FFCP PHASE1:Hg19::chr16:90001394..90001405,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:90001394..90001405,+ | |||
|description=CAGE_peak_at_chr16:90001394..90001405,+ | |description=CAGE_peak_at_chr16:90001394..90001405,+ | ||
|id=chr16:90001394..90001405,+ | |id=chr16:90001394..90001405,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.52e-20!180;CL:0002321!6.60e-19!248;CL:0000220!1.02e-18!246;CL:0000393!7.99e-16!60;CL:0000211!7.99e-16!60;CL:0000680!2.16e-13!57;CL:0000056!2.16e-13!57;CL:0000355!2.16e-13!57;CL:0000183!3.16e-13!59;CL:0000222!1.43e-12!119;CL:0000187!2.96e-12!54;CL:0000192!3.84e-10!42;CL:0000514!3.84e-10!42;CL:0000359!2.02e-08!32;CL:0000047!5.01e-07!8;CL:0000057!6.52e-07!75;CL:0000144!8.31e-07!625 | |ontology_enrichment_celltype=CL:0000055!1.52e-20!180;CL:0002321!6.60e-19!248;CL:0000220!1.02e-18!246;CL:0000393!7.99e-16!60;CL:0000211!7.99e-16!60;CL:0000680!2.16e-13!57;CL:0000056!2.16e-13!57;CL:0000355!2.16e-13!57;CL:0000183!3.16e-13!59;CL:0000222!1.43e-12!119;CL:0000187!2.96e-12!54;CL:0000192!3.84e-10!42;CL:0000514!3.84e-10!42;CL:0000359!2.02e-08!32;CL:0000047!5.01e-07!8;CL:0000057!6.52e-07!75;CL:0000144!8.31e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000540;6.28e-12;6!CL:0000404;6.28e-12;6!CL:0002540;2.26e-07;6!CL:0002319;2.27e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.04e-14,8;CL:0000540,9.83e-12,6;CL:0000031,9.83e-12,6;CL:0000404,9.83e-12,6;CL:0000393,7.89e-10,61;CL:0000211,7.89e-10,61;CL:0002540,2.84e-07,6;CL:0002319,3.28e-07,25;CL:0002321,5.41e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000031;6.28e-12;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.47e-07;3!DOID:127;2.47e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.53e-07,3;DOID:127,2.53e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000119!9.04e-15!312;UBERON:0000483!4.15e-14!309;UBERON:0000914!8.19e-14!83;UBERON:0002329!8.19e-14!83;UBERON:0003077!8.19e-14!83;UBERON:0003059!8.19e-14!83;UBERON:0007282!8.19e-14!83;UBERON:0009618!8.19e-14!83;UBERON:0007285!8.19e-14!83;UBERON:0005256!1.22e-12!143;UBERON:0000475!1.85e-12!365;UBERON:0000486!3.59e-12!82;UBERON:0004290!9.91e-12!70;UBERON:0001134!2.42e-11!61;UBERON:0002036!2.42e-11!61;UBERON:0003082!2.42e-11!61;UBERON:0002385!1.94e-10!63;UBERON:0001015!1.94e-10!63;UBERON:0000383!1.94e-10!63;UBERON:0002100!2.58e-08!216;UBERON:0000468!3.07e-08!659;UBERON:0000481!3.17e-08!347;UBERON:0000025!6.87e-08!194;UBERON:0001637!1.00e-07!42;UBERON:0003509!1.00e-07!42;UBERON:0004572!1.00e-07!42;UBERON:0000467!3.35e-07!625;UBERON:0004111!4.34e-07!241;UBERON:0000480!4.47e-07!626;UBERON:0000922!7.84e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.79e-08,78 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0.281908808191942,1.0007329835313,0,0.872338524100369,0,0.631719873426831,0,0.245733936501509,4.18680700783456,0,0.527533956456907,0,1.32558950291166,1.34465029290355,0.602694528023977,2.19093027116212,0.975865597581014,0.369363174230364,0.408001382488506,0,0.572471974262113,4.24310717725941,1.12988375635323,0,0,0,0,0,0,0,0,0,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0,0.144846518960824,0,0.486634870302636,0.567208902984407,2.4390233720882,0.966182642624386,0.0654895377488563,0,0.741568885568859,0,0,0.132957960518865,0,0,0,0,0,0,0,0,2.47606237746061,0.417989933073621,0.258416759169329,0.35576626268671,0,1.20848795132744,0.760272105718513,0.976248230192678,0,2.43042584364528,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0.436094052142534,0.496971951695318,1.39293562831038,0.529636723252875,0.573673241497627,2.4826786753885,0.560677600142307,0,0.74000264525148,0,0.67355336034844,0.490385709340376,0.151357427644931,0,0,1.24864030732128,0,0.298897361103602,1.05691048779388,0.161872944368132,0.561803226808994,0,1.22834317311768,0.309977343527296,0,0.989067717114227,0,0,0.336672227908132,1.12606667884768,0,0,1.5324389789951,0.150238058906597,0.226864366320042,0.538168907066586,0,0,0,0.206105058476878,0.257640540045629,0,0.675105328965065,1.65642908774038,0.504867548488229,0,0.646584227275248,0.710019185033229,2.31729825923573,1.18692414617341,0.386