FFCP PHASE1:Hg19::chr13:109921334..109921354,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:109921334..109921354,- | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_at_chr13:109921334..109921354,- | |description=CAGE_peak_at_chr13:109921334..109921354,- | ||
|id=chr13:109921334..109921354,- | |id=chr13:109921334..109921354,- | ||
|ontology_enrichment_celltype=CL:0002623;5.16e-18;3!CL:0000771;1.04e-12;2!CL:1000415;3.04e-12;2!CL:0000094;3.11e-12;8!CL:0000622;5.08e-11;5!CL:0002251;6.92e-10;20!CL:0000154;2.91e-09;6!CL:0000775;3.33e-09;3!CL:0000081;6.41e-09;11!CL:1001319;5.94e-07;1!CL:1000600;5.94e-07;1 | |ontology_enrichment_celltype=CL:0000066!3.53e-18!254;CL:0002251!1.69e-11!21;CL:0000223!2.55e-09!59;CL:0002076!4.97e-09!43;CL:0000076!3.10e-08!62;CL:0002623!1.44e-07!3;CL:0002150!1.57e-07!3;CL:0000861!1.57e-07!3 | ||
| | |ontology_enrichment_celltype_v019=CL:0002623;5.16e-18;3!CL:0000771;1.04e-12;2!CL:1000415;3.04e-12;2!CL:0000094;3.11e-12;8!CL:0000622;5.08e-11;5!CL:0002251;6.92e-10;20!CL:0000154;2.91e-09;6!CL:0000775;3.33e-09;3!CL:0000081;6.41e-09;11!CL:1001319;5.94e-07;1!CL:1000600;5.94e-07;1 | ||
|ontology_enrichment_disease=DOID:1749;1.15e-19;14!DOID:3111;1.97e-07;1!DOID:3603;1.97e-07;1 | |ontology_enrichment_celltype_v019_2=CL:0002623,3.77e-18,3;CL:0000771,9.00e-13,2;CL:0000094,2.86e-12,8;CL:1000415,4.06e-12,2;CL:0000622,4.22e-11,5;CL:0002251,8.22e-10,20;CL:0000154,2.50e-09,6;CL:0000775,3.27e-09,3;CL:0000081,6.04e-09,11;CL:0000066,4.16e-08,253;CL:1001319,8.67e-07,1;CL:1000600,8.67e-07,1 | ||
|ontology_enrichment_uberon=UBERON:0002294;1.11e-20;7!UBERON:0001173;1.11e-20;7!UBERON:0002394;4.79e-14;4!UBERON:0003928;4.79e-14;4!UBERON:0001044;2.91e-09;6!UBERON:0003293;2.91e-09;6!UBERON:0003294;2.91e-09;6!UBERON:0010047;2.91e-09;6!UBERON:0003408;2.91e-09;6!UBERON:0000167;2.91e-09;6!UBERON:0002110;1.88e-08;3!UBERON:0000161;1.85e-07;19!UBERON:0000166;1.85e-07;19!UBERON:0001282;2.59e-07;1!UBERON:0004913;2.59e-07;1!UBERON:0009842;2.59e-07;1!UBERON:0003703;2.59e-07;1!UBERON:0003704;2.59e-07;1!UBERON:0001171;2.59e-07;1!UBERON:0001172;2.59e-07;1!UBERON:0001174;2.59e-07;1!UBERON:0004914;2.59e-07;1!UBERON:0000997;5.94e-07;1!UBERON:0004645;5.94e-07;1!UBERON:0007195;5.94e-07;1!UBERON:0002171;5.94e-07;1!UBERON:0005056;5.94e-07;1!UBERON:0006518;5.94e-07;1!UBERON:0008949;5.94e-07;1!UBERON:0004176;5.94e-07;1!UBERON:0000101;5.94e-07;1!UBERON:0001256;5.94e-07;1!UBERON:0002167;5.94e-07;1!UBERON:0001259;5.94e-07;1!UBERON:0003343;9.06e-07;4!UBERON:0004785;9.06e-07;4!UBERON:0001041;9.84e-07;14 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!3.77e-26!106;DOID:1749!1.12e-18!14;DOID:0050687!6.41e-18!143;DOID:162!1.67e-12!235;DOID:14566!6.11e-12!239;DOID:1324!1.10e-08!15;DOID:0050615!4.95e-08!16;DOID:4556!6.23e-07!3 