FFCP PHASE1:Hg19::chr10:18580138..18580153,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:18580138..18580153,+ to FFCP PHASE1:Hg19::chr10:18580138..18580153,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr10:18580138..18580153,+ | |||
|coexpression_cluster_id=C115 | |||
|description=CAGE_peak_at_chr10:18580138..18580153,+ | |||
|id=chr10:18580138..18580153,+ | |||
|ontology_enrichment_celltype=CL:0000242!1.37e-16!2;CL:0000312!3.77e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000123;5.00e-45;2!CL:0000242;5.00e-45;2!CL:0000312;1.04e-18;5!CL:0000240;9.04e-16;6!CL:0000311;9.04e-16;6!CL:0000079;9.04e-16;6!CL:0000237;9.04e-16;6!CL:0002535;2.07e-12;2!CL:0000095;4.14e-11;17!CL:0000362;7.58e-11;9!CL:0002319;5.31e-08;25!CL:0002159;2.68e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.00e-45,2;CL:0000312,1.04e-18,5;CL:0000240,9.04e-16,6;CL:0000311,9.04e-16,6;CL:0000079,9.04e-16,6;CL:0000237,9.04e-16,6;CL:0000036,9.04e-16,6;CL:0000357,9.04e-16,6;CL:0000114,9.04e-16,6;CL:0002535,2.07e-12,2;CL:0000095,4.22e-11,17;CL:0000123,4.22e-11,17;CL:0000362,7.58e-11,9;CL:0002319,5.37e-08,25;CL:0002159,2.68e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.74e-30;3!CL:0000357;9.04e-16;6!CL:0000114;9.04e-16;6 | |||
|ontology_enrichment_disease=DOID:2355!6.16e-09!1;DOID:5409!1.42e-08!4;DOID:4362!6.27e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:5409;8.85e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,8.61e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0003296!3.98e-18!4;UBERON:0010133!3.98e-18!4;UBERON:0000007!1.09e-16!2;UBERON:0005743!5.70e-16!86;UBERON:0001017!1.68e-14!82;UBERON:0000073!3.14e-14!94;UBERON:0001016!3.14e-14!94;UBERON:0003075!6.18e-14!86;UBERON:0007284!6.18e-14!86;UBERON:0001049!2.14e-13!57;UBERON:0005068!2.14e-13!57;UBERON:0006241!2.14e-13!57;UBERON:0007135!2.14e-13!57;UBERON:0002346!3.29e-13!90;UBERON:0002240!9.35e-11!3;UBERON:0000955!1.16e-10!69;UBERON:0006238!1.16e-10!69;UBERON:0001894!1.39e-10!7;UBERON:0006222!1.39e-10!7;UBERON:0004121!1.49e-10!169;UBERON:0003056!2.67e-10!61;UBERON:0000924!3.10e-10!173;UBERON:0006601!3.10e-10!173;UBERON:0002780!3.88e-10!41;UBERON:0001890!3.88e-10!41;UBERON:0006240!3.88e-10!41;UBERON:0003080!7.08e-10!42;UBERON:0002616!1.50e-08!59;UBERON:0007190!1.78e-08!1;UBERON:0007023!2.11e-08!115;UBERON:0002363!2.22e-08!1;UBERON:0007647!2.22e-08!1;UBERON:0010115!2.22e-08!1;UBERON:0000033!1.30e-07!123;UBERON:0000153!3.71e-07!129;UBERON:0007811!3.71e-07!129;UBERON:0000966!5.09e-07!5;UBERON:0005388!5.09e-07!5;UBERON:0001802!5.09e-07!5;UBERON:0005174!8.66e-07!5;UBERON:0001137!8.66e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;3.39e-50;4!UBERON:0010133;3.39e-50;4!UBERON:0000007;2.55e-45;2!UBERON:0001894;4.44e-29;7!UBERON:0000966;2.52e-18;5!UBERON:0005388;2.52e-18;5!UBERON:0001802;2.52e-18;5!UBERON:0006955;2.07e-12;2!UBERON:0004801;2.07e-12;2!UBERON:0001905;2.74e-12;2!UBERON:0002757;2.74e-12;2!UBERON:0010134;2.74e-12;2!UBERON:0005408;2.74e-12;2!UBERON:0001899;2.74e-12;2!UBERON:0001003;7.20e-07;15!UBERON:0007376;7.20e-07;15!UBERON:0002784;8.85e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,3.69e-50,4;UBERON:0010133,3.69e-50,4;UBERON:0000007,2.55e-45,2;UBERON:0001894,4.66e-29,7;UBERON:0006222,4.66e-29,7;UBERON:0000966,1.89e-15,6;UBERON:0005388,1.89e-15,6;UBERON:0001802,1.89e-15,6;UBERON:0006955,2.07e-12,2;UBERON:0004801,2.07e-12,2;UBERON