FFCP PHASE1:Hg19::chr17:39780497..39780517,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:39780497..39780517,+ | |||
|coexpression_cluster_id=C544 | |||
|description=CAGE_peak_at_chr17:39780497..39780517,+ | |description=CAGE_peak_at_chr17:39780497..39780517,+ | ||
|id=chr17:39780497..39780517,+ | |id=chr17:39780497..39780517,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.31e-33!43;CL:0000066!6.60e-33!254;CL:0000223!2.76e-22!59;CL:0002368!1.01e-21!13;CL:0002159!9.01e-17!13;CL:0002251!1.26e-15!21;CL:0002202!3.84e-13!9;CL:0002632!3.84e-13!9;CL:0000622!7.66e-12!5;CL:0000244!5.92e-10!4;CL:0000731!5.92e-10!4;CL:0000154!8.57e-10!6;CL:0002328!8.25e-09!3;CL:0000068!1.61e-08!3;CL:0000069!1.61e-08!3;CL:0000307!1.61e-08!3;CL:0000377!1.61e-08!3;CL:0000063!3.83e-08!578;CL:0002621!6.27e-08!3;CL:0002077!6.66e-08!33;CL:0002623!8.68e-08!3;CL:0002166!1.51e-07!3;CL:0000362!1.51e-07!8;CL:0000240!5.53e-07!6;CL:0000311!5.53e-07!6;CL:0000079!5.53e-07!6;CL:0000237!5.53e-07!6;CL:0000036!5.53e-07!6;CL:0000357!5.53e-07!6;CL:0000114!5.53e-07!6 | |ontology_enrichment_celltype=CL:0002076!1.31e-33!43;CL:0000066!6.60e-33!254;CL:0000223!2.76e-22!59;CL:0002368!1.01e-21!13;CL:0002159!9.01e-17!13;CL:0002251!1.26e-15!21;CL:0002202!3.84e-13!9;CL:0002632!3.84e-13!9;CL:0000622!7.66e-12!5;CL:0000244!5.92e-10!4;CL:0000731!5.92e-10!4;CL:0000154!8.57e-10!6;CL:0002328!8.25e-09!3;CL:0000068!1.61e-08!3;CL:0000069!1.61e-08!3;CL:0000307!1.61e-08!3;CL:0000377!1.61e-08!3;CL:0000063!3.83e-08!578;CL:0002621!6.27e-08!3;CL:0002077!6.66e-08!33;CL:0002623!8.68e-08!3;CL:0002166!1.51e-07!3;CL:0000362!1.51e-07!8;CL:0000240!5.53e-07!6;CL:0000311!5.53e-07!6;CL:0000079!5.53e-07!6;CL:0000237!5.53e-07!6;CL:0000036!5.53e-07!6;CL:0000357!5.53e-07!6;CL:0000114!5.53e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002368;2.43e-38;13!CL:0002076;4.08e-27;42!CL:0002202;7.78e-21;9!CL:0002632;7.78e-21;9!CL:0002328;6.62e-17;3!CL:0002159;1.14e-16;14!CL:0000307;2.03e-16;3!CL:0000240;9.35e-14;6!CL:0000311;9.35e-14;6!CL:0000079;9.35e-14;6!CL:0000237;9.35e-14;6!CL:0000244;8.66e-12;4!CL:0000731;8.66e-12;4!CL:0002327;1.00e-11;4!CL:0000575;5.26e-11;2!CL:0000312;9.82e-10;5!CL:0000622;1.70e-09;5!CL:0002077;2.26e-09;34!CL:0000362;3.32e-09;9!CL:0002251;1.83e-08;20!CL:0000154;5.48e-08;6!CL:0002231;7.28e-08;3!CL:0002621;1.71e-07;3!CL:0002623;1.71e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,2.49e-38,13;CL:0002076,1.61e-35,42;CL:0000223,1.38e-24,58;CL:0000066,6.73e-22,253;CL:0002202,9.72e-21,9;CL:0002632,9.72e-21,9;CL:0002328,6.81e-17,3;CL:0002159,1.17e-16,14;CL:0000068,2.78e-16,3;CL:0000069,2.78e-16,3;CL:0000307,2.78e-16,3;CL:0000377,2.78e-16,3;CL:0000240,9.06e-14,6;CL:0000311,9.06e-14,6;CL:0000079,9.06e-14,6;CL:0000237,9.06e-14,6;CL:0000036,9.06e-14,6;CL:0000357,9.06e-14,6;CL:0000114,9.06e-14,6;CL:0002327,9.51e-12,4;CL:0000244,9.87e-12,4;CL:0000731,9.87e-12,4;CL:0000575,7.13e-11,2;CL:0002077,1.90e-10,34;CL:0000312,9.97e-10,5;CL:0000622,1.92e-09,5;CL:0000362,3.39e-09,9;CL:0002321,7.82e-09,250;CL:0002251,1.75e-08,20;CL:0000154,6.04e-08,6;CL:0002231,7.04e-08,3;CL:0002621,1.58e-07,3;CL:0002623,1.93e-07,3;CL:0002252,9.81e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;2.03e-16;3!CL:0000223;3.90e-14;58!CL:0000357;9.35e-14;6!CL:0000114;9.35e-14;6 | |||
|ontology_enrichment_disease=DOID:1749!2.74e-11!14;DOID:305!1.75e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!8.68e-28!72;UBERON:0004119!9.35e-23!169;UBERON:0000925!9.35e-23!169;UBERON:0006595!9.35e-23!169;UBERON:0000065!1.87e-22!53;UBERON:0000072!4.47e-18!46;UBERON:0008947!3.38e-15!38;UBERON:0003258!3.38e-15!38;UBERON:0001737!1.20e-14!9;UBERON:0001007!4.24e-14!155;UBERON:0001555!4.24e-14!155;UBERON:0007026!4.24e-14!155;UBERON:0001557!7.87e-14!19;UBERON:0000077!8.72e-13!130;UBERON:0007196!1.80e-12!14;UBERON:0001558!1.80e-12!14;UBERON:0000365!9.84e-12!5;UBERON:0005631