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.15e-19;14!DOID:3111;1.97e-07;1!DOID:3603;1.97e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.39e-19,14;DOID:305,2.20e-17,106;DOID:0050687,8.62e-12,143;DOID:3111,1.98e-07,1;DOID:3603,1.98e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001007!3.49e-12!155;UBERON:0001555!3.49e-12!155;UBERON:0007026!3.49e-12!155;UBERON:0004119!9.84e-12!169;UBERON:0000925!9.84e-12!169;UBERON:0006595!9.84e-12!169;UBERON:0002294!3.41e-11!7;UBERON:0001173!3.41e-11!7;UBERON:0004912!3.41e-11!7;UBERON:0005911!5.67e-11!82;UBERON:0000077!1.70e-10!130;UBERON:0001041!7.39e-10!98;UBERON:0002394!1.67e-09!4;UBERON:0003928!1.67e-09!4;UBERON:0001004!4.07e-09!72;UBERON:0004921!7.03e-09!129;UBERON:0004185!7.03e-09!129;UBERON:0003343!1.14e-08!4;UBERON:0004785!1.14e-08!4;UBERON:0002048!2.12e-08!22;UBERON:0000117!2.12e-08!22;UBERON:0000171!2.12e-08!22;UBERON:0000170!2.12e-08!22;UBERON:0005597!2.12e-08!22;UBERON:0000118!2.12e-08!22;UBERON:0000466!5.11e-08!126;UBERON:0000161!7.24e-08!35;UBERON:0000166!9.09e-08!21;UBERON:0005178!1.43e-07!34;UBERON:0002224!1.43e-07!34;UBERON:0005181!2.90e-07!35;UBERON:0003729!6.60e-07!5;UBERON:0005153!7.39e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;1.11e-20;7!UBERON:0001173;1.11e-20;7!UBERON:0002394;4.79e-14;4!UBERON:0003928;4.79e-14;4!UBERON:0001044;2.91e-09;6!UBERON:0003293;2.91e-09;6!UBERON:0003294;2.91e-09;6!UBERON:0010047;2.91e-09;6!UBERON:0003408;2.91e-09;6!UBERON:0000167;2.91e-09;6!UBERON:0002110;1.88e-08;3!UBERON:0000161;1.85e-07;19!UBERON:0000166;1.85e-07;19!UBERON:0001282;2.59e-07;1!UBERON:0004913;2.59e-07;1!UBERON:0009842;2.59e-07;1!UBERON:0003703;2.59e-07;1!UBERON:0003704;2.59e-07;1!UBERON:0001171;2.59e-07;1!UBERON:0001172;2.59e-07;1!UBERON:0001174;2.59e-07;1!UBERON:0004914;2.59e-07;1!UBERON:0000997;5.94e-07;1!UBERON:0004645;5.94e-07;1!UBERON:0007195;5.94e-07;1!UBERON:0002171;5.94e-07;1!UBERON:0005056;5.94e-07;1!UBERON:0006518;5.94e-07;1!UBERON:0008949;5.94e-07;1!UBERON:0004176;5.94e-07;1!UBERON:0000101;5.94e-07;1!UBERON:0001256;5.94e-07;1!UBERON:0002167;5.94e-07;1!UBERON:0001259;5.94e-07;1!UBERON:0003343;9.06e-07;4!UBERON:0004785;9.06e-07;4!UBERON:0001041;9.84e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002294,5.20e-16,9;UBERON:0001173,5.20e-16,9;UBERON:0004912,5.20e-16,9;UBERON:0002394,1.49e-09,6;UBERON:0003928,1.49e-09,6;UBERON:0001044,2.50e-09,6;UBERON:0003293,2.50e-09,6;UBERON:0003294,2.50e-09,6;UBERON:0010047,2.50e-09,6;UBERON:0000167,2.50e-09,6;UBERON:0002110,2.28e-08,3;UBERON:0006242,2.28e-08,3;UBERON:0001282,2.23e-07,1;UBERON:0009842,2