FFCP PHASE1:Hg19::chr12:52910624..52910647,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-163bp_to_S90014_5end | |||
|cluster_id=chr12:52910624..52910647,- | |||
|coexpression_cluster_id=C207 | |||
|description=CAGE_peak_4_at_S90014_5end | |||
|id=chr12:52910624..52910647,- | |||
|ontology_enrichment_celltype=CL:0002076!8.16e-31!43;CL:0000223!3.10e-22!59;CL:0000066!5.03e-20!254;CL:0002159!4.37e-19!13;CL:0002368!6.06e-19!13;CL:0002251!7.96e-15!21;CL:0000622!1.93e-13!5;CL:0000154!4.03e-11!6;CL:0000244!4.08e-11!4;CL:0000731!4.08e-11!4;CL:0002202!1.84e-10!9;CL:0002632!1.84e-10!9;CL:0000076!1.04e-09!62;CL:0002328!4.24e-09!3;CL:0002077!7.56e-09!33;CL:0002623!7.72e-09!3;CL:0000068!9.74e-09!3;CL:0000069!9.74e-09!3;CL:0000307!9.74e-09!3;CL:0000377!9.74e-09!3;CL:0002166!2.03e-08!3;CL:0002621!2.14e-08!3;CL:0000362!2.23e-08!8;CL:0000349!3.27e-08!3;CL:0002577!3.27e-08!3;CL:0000240!1.23e-07!6;CL:0000311!1.23e-07!6;CL:0000079!1.23e-07!6;CL:0000237!1.23e-07!6;CL:0000036!1.23e-07!6;CL:0000357!1.23e-07!6;CL:0000114!1.23e-07!6;CL:0000150!2.99e-07!9;CL:0000575!8.16e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.58e-29;13!CL:0002076;3.11e-28;42!CL:0002159;5.15e-27;14!CL:0000622;4.89e-20;5!CL:0000154;1.18e-16;6!CL:0002202;6.84e-16;9!CL:0002632;6.84e-16;9!CL:0002251;1.35e-14;20!CL:0002328;3.09e-13;3!CL:0002623;8.44e-13;3!CL:0000307;1.09e-12;3!CL:0002166;4.92e-12;3!CL:0002621;4.92e-12;3!CL:0002577;8.25e-12;3!CL:0000240;2.79e-11;6!CL:0000311;2.79e-11;6!CL:0000079;2.79e-11;6!CL:0000237;2.79e-11;6!CL:0000362;3.39e-11;9!CL:0000150;5.30e-11;9!CL:0002077;8.50e-11;34!CL:0000244;4.59e-10;4!CL:0000731;4.59e-10;4!CL:0000575;1.08e-09;2!CL:0000317;5.73e-09;2!CL:1000448;5.73e-09;2!CL:0002308;5.73e-09;2!CL:0002140;5.73e-09;2!CL:0000312;4.64e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.65e-36,42;CL:0002368,4.71e-29,13;CL:0002159,4.89e-27,14;CL:0000223,5.71e-25,58;CL:0000066,8.42e-21,253;CL:0000622,6.59e-20,5;CL:0000154,1.51e-16,6;CL:0002202,7.70e-16,9;CL:0002632,7.70e-16,9;CL:0002251,1.29e-14,20;CL:0002328,3.36e-13,3;CL:0002623,8.46e-13,3;CL:0000068,1.21e-12,3;CL:0000069,1.21e-12,3;CL:0000307,1.21e-12,3;CL:0000377,1.21e-12,3;CL:0002166,3.76e-12,3;CL:0002621,4.06e-12,3;CL:0002077,5.83e-12,34;CL:0002577,7.80e-12,3;CL:0000240,2.62e-11,6;CL:0000311,2.62e-11,6;CL:0000079,2.62e-11,6;CL:0000237,2.62e-11,6;CL:0000036,2.62e-11,6;CL:0000357,2.62e-11,6;CL:0000114,2.62e-11,6;CL:0000362,3.74e-11,9;CL:0000150,6.22e-11,9;CL:0000244,4.53e-10,4;CL:0000731,4.53e-10,4;CL:0000575,1.10e-09,2;CL:0002321,2.46e-09,250;CL:0000317,7.72e-09,2;CL:1000448,7.72e-09,2;CL:0002308,7.72e-09,2;CL:0002140,7.72e-09,2;CL:0000312,4.33e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000223;1.60e-13;58!CL:0000377;1.09e-12;3!CL:0000357;2.79e-11;6!CL:0000114;2.79e-11;6 | |||
