FFCP PHASE1:Hg19::chr17:39755734..39755747,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:39755734..39755747,- | |||
|coexpression_cluster_id=C373 | |||
|description=CAGE_peak_at_chr17:39755734..39755747,- | |description=CAGE_peak_at_chr17:39755734..39755747,- | ||
|id=chr17:39755734..39755747,- | |id=chr17:39755734..39755747,- | ||
|ontology_enrichment_celltype=CL:1000415!1.09e-11!2;CL:0000047!9.40e-11!8;CL:0000076!3.75e-08!62;CL:1001319!9.15e-07!1;CL:1000600!9.15e-07!1 | |ontology_enrichment_celltype=CL:1000415!1.09e-11!2;CL:0000047!9.40e-11!8;CL:0000076!3.75e-08!62;CL:1001319!9.15e-07!1;CL:1000600!9.15e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:1001319;2.38e-15;1!CL:1000600;2.38e-15;1!CL:0002535;1.20e-08;2!CL:0000047;2.48e-08;2!CL:1000415;2.48e-08;2!CL:0002251;5.28e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,2.06e-15,1;CL:1000600,2.06e-15,1;CL:0000076,1.21e-10,63;CL:0002535,1.20e-08,2;CL:1000415,2.87e-08,2;CL:0000047,6.18e-08,8;CL:0002251,5.56e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0005754;2.38e-15;1!UBERON:0008814;1.73e-08;2!UBERON:0010056;1.73e-08;2!UBERON:0007297;2.48e-08;2 | |||
|ontology_enrichment_disease=DOID:1749!3.39e-36!14;DOID:305!4.66e-17!106;DOID:0050687!3.76e-14!143;DOID:4362!3.12e-10!5;DOID:162!2.47e-08!235;DOID:14566!4.74e-08!239 | |ontology_enrichment_disease=DOID:1749!3.39e-36!14;DOID:305!4.66e-17!106;DOID:0050687!3.76e-14!143;DOID:4362!3.12e-10!5;DOID:162!2.47e-08!235;DOID:14566!4.74e-08!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.96e-49;14!DOID:4362;1.19e-12;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.43e-49,14;DOID:4362,1.19e-12,5;DOID:305,2.17e-12,106;DOID:0050687,6.66e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0002294!4.57e-26!7;UBERON:0001173!4.57e-26!7;UBERON:0004912!4.57e-26!7;UBERON:0003343!1.67e-21!4;UBERON:0004785!1.67e-21!4;UBERON:0002394!1.41e-20!4;UBERON:0003928!1.41e-20!4;UBERON:0003729!3.07e-17!5;UBERON:0000344!6.22e-11!12;UBERON:0009497!2.81e-09!25;UBERON:0000015!2.81e-09!25;UBERON:0002423!2.81e-09!25;UBERON:0006235!2.81e-09!25;UBERON:0004161!2.81e-09!25;UBERON:0000058!9.63e-09!26;UBERON:0000974!1.14e-08!10;UBERON:0000002!1.34e-08!6;UBERON:0001560!1.34e-08!6;UBERON:0002110!4.54e-08!3;UBERON:0006242!4.54e-08!3;UBERON:0006947!5.04e-08!3;UBERON:0004054!5.04e-08!3;UBERON:0003978!9.08e-08!3;UBERON:0009751!9.08e-08!3;UBERON:0000946!9.08e-08!3;UBERON:0002523!9.08e-08!3;UBERON:0005983!9.08e-08!3;UBERON:0002165!9.08e-08!3;UBERON:0002062!9.08e-08!3;UBERON:0007280!9.08e-08!3;UBERON:0004175!5.06e-07!25;UBERON:0000997!7.35e-07!1;UBERON:0005056!7.35e-07!1;UBERON:0000998!8.21e-07!1;UBERON:0006868!8.21e-07!1;UBERON:0004645!9.15e-07!1;UBERON:0001256!9.15e-07!1;UBERON:0001259!9.15e-07!1 | |ontology_enrichment_uberon=UBERON:0002294!4.57e-26!7;UBERON:0001173!4.57e-26!7;UBERON:0004912!4.57e-26!7;UBERON:0003343!1.67e-21!4;UBERON:0004785!1.67e-21!4;UBERON:0002394!1.41e-20!4;UBERON:0003928!1.41e-20!4;UBERON:0003729!3.07e-17!5;UBERON:0000344!6.22e-11!12;UBERON:0009497!2.81e-09!25;UBERON:0000015!2.81e-09!25;UBERON:0002423!2.81e-09!25;UBERON:0006235!2.81e-09!25;UBERON:0004161!2.81e-09!25;UBERON:0000058!9.63e-09!26;UBERON:0000974!1.14e-08!10;UBERON:0000002!1.34e-08!6;UBERON:0001560!1.34e-08!6;UBERON:0002110!4.54e-08!3;UBERON:0006242!4.54e-08!3;UBERON:0006947!5.04e-08!3;UBERON:0004054!5.04e-08!3;UBERON:0003978!9.08e-08!3;UBERON:0009751!9.08e-08!3;UBERON:0000946!9.08e-08!3;UBERON:0002523!9.08e-08!3;UBERON:0005983!9.08e-08!3;UBERON:0002165!9.08e-08!3;UBERON:0002062!9.08e-08!3;UBERON:0007280!9.08e-08!3;UBERON:0004175!5.06e-07!25;UBERON:0000997!7.35e-07!1;UBERON:0005056!7.35e-07!1;UBERON:0000998!8.21e-07!1;UBERON:0006868!8.21e-07!1;UBERON:0004645!9.15e-07!1;UBERON:0001256!9.15e-07!1;UBERON:0001259!9.15e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0003343;1.39e-32;4!UBERON:0004785;1.39e-32;4!UBERON:0000974;5.60e-22;6!UBERON:0000997;1.15e-15;1!UBERON:0005056;1.15e-15;1!UBERON:0004176;1.15e-15;1!UBERON:0000998;2.38e-15;1!UBERON:0004645;2.38e-15;1!UBERON:0006868;2.38e-15;1!UBERON:0001256;2.38e-15;1!UBERON:0001259;2.38e-15;1!UBERON:0000344;1.18e-11;20!UBERON:0000002;1.07e-10;6!UBERON:0001560;