.23e-07,1;UBERON:0003704,2.23e-07,1;UBERON:0001171,2.23e-07,1;UBERON:0001172,2.23e-07,1;UBERON:0004913,2.52e-07,1;UBERON:0003703,2.52e-07,1;UBERON:0001174,2.52e-07,1;UBERON:0004914,2.52e-07,1;UBERON:0002171,4.57e-07,1;UBERON:0006518,4.57e-07,1;UBERON:0008949,4.57e-07,1;UBERON:0000101,4.57e-07,1;UBERON:0002167,4.57e-07,1;UBERON:0000997,7.29e-07,1;UBERON:0005056,7.29e-07,1;UBERON:0004645,8.67e-07,1;UBERON:0001256,8.67e-07,1;UBERON:0001259,8.67e-07,1;UBERON:0007195,9.18e-07,1 | |||
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| ||
|short_description=p@chr13:109921334..109921354,- | |short_description=p@chr13:109921334..109921354,- | ||
}} | }} |
Latest revision as of 14:26, 24 July 2015
Short description: | p@chr13:109921334..109921354, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:109921334..109921354, - |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 3.77e-18 | 3 |
eosinophil | 9.00e-13 | 2 |
granulocyte | 2.86e-12 | 8 |
epithelial cell of gall bladder | 4.06e-12 | 2 |
acinar cell | 4.22e-11 | 5 |
epithelial cell of alimentary canal | 8.22e-10 | 20 |
protein secreting cell | 2.50e-09 | 6 |
neutrophil | 3.27e-09 | 3 |
blood cell | 6.04e-09 | 11 |
epithelial cell | 4.16e-08 | 253 |
bladder cell | 8.67e-07 | 1 |
lower urinary tract cell | 8.67e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
biliary system | 5.20e-16 | 9 |
biliary tree | 5.20e-16 | 9 |
biliary bud | 5.20e-16 | 9 |
bile duct | 1.49e-09 | 6 |
digestive system duct | 1.49e-09 | 6 |
saliva-secreting gland | 2.50e-09 | 6 |
gland of oral region | 2.50e-09 | 6 |
gland of foregut | 2.50e-09 | 6 |
oral gland | 2.50e-09 | 6 |
oral cavity | 2.50e-09 | 6 |
gallbladder | 2.28e-08 | 3 |
gall bladder primordium | 2.28e-08 | 3 |
intralobular bile duct | 2.23e-07 | 1 |
acinus | 2.23e-07 | 1 |
intrahepatic bile duct | 2.23e-07 | 1 |
portal lobule | 2.23e-07 | 1 |
hepatic acinus | 2.23e-07 | 1 |
hepatopancreatic ampulla | 2.52e-07 | 1 |
extrahepatic bile duct | 2.52e-07 | 1 |
common bile duct | 2.52e-07 | 1 |
duodenal papilla | 2.52e-07 | 1 |
lower lobe of right lung | 4.57e-07 | 1 |
right lung lobe | 4.57e-07 | 1 |
lower lobe of lung | 4.57e-07 | 1 |
lobe of lung | 4.57e-07 | 1 |
right lung | 4.57e-07 | 1 |
mammalian vulva | 7.29e-07 | 1 |
external female genitalia | 7.29e-07 | 1 |
urinary bladder urothelium | 8.67e-07 | 1 |
wall of urinary bladder | 8.67e-07 | 1 |
mucosa of urinary bladder | 8.67e-07 | 1 |
stroma of bone marrow | 9.18e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.39e-19 | 14 |
carcinoma | 2.20e-17 | 106 |
cell type cancer | 8.62e-12 | 143 |
cystadenocarcinoma | 1.98e-07 | 1 |
mucinous cystadenocarcinoma | 1.98e-07 | 1 |