|ontology_enrichment_disease=DOID:1749!7.87e-15!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!4.70e-17!21;UBERON:0001004!1.79e-16!72;UBERON:0000165!3.56e-14!28;UBERON:0000930!3.56e-14!28;UBERON:0000161!5.40e-14!35;UBERON:0004119!8.46e-14!169;UBERON:0000925!8.46e-14!169;UBERON:0006595!8.46e-14!169;UBERON:0000365!7.50e-13!5;UBERON:0003102!5.51e-11!95;UBERON:0005910!1.23e-10!6;UBERON:0001444!1.52e-09!48;UBERON:0000065!2.56e-09!53;UBERON:0006562!3.21e-09!11;UBERON:0004815!4.24e-09!3;UBERON:0002031!4.24e-09!3;UBERON:0001949!2.14e-08!3;UBERON:0007196!2.60e-08!14;UBERON:0001558!2.60e-08!14;UBERON:0003408!3.16e-08!10;UBERON:0003729!5.62e-08!5;UBERON:0001723!1.00e-07!3;UBERON:0001033!1.00e-07!3;UBERON:0010056!1.00e-07!3;UBERON:0001042!1.17e-07!10;UBERON:0009145!1.17e-07!10;UBERON:0005631!1.56e-07!14;UBERON:0000158!1.56e-07!14;UBERON:0000974!1.64e-07!10;UBERON:0000078!1.72e-07!18;UBERON:0001044!4.03e-07!6;UBERON:0003293!4.03e-07!6;UBERON:0003294!4.03e-07!6;UBERON:0010047!4.03e-07!6;UBERON:0000167!4.03e-07!6;UBERON:0002185!6.88e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.09e-13;3!UBERON:0002031;3.09e-13;3!UBERON:0001949;4.92e-12;3!UBERON:0000486;1.89e-11;12!UBERON:0000165;7.42e-10;28!UBERON:0007196;2.94e-09;15!UBERON:0001558;2.94e-09;15!UBERON:0000161;2.97e-09;19!UBERON:0000166;2.97e-09;19!UBERON:0001708;3.84e-09;4!UBERON:0008895;3.84e-09;4!UBERON:0001987;5.64e-09;4!UBERON:0002419;5.73e-09;2!UBERON:0007771;5.73e-09;2!UBERON:0003297;5.73e-09;2!UBERON:0001821;5.73e-09;2!UBERON:0003487;5.73e-09;2!UBERON:0001820;5.73e-09;2!UBERON:0000365;3.98e-08;5!UBERON:0002185;4.22e-08;5!UBERON:0011159;2.13e-07;5!UBERON:0003729;2.58e-07;13!UBERON:0001041;4.99e-07;14!UBERON:0010371;7.22e-07;31!UBERON:0005910;7.89e-07;6!UBERON:0005911;9.22e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,6.76e-14,99;UBERON:0004119,1.25e-13,160;UBERON:0000925,1.25e-13,160;UBERON:0006595,1.25e-13,160;UBERON:0004815,3.36e-13,3;UBERON:0002031,3.36e-13,3;UBERON:0001004,4.67e-13,74;UBERON:0001949,4.06e-12,3;UBERON:0000033,9.73e-11,56;UBERON:0000166,2.92e-10,22;UBERON:0000165,1.74e-09,29;UBERON:0000930,1.74e-09,29;UBERON:0000153,2.12e-09,62;UBERON:0007811,2.12e-09,62;UBERON:0001708,3.15e-09,4;UBERON:0008895,3.15e-09,4;UBERON:0007196,3.15e-09,15;UBERON:0001558,3.15e-09,15;UBERON:0001987,5.41e-09,4;UBERON:0004340,5.41e-09,4;UBERON:0000161,6.47e-09,36;UBERON:0002419,7.72e-09,2;UBERON:0007771,7.72e-09,2;UBERON:0003297,7.72e-09,2;UBERON:0001821,7.72e-09,2;UBERON:0003487,7.72e-09,2;UBERON:0001820,7.72e-09,2;UBERON:0005089,7.72e-09,2;UBERON:0005088,7.72e-09,2;UBERON:0000365,3.93e-08,5;UBERON:0002185,4.43e-08,5;UBERON:0001444,1.10e-07,49;UBERON:0011159,1.82e-07,5;UBERON:0003729,2.47e-07,13;UBERON:0005910,7.82e-07,6;UBERON:0000065,9.47e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.51652734687356,5.12050061923025,7.39508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.37879163072847,14.4605932685927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.15797509499322,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,2.45471508531751,2.58124135850103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.2802611309364,7.86812272803337,5.93120937228622,4.0738915869753,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81201501960331,2.18376766658517,1.84307626415102,1.43293636324557,0.871901815541886,3.83382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