FFCP PHASE1:Hg19::chr10:28367310..28367318,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:28367310..28367318,+ | |||
|coexpression_cluster_id=C199 | |||
|description=CAGE_peak_at_chr10:28367310..28367318,+ | |description=CAGE_peak_at_chr10:28367310..28367318,+ | ||
|id=chr10:28367310..28367318,+ | |id=chr10:28367310..28367318,+ | ||
|ontology_enrichment_celltype=CL:0002620!1.60e-14!23;CL:0002621!2.08e-08!3 | |ontology_enrichment_celltype=CL:0002620!1.60e-14!23;CL:0002621!2.08e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000243;9.29e-22;15!CL:0000125;9.29e-22;15!CL:0000095;1.44e-19;17!CL:0002319;4.85e-14;25!CL:0000306;3.79e-11;4!CL:0002222;3.79e-11;4!CL:0002224;3.79e-11;4!CL:0000128;6.04e-07;7!CL:0000126;6.04e-07;7!CL:0000127;6.04e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,8.97e-22,15;CL:0000125,8.97e-22,15;CL:0000030,8.97e-22,15;CL:0000339,8.97e-22,15;CL:0000095,1.39e-19,17;CL:0000123,1.39e-19,17;CL:0002319,4.74e-14,25;CL:0000306,3.79e-11,4;CL:0002222,3.79e-11,4;CL:0002224,3.79e-11,4;CL:0000333,3.98e-09,41;CL:0000128,6.04e-07,7;CL:0000126,6.04e-07,7;CL:0000127,6.04e-07,7;CL:0002453,6.04e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0006238;4.54e-33;10!CL:0000339;9.29e-22;15!UBERON:0007123;2.86e-09;5 | |||
|ontology_enrichment_disease=DOID:4468!1.98e-12!2 | |ontology_enrichment_disease=DOID:4468!1.98e-12!2 | ||
|ontology_enrichment_disease_v019=DOID:3093;2.11e-30;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,2.01e-30,11 | |||
|ontology_enrichment_uberon=UBERON:0003102!4.54e-10!95;UBERON:0002097!7.63e-10!40;UBERON:0002199!1.38e-08!45;UBERON:0002416!1.38e-08!45;UBERON:0001949!2.08e-08!3;UBERON:0001282!4.01e-07!1;UBERON:0009842!4.01e-07!1;UBERON:0003704!4.01e-07!1;UBERON:0001171!4.01e-07!1;UBERON:0001172!4.01e-07!1;UBERON:0002372!6.76e-07!1;UBERON:0001961!6.76e-07!1;UBERON:0001744!6.76e-07!1;UBERON:0001735!6.76e-07!1 | |ontology_enrichment_uberon=UBERON:0003102!4.54e-10!95;UBERON:0002097!7.63e-10!40;UBERON:0002199!1.38e-08!45;UBERON:0002416!1.38e-08!45;UBERON:0001949!2.08e-08!3;UBERON:0001282!4.01e-07!1;UBERON:0009842!4.01e-07!1;UBERON:0003704!4.01e-07!1;UBERON:0001171!4.01e-07!1;UBERON:0001172!4.01e-07!1;UBERON:0002372!6.76e-07!1;UBERON:0001961!6.76e-07!1;UBERON:0001744!6.76e-07!1;UBERON:0001735!6.76e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;3.79e-11;4!UBERON:0005389;3.79e-11;4!UBERON:0000484;3.79e-11;4!UBERON:0000965;3.79e-11;4!UBERON:0001803;3.79e-11;4!UBERON:0002046;2.86e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,3.79e-11,4;UBERON:0005389,3.79e-11,4;UBERON:0000484,3.79e-11,4;UBERON:0002546,3.79e-11,4;UBERON:0000965,3.79e-11,4;UBERON:0001803,3.79e-11,4;UBERON:0003073,3.79e-11,4;UBERON:0005426,3.79e-11,4;UBERON:0002046,2.97e-09,5;UBERON:0004117,2.97e-09,5;UBERON:0007689,2.97e-09,5;UBERON:0007123,2.97e-09,5;UBERON:0003091,2.97e-09,5 | |||
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|short_description=p@chr10:28367310..28367318,+ | |short_description=p@chr10:28367310..28367318,+ | ||
}} | }} |
Latest revision as of 12:57, 23 July 2015
Short description: | p@chr10:28367310..28367318, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:28367310..28367318, + |
Coexpression cluster: | C199_glioblastoma_B_osteosarcoma_Fibroblast_heart_rhabdomyosarcoma_myxofibrosarcoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 8.97e-22 | 15 |
glial cell | 8.97e-22 | 15 |
glioblast | 8.97e-22 | 15 |
glioblast (sensu Vertebrata) | 8.97e-22 | 15 |
neuron associated cell | 1.39e-19 | 17 |
neuron associated cell (sensu Vertebrata) | 1.39e-19 | 17 |
neural cell | 4.74e-14 | 25 |
crystallin accumulating cell | 3.79e-11 | 4 |
vertebrate lens cell | 3.79e-11 | 4 |
lens epithelial cell | 3.79e-11 | 4 |
migratory neural crest cell | 3.98e-09 | 41 |
oligodendrocyte | 6.04e-07 | 7 |
macroglial cell | 6.04e-07 | 7 |
astrocyte | 6.04e-07 | 7 |
oligodendrocyte precursor cell | 6.04e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 3.79e-11 | 4 |
transparent eye structure | 3.79e-11 | 4 |
simple cuboidal epithelium | 3.79e-11 | 4 |
cranial placode | 3.79e-11 | 4 |
lens of camera-type eye | 3.79e-11 | 4 |
epithelium of lens | 3.79e-11 | 4 |
lens placode | 3.79e-11 | 4 |
lens vesicle | 3.79e-11 | 4 |
thyroid gland | 2.97e-09 | 5 |
pharyngeal pouch | 2.97e-09 | 5 |
thyroid diverticulum | 2.97e-09 | 5 |
pharyngeal pouch 2 | 2.97e-09 | 5 |
thyroid primordium | 2.97e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 2.01e-30 | 11 |