1.07e-10;6!UBERON:0003729;1.73e-10;13!UBERON:0006955;1.20e-08;2!UBERON:0004801;1.20e-08;2!UBERON:0001255;2.48e-08;2!UBERON:0001556;2.48e-08;2!UBERON:0000161;2.40e-07;19!UBERON:0000166;2.40e-07;19!UBERON:0004175;9.49e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,1.82e-32,4;UBERON:0004785,1.82e-32,4;UBERON:0000997,1.16e-15,1;UBERON:0005056,1.16e-15,1;UBERON:0000998,1.54e-15,1;UBERON:0006868,1.54e-15,1;UBERON:0004645,2.06e-15,1;UBERON:0001256,2.06e-15,1;UBERON:0001259,2.06e-15,1;UBERON:0000974,2.07e-13,10;UBERON:0000344,1.23e-11,20;UBERON:0000002,1.07e-10,6;UBERON:0001560,1.07e-10,6;UBERON:0003729,1.87e-10,13;UBERON:0006955,1.20e-08,2;UBERON:0004801,1.20e-08,2;UBERON:0001255,2.31e-08,2;UBERON:0001556,2.31e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857867961948885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0.773288812777695,0,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0.718946809178615,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,7.52888219104458,0,0.113942055847001,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,2.6457947301882,9.75063113700509,0,0,0,0,0,0,0,0,0,0,0,0.977756913674015,1.12222348352147,0,0,0,0,0,0,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0.279282401272254,0.458320848023367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1110671705139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,1.06172751012966,3.4851433719119,2.65709032145778,0,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,1.69354820076372,0,0,0,0,0,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74963271071881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38385556638657,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857867961948885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0.773288812777695,0,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0.718946809178615,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,7.52888219104458,0,0.113942055847001,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,2.6457947301882,9.75063113700509,0,0,0,0,0,0,0,0,0,0,0,0.977756913674015,1.12222348352147,0,0,0,0,0,0,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0.279282401272254,0.458320848023367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1110671705139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,1.06172751012966,3.4851433719119,2.65709032145778,0,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,1.69354820076372,0,0,0,0,0,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74963271071881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38385556638657,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:39755734..39755747,- | |short_description=p@chr17:39755734..39755747,- | ||
}} | }} |
Latest revision as of 16:45, 25 July 2015
Short description: | p@chr17:39755734..39755747, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39755734..39755747, - |
Coexpression cluster: | C373_epidermoid_Prostate_cord_squamous_testicular_pharyngeal_testis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 2.06e-15 | 1 |
lower urinary tract cell | 2.06e-15 | 1 |
squamous epithelial cell | 1.21e-10 | 63 |
epithelial cell of cervix | 1.20e-08 | 2 |
epithelial cell of gall bladder | 2.87e-08 | 2 |
neuronal stem cell | 6.18e-08 | 8 |
epithelial cell of alimentary canal | 5.56e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 1.82e-32 | 4 |
respiratory system mucosa | 1.82e-32 | 4 |
mammalian vulva | 1.16e-15 | 1 |
external female genitalia | 1.16e-15 | 1 |
seminal vesicle | 1.54e-15 | 1 |
seminal fluid secreting gland | 1.54e-15 | 1 |
urinary bladder urothelium | 2.06e-15 | 1 |
wall of urinary bladder | 2.06e-15 | 1 |
mucosa of urinary bladder | 2.06e-15 | 1 |
neck | 2.07e-13 | 10 |
mucosa | 1.23e-11 | 20 |
uterine cervix | 1.07e-10 | 6 |
neck of organ | 1.07e-10 | 6 |
mouth mucosa | 1.87e-10 | 13 |
uterine epithelium | 1.20e-08 | 2 |
cervix epithelium | 1.20e-08 | 2 |
urinary bladder | 2.31e-08 | 2 |
lower urinary tract | 2.31e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.43e-49 | 14 |
cervical cancer | 1.19e-12 | 5 |
carcinoma | 2.17e-12 | 106 |
cell type cancer | 6.66e-09 | 143 |