12189300012382,1.66435439510497,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40354529212299,1.93370076765382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,9.75090369054782,0,0,0,0,0,0,0,0,0,1.15699440752685,4.42037154939744,2.4246415373971,6.97988687903294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21310859268678,3.35151137767894,5.44454924306613,0,3.44404298136984,10.1082885400575,7.53831261012349,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,0,1.22864280839693,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682760689712998,0,0,0,0,0,0,0,0,0,0,0,0,3.20674611840788,0.153900517007594,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587954384486266,0.522355239482415,0.17472666824203,0,0,0,0,2.42472541221049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88555227693436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67717343799633,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85280868296583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,4.03542916747694,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65772931330429,6.828739083758,8.98637560358319,0.430227358820278,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42843150884526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.129177819672012,0.186224142887574,0,0,0,3.9189014621453,0.684466602170562,0.606168477131288,0.143444410785353,0,0.162806537221949,0,0,0,2.34640942403454,0,2.03448089157869,0,0.201273793591026,0 | |||
|short_description=p4@S90014 | |||
}} |
Latest revision as of 09:36, 24 July 2015
Short description: | p4@S90014 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_S90014_5end |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | -163bp_to_S90014_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
surface structure | 6.76e-14 | 99 |
endoderm-derived structure | 1.25e-13 | 160 |
endoderm | 1.25e-13 | 160 |
presumptive endoderm | 1.25e-13 | 160 |
lower respiratory tract epithelium | 3.36e-13 | 3 |
epithelium of bronchus | 3.36e-13 | 3 |
respiratory system | 4.67e-13 | 74 |
gingival epithelium | 4.06e-12 | 3 |
head | 9.73e-11 | 56 |
oral opening | 2.92e-10 | 22 |
mouth | 1.74e-09 | 29 |
stomodeum | 1.74e-09 | 29 |
anterior region of body | 2.12e-09 | 62 |
craniocervical region | 2.12e-09 | 62 |
jaw skeleton | 3.15e-09 | 4 |
splanchnocranium | 3.15e-09 | 4 |
tracheobronchial tree | 3.15e-09 | 15 |
lower respiratory tract | 3.15e-09 | 15 |
placenta | 5.41e-09 | 4 |
allantois | 5.41e-09 | 4 |
orifice | 6.47e-09 | 36 |
skin gland | 7.72e-09 | 2 |
epidermis gland | 7.72e-09 | 2 |
gland of integumental system | 7.72e-09 | 2 |
sebaceous gland | 7.72e-09 | 2 |
skin sebaceous gland | 7.72e-09 | 2 |
sweat gland | 7.72e-09 | 2 |
sweat gland placode | 7.72e-09 | 2 |
sebaceous gland placode | 7.72e-09 | 2 |
urothelium | 3.93e-08 | 5 |
bronchus | 4.43e-08 | 5 |
subdivision of head | 1.10e-07 | 49 |
primary subdivision of cranial skeletal system | 1.82e-07 | 5 |
mouth mucosa | 2.47e-07 | 13 |
transitional epithelium | 7.82e-07 | 6 |
respiratory tract | 9.47e-07 | 54 |