280437475228,0,0,0,0,0,0.542999601753713,0,0.653174720218818,0,0,1.02232813071253,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11739237728355,0,0,0.298509605773748,0,1.66441758450784,0,0,0,0.457680136793847,0,0.621748802331122,0,0.477890301491107,0.899606224327209,0.776314784381297,1.65882483136342,1.06336685823198,0,0.150257608997218,0.761610424337591,0.813741466409323,0,2.7926744831047,0,0,0.400027764663154,0,0.336749488765919,0,0,0,0.782982875895635,0,0,0.244736704506468,0.179088841081487,0,0,3.88716121080938,0.964570191354574,0.675769762612291,0,0,0.303859956177382,0,0,0,0,0.327609848846413,0.737318726261158,0.211312123358627,0,0.106691729694141,0,0,0.368211900503681,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.1421595563606,0,0,0.60511520611056,0,0,0.327543835020193,0.147856086217045,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0.0657727735628491,0,1.11231401892069,0,0,0,0,0.431855182437243,0.9555033757741,0,0,0,0,0,0,0,0,0,0.118332000730565,0.340853619036631,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0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| |||
|short_description=p@chr10:134479878..134479913,+ | |||
}} |
Latest revision as of 11:48, 23 July 2015
Short description: | p@chr10:134479878..134479913, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:134479878..134479913, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 7.61e-22 | 10 |
nephron tubule epithelial cell | 7.61e-22 | 10 |
epithelial cell of nephron | 1.65e-18 | 15 |
kidney cell | 3.54e-16 | 17 |
kidney epithelial cell | 3.54e-16 | 17 |
brush border epithelial cell | 6.86e-15 | 3 |
kidney cortex tubule cell | 6.86e-15 | 3 |
epithelial cell of proximal tubule | 6.86e-15 | 3 |
kidney cortical cell | 2.31e-13 | 12 |
renal cortical epithelial cell | 2.31e-13 | 12 |
mesangial cell | 5.55e-10 | 2 |
kidney interstitial cell | 5.55e-10 | 2 |
juxtaglomerular complex cell | 5.55e-10 | 2 |
renal interstitial pericyte | 5.55e-10 | 2 |
extraglomerular mesangial cell | 5.55e-10 | 2 |
visceral preadipocyte | 4.05e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 7.61e-22 | 10 |
nephron epithelium | 1.65e-18 | 15 |
renal tubule | 1.65e-18 | 15 |
nephron tubule | 1.65e-18 | 15 |
nephron | 1.65e-18 | 15 |
uriniferous tubule | 1.65e-18 | 15 |
nephrogenic mesenchyme | 1.65e-18 | 15 |
excretory tube | 2.86e-17 | 16 |
kidney epithelium | 2.86e-17 | 16 |
renal cortex tubule | 6.86e-15 | 3 |
region of nephron tubule | 6.86e-15 | 3 |
proximal tubule | 6.86e-15 | 3 |
cortex of kidney | 2.31e-13 | 12 |
renal parenchyma | 2.31e-13 | 12 |
cortex | 1.46e-10 | 15 |
parenchyma | 1.46e-10 | 15 |
kidney | 3.99e-10 | 26 |
kidney mesenchyme | 3.99e-10 | 26 |
upper urinary tract | 3.99e-10 | 26 |
kidney rudiment | 3.99e-10 | 26 |
kidney field | 3.99e-10 | 26 |
abdomen connective tissue | 5.55e-10 | 2 |
abdominal segment connective tissue | 5.55e-10 | 2 |
trunk connective tissue | 5.55e-10 | 2 |
interstitial tissue | 5.55e-10 | 2 |
extraglomerular mesangium | 5.55e-10 | 2 |
kidney interstitium | 5.55e-10 | 2 |
juxtaglomerular apparatus | 5.55e-10 | 2 |
mesangium | 5.55e-10 | 2 |
cavitated compound organ | 2.76e-08 | 31 |