:0001905,2.90e-12,2;UBERON:0002757,2.90e-12,2;UBERON:0010134,2.90e-12,2;UBERON:0005408,2.90e-12,2;UBERON:0001899,2.90e-12,2;UBERON:0010371,3.67e-10,104;UBERON:0003056,4.81e-09,61;UBERON:0001003,7.20e-07,15;UBERON:0007376,7.20e-07,15;UBERON:0007383,7.20e-07,15;UBERON:0003075,8.84e-07,82;UBERON:0007284,8.84e-07,82;UBERON:0002784,9.11e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3369736534424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.931406652723629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691743174681154,0,0,0,0,29.9734339716404,9.99955097414693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,2.01770233331294,26.7064865864118,32.7833555545869,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71543706023975,1.58013611732727,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,2.08886981816315,0.754814217833368,0,0,0,0,0,0,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3369736534424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.931406652723629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691743174681154,0,0,0,0,29.9734339716404,9.99955097414693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,2.01770233331294,26.7064865864118,32.7833555545869,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71543706023975,1.58013611732727,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,2.08886981816315,0.754814217833368,0,0,0,0,0,0,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:18580138..18580153,+ | |||
}} | }} |
Latest revision as of 12:23, 23 July 2015
Short description: | p@chr10:18580138..18580153, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:18580138..18580153, + |
Coexpression cluster: | C115_pituitary_Neural_caudate_putamen_amygdala_medulla_hippocampus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.00e-45 | 2 |
keratinocyte | 1.04e-18 | 5 |
stratified squamous epithelial cell | 9.04e-16 | 6 |
keratin accumulating cell | 9.04e-16 | 6 |
stratified epithelial cell | 9.04e-16 | 6 |
keratinizing barrier epithelial cell | 9.04e-16 | 6 |
epithelial fate stem cell | 9.04e-16 | 6 |
stratified epithelial stem cell | 9.04e-16 | 6 |
surface ectodermal cell | 9.04e-16 | 6 |
epithelial cell of cervix | 2.07e-12 | 2 |
neuron associated cell | 4.22e-11 | 17 |
neuron associated cell (sensu Vertebrata) | 4.22e-11 | 17 |
epidermal cell | 7.58e-11 | 9 |
neural cell | 5.37e-08 | 25 |
general ecto-epithelial cell | 2.68e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 3.69e-50 | 4 |
neuroendocrine gland | 3.69e-50 | 4 |
pituitary gland | 2.55e-45 | 2 |
diencephalon | 4.66e-29 | 7 |
future diencephalon | 4.66e-29 | 7 |
retina | 1.89e-15 | 6 |
photoreceptor array | 1.89e-15 | 6 |
posterior segment of eyeball | 1.89e-15 | 6 |
uterine epithelium | 2.07e-12 | 2 |
cervix epithelium | 2.07e-12 | 2 |
pineal body | 2.90e-12 | 2 |
regional part of epithalamus | 2.90e-12 | 2 |
secretory circumventricular organ | 2.90e-12 | 2 |
circumventricular organ | 2.90e-12 | 2 |
epithalamus | 2.90e-12 | 2 |
ecto-epithelium | 3.67e-10 | 104 |
pre-chordal neural plate | 4.81e-09 | 61 |
skin epidermis | 7.20e-07 | 15 |
outer epithelium | 7.20e-07 | 15 |
enveloping layer of ectoderm | 7.20e-07 | 15 |
neural plate | 8.84e-07 | 82 |
presumptive neural plate | 8.84e-07 | 82 |
regional part of diencephalon | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 8.61e-07 | 4 |