521706326594,0.545492241181669,0.286804595389004,0.243947412259191,0.132529768321485,0.464775771478074,1.45125477021519,0.252320850875628,1.09493207722749,0,1.92972281457866,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.4115740113314,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0.380508304469197,0.790204397959275,0.858486162094873,0,0,0.148631162288728,3.74935335947108,1.34385702559088,1.13420077793909,0,0,1.15014803749563,0,0.968532774145487,0.207328115540772,0,0.25248486685276,0.253991577168676,0.381988425558278,0,0,0.514137463516618,0.901029173531752,0,0.224262168690721,0.87192013766656,0.66004457238855,0.517086863031111,0,0,0,0,1.28603687131071,1.41849132023278,2.93064396917709,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,1.73737568001095,3.6985738059069,0.179060963239896,0,0,0,0,1.77866236955724,1.30139853857622,3.09315525111078,5.69555302136786,12.1208362814101,0,0,0,0.24538298343828,0,0.271265023699736,0.207970861530807,0.713715955188647,0,0,0.300946099727719,4.5481500811197,0,0.664225598535437,0.921845842708516,0.695068915744663,0.391602314925481,0,0,0,0,0.606255142892519,0,0.30239029332968,0.248107807818777,0,1.12264037773229,0.384417447767103,0,0,0,3.08419387605311,0.532685175939381,0.821271560138091,1.03850885836724,4.18357362455853,0.120859449591622,21.4541923224515,0.184161977871793,1.03333003348146,1.0925470080403,1.18011973463482,1.35359883872224,1.92538342761037,0.784349769176855,0,0.844413031143006,1.13733384070897,0.510281115829547,0.647747748306418,0,1.35473218771926,3.01013864312912,0.509752546090077,0.831076008928724,1.11937377361089,0,0,0.769350375349168,0.656029291399411,0.650756789328606,0,0.0915694648183434,0,0,1.30012049207304,0,0.580024309752732,1.69453478826109,1.5350367472613,0.551346289938122,0.966782203814463,1.59518363305651,0.596586391912706,0.356128142586949,0.661139661443912,0.384380134730212,0.127612712494584,0.10115778085555,2.32422774648643,0.94443704049192,0.6970372701606,0,0.532306030317022,0.869932992075073,0.55597265731176,2.57624796135584,0,0.316379424718726,1.33441135746677,0.255897791311334,0,0.95460974377781,3.92474320099615,0.359744915166629,1.64722217841633,0.942499218765491,0.606547444719948,3.17020642346017,0.421258456238981,0,0.243713489631284,3.16950440270266,0.545999645631943,2.12108147930569,0,0,0,1.75380354101505,0,0.655894752046633,0.608731130888112,1.8589409885985,1.12678241012897,0.143411352204052,0.0982490410131212,0.7133421029625,2.48332744849418,0.633322905892992,0.987884678879706,0.379473173765715,0.699869440489966,0.0962221127255121,0,2.17781969722645,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0.422008249231538,0.111308705022906,0.659215496907038,0,0,0.276283915531148,0,0,0,0.622079175323615,0,0.179021174675609,0,0,0,0,1.93866549219044,0.649376687132959,0,0,0,0,0,0,0,1.37897349296586,0,0.868124974666461,0,0.241192877250816,1.52581736317083,0.331737779793674,0.591095237907095,0,0,0,0,0.227884111694002,0,0.179515288819544,0,0.31900115973192,0.732780747214898,0,0,0,0,0,0,0,0,0,3.58696709697646,0,0.141353071433941,0,0,0,0,0.296521128680622,0.741383633679017,0.626531697032732,0,0,0.937057782901357,2.18945747058799,0,0.971121518136371,0,1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| 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| ||
|short_description=p@chr16:90001394..90001405,+ | |short_description=p@chr16:90001394..90001405,+ | ||
}} | }} |
Latest revision as of 13:34, 25 July 2015
Short description: | p@chr16:90001394..90001405, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:90001394..90001405, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.04e-14 | 8 |
neuron | 9.83e-12 | 6 |
neuroblast | 9.83e-12 | 6 |
electrically signaling cell | 9.83e-12 | 6 |
electrically responsive cell | 7.89e-10 | 61 |
electrically active cell | 7.89e-10 | 61 |
mesenchymal stem cell of the bone marrow | 2.84e-07 | 6 |
neural cell | 3.28e-07 | 25 |
embryonic cell | 5.41e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.79e-08 | 78 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.53e-07 | 3 |
leiomyoma | 2.53e-07 | 3 |