FFCP PHASE1:Hg19::chr14:106322148..106322185,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-75bp_to_HM995588_5end | |||
|cluster_id=chr14:106322148..106322185,+ | |||
|coexpression_cluster_id=C350 | |||
|description=CAGE_peak_1_at_HM995588_5end | |||
|id=chr14:106322148..106322185,+ | |||
|ontology_enrichment_celltype=CL:0000945!6.42e-47!24;CL:0000826!6.42e-47!24;CL:0000236!1.97e-24!14;CL:0000542!2.87e-20!53;CL:0000051!2.87e-20!53;CL:0000838!1.44e-18!52;CL:0002087!2.71e-08!119;CL:0000738!6.79e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.38e-65;24!CL:0000236;5.63e-34;13!CL:0000542;3.38e-21;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.95e-65,24;CL:0000826,1.95e-65,24;CL:0000236,1.76e-31,14;CL:0000542,3.30e-31,53;CL:0000051,3.30e-31,53;CL:0000838,3.34e-28,52;CL:0002087,4.01e-12,115;CL:0002031,5.04e-10,120;CL:0000738,1.12e-09,136;CL:0002032,1.33e-07,161;CL:0000837,1.33e-07,161;CL:0000037,3.90e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000051;3.38e-21;53!UBERON:0004872;9.78e-08;7!UBERON:0001045;6.56e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:12603;2.82e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,2.99e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.75e-18!115;UBERON:0000178!3.10e-14!15;UBERON:0000179!3.10e-14!15;UBERON:0000463!3.10e-14!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.36e-17;15!UBERON:0000179;6.36e-17;15!UBERON:0000463;6.36e-17;15!UBERON:0002390;1.19e-13;32!UBERON:0002193;7.24e-11;42!UBERON:0002106;1.40e-08;3!UBERON:0000029;2.22e-07;1!UBERON:0001154;6.56e-07;1!UBERON:0001153;6.56e-07;1!UBERON:0009854;6.56e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.45e-17,15;UBERON:0000179,6.45e-17,15;UBERON:0000463,6.45e-17,15;UBERON:0007023,6.65e-09,114;UBERON:0002106,1.60e-08,3;UBERON:0004854,1.60e-08,3;UBERON:0009034,1.60e-08,3;UBERON:0002095,1.60e-08,3;UBERON:0004782,1.60e-08,3;UBERON:0003281,1.60e-08,3;UBERON:0009664,1.60e-08,3;UBERON:0002296,1.60e-08,3;UBERON:0005602,1.60e-08,3;UBERON:0001179,1.60e-08,3;UBERON:0006293,1.60e-08,3;UBERON:0000029,2.22e-07,1;UBERON:0005409,3.85e-07,25;UBERON:0001154,7.15e-07,1;UBERON:0001153,7.15e-07,1;UBERON:0001045,7.15e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.49513948857586,6.15754420874593,7.71365656874057,0,0,0.154816123316076,0,0,0,3.95082722959538,5.40243083452202,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.73069305631066,3.55803701545422,5.54749289336459,2.80277190925209,1.14950487990897,3.96626923670917,0,9.10740750575117,4.11066032559657,3.82273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,1.52927441428475,1.13929437434833,1.90585420366231,2.05681136543097,0,1.62009431171434,2.37937552888281,0,0,0,6.13150477914872,0.865615277858669,0,0,0,0,0,0,0,0.228234679033192,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,2.21027132424918,0,0,20.5551625119986,0,0,0,0,0.295930216910801,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,1.14994833854341,0,0,0,0,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0,1.13735843331278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677386656526276,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0,0,0.414239055347196,10.9156524798629,0,3.16660755790329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.867479195013787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0.548257766857182,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0.857718530119876,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77500563648273,0.218559560503957,0,0,0,0,0,0,0,5.07513157091209,2.12711030312805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0,0.0636471582781649,0.202117188958219,0,0,1.48174516632093,0.502055437748735,0,0,0,0,0,0,0,0,0,1.81146414231924,0 | |||
|short_description=p1@HM995588 | |||
}} |
Latest revision as of 18:41, 24 July 2015
Short description: | p1@HM995588 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HM995588_5end |
Coexpression cluster: | C350_b_lymph_acute_CD19_lymphoma_spleen_B |
Association with transcript: | -75bp_to_HM995588_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.95e-65 | 24 |
pro-B cell | 1.95e-65 | 24 |
B cell | 1.76e-31 | 14 |
lymphocyte | 3.30e-31 | 53 |
common lymphoid progenitor | 3.30e-31 | 53 |
lymphoid lineage restricted progenitor cell | 3.34e-28 | 52 |
nongranular leukocyte | 4.01e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 5.04e-10 | 120 |
leukocyte | 1.12e-09 | 136 |
hematopoietic oligopotent progenitor cell | 1.33e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.33e-07 | 161 |
hematopoietic stem cell | 3.90e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 6.45e-17 | 15 |
haemolymphatic fluid | 6.45e-17 | 15 |
organism substance | 6.45e-17 | 15 |
adult organism | 6.65e-09 | 114 |
spleen | 1.60e-08 | 3 |
gastrointestinal system mesentery | 1.60e-08 | 3 |
stomach region | 1.60e-08 | 3 |
mesentery | 1.60e-08 | 3 |
gastrointestinal system serosa | 1.60e-08 | 3 |
mesentery of stomach | 1.60e-08 | 3 |
gut mesentery | 1.60e-08 | 3 |
dorsal mesentery | 1.60e-08 | 3 |
dorsal mesogastrium | 1.60e-08 | 3 |
peritoneal cavity | 1.60e-08 | 3 |
spleen primordium | 1.60e-08 | 3 |
lymph node | 2.22e-07 | 1 |
gastrointestinal system | 3.85e-07 | 25 |
vermiform appendix | 7.15e-07 | 1 |
caecum | 7.15e-07 | 1 |
midgut | 7.15e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 2.99e-07 | 1 |