FFCP PHASE1:Hg19::chr13:43636294..43636306,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:43636294..43636306,+ | |||
|coexpression_cluster_id=C68 | |coexpression_cluster_id=C68 | ||
|description=CAGE_peak_at_chr13:43636294..43636306,+ | |description=CAGE_peak_at_chr13:43636294..43636306,+ | ||
|id=chr13:43636294..43636306,+ | |id=chr13:43636294..43636306,+ | ||
|ontology_enrichment_celltype=CL:0000349!2.55e-19!3;CL:0002577!2.55e-19!3;CL:0002541!5.97e-19!3;CL:0002536!2.71e-13!2;CL:0002097!1.22e-12!2;CL:0002537!5.26e-12!5;CL:0000080!2.38e-09!6;CL:0000174!1.02e-08!3;CL:1001319!4.89e-07!1;CL:1000600!4.89e-07!1;CL:0000083!7.42e-07!4 | |ontology_enrichment_celltype=CL:0000349!2.55e-19!3;CL:0002577!2.55e-19!3;CL:0002541!5.97e-19!3;CL:0002536!2.71e-13!2;CL:0002097!1.22e-12!2;CL:0002537!5.26e-12!5;CL:0000080!2.38e-09!6;CL:0000174!1.02e-08!3;CL:1001319!4.89e-07!1;CL:1000600!4.89e-07!1;CL:0000083!7.42e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.25e-73;19!CL:0002577;3.67e-43;3!CL:0002536;4.23e-29;2!CL:0002537;9.47e-27;5!CL:0002541;7.16e-20;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.51e-73,19;CL:0002577,3.41e-43,3;CL:0002536,5.25e-29,2;CL:0002537,9.89e-27,5;CL:0002541,7.88e-20,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:170!6.66e-16!6;DOID:1793!7.42e-07!4 | |ontology_enrichment_disease=DOID:170!6.66e-16!6;DOID:1793!7.42e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:4929;2.31e-08;2!DOID:3493;2.77e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,2.31e-08,2;DOID:3493,2.67e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!4.28e-61!14;UBERON:0000158!4.28e-61!14;UBERON:0000478!5.19e-54!24;UBERON:0003124!4.24e-42!7;UBERON:0001987!6.14e-25!4;UBERON:0004340!6.14e-25!4;UBERON:0000305!3.22e-22!7;UBERON:0004871!2.03e-19!8;UBERON:0000476!5.97e-19!3;UBERON:0000920!5.97e-19!3;UBERON:0004923!1.57e-15!57;UBERON:0001264!1.16e-09!10;UBERON:0003922!1.16e-09!10;UBERON:0003923!1.16e-09!10;UBERON:0003924!1.16e-09!10;UBERON:0003921!1.16e-09!10;UBERON:0001045!8.60e-09!11;UBERON:0002369!1.02e-08!3;UBERON:0001235!1.02e-08!3;UBERON:0006858!1.02e-08!3;UBERON:0002075!5.57e-08!18;UBERON:0002114!1.88e-07!12;UBERON:0001000!3.02e-07!1;UBERON:0005352!3.02e-07!1;UBERON:0004645!4.89e-07!1;UBERON:0001256!4.89e-07!1;UBERON:0001259!4.89e-07!1 | |ontology_enrichment_uberon=UBERON:0005631!4.28e-61!14;UBERON:0000158!4.28e-61!14;UBERON:0000478!5.19e-54!24;UBERON:0003124!4.24e-42!7;UBERON:0001987!6.14e-25!4;UBERON:0004340!6.14e-25!4;UBERON:0000305!3.22e-22!7;UBERON:0004871!2.03e-19!8;UBERON:0000476!5.97e-19!3;UBERON:0000920!5.97e-19!3;UBERON:0004923!1.57e-15!57;UBERON:0001264!1.16e-09!10;UBERON:0003922!1.16e-09!10;UBERON:0003923!1.16e-09!10;UBERON:0003924!1.16e-09!10;UBERON:0003921!1.16e-09!10;UBERON:0001045!8.60e-09!11;UBERON:0002369!1.02e-08!3;UBERON:0001235!1.02e-08!3;UBERON:0006858!1.02e-08!3;UBERON:0002075!5.57e-08!18;UBERON:0002114!1.88e-07!12;UBERON:0001000!3.02e-07!1;UBERON:0005352!3.02e-07!1;UBERON:0004645!4.89e-07!1;UBERON:0001256!4.89e-07!1;UBERON:0001259!4.89e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.28e-70;24!UBERON:0005631;4.14e-69;10!UBERON:0000158;4.14e-69;10!UBERON:0000305;5.21e-51;7!UBERON:0001987;1.39e-32;4!UBERON:0003124;7.16e-20;3!UBERON:0000920;7.16e-20;3!UBERON:0004923;6.05e-09;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.86e-100,14;UBERON:0000158,4.86e-100,14;UBERON:0000478,3.51e-70,24;UBERON:0000305,6.40e-51,7;UBERON:0003124,1.79e-50,7;UBERON:0004871,1.37e-44,8;UBERON:0001987,1.32e-32,4;UBERON:0004340,1.32e-32,4;UBERON:0004923,1.40e-20,66;UBERON:0000920,7.88e-20,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.09220686065086,4.22027165165526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,3.03127571446259,4.99306318531491,4.83824469327489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.7352627680465,9.79983446747707,30.7160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,9.8890359516895,0.549585560411174,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48260564340311,0.370691816839509,0.104421949505455,0,0,0,0,0.19566461893209,0,0.394584402849391,0,0,0,0,0.103688191397247,0.664653872707185,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09726132484042,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80095503034311,0,0,0.36757959813938,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.162806537221949,0,0,2.24563005266467,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.09220686065086,4.22027165165526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,3.03127571446259,4.99306318531491,4.83824469327489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.7352627680465,9.79983446747707,30.7160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,9.8890359516895,0.549585560411174,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48260564340311,0.370691816839509,0.104421949505455,0,0,0,0,0.19566461893209,0,0.394584402849391,0,0,0,0,0.103688191397247,0.664653872707185,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09726132484042,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80095503034311,0,0,0.36757959813938,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.162806537221949,0,0,2.24563005266467,0,0,0,0,0,0 | ||
|short_description=p@chr13:43636294..43636306,+ | |short_description=p@chr13:43636294..43636306,+ | ||
}} | }} |
Latest revision as of 16:08, 24 July 2015
Short description: | p@chr13:43636294..43636306, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:43636294..43636306, + |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.51e-73 | 19 |
placental epithelial cell | 3.41e-43 | 3 |
amniotic epithelial cell | 5.25e-29 | 2 |
amnion mesenchymal stem cell | 9.89e-27 | 5 |
chorionic membrane mesenchymal stem cell | 7.88e-20 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.86e-100 | 14 |
membranous layer | 4.86e-100 | 14 |
extraembryonic structure | 3.51e-70 | 24 |
amnion | 6.40e-51 | 7 |
chorion | 1.79e-50 | 7 |
somatic layer of lateral plate mesoderm | 1.37e-44 | 8 |
placenta | 1.32e-32 | 4 |
allantois | 1.32e-32 | 4 |
organ component layer | 1.40e-20 | 66 |
egg chorion | 7.88e-20 | 3 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 2.31e-08 | 2 |
signet ring cell adenocarcinoma | 2.67e-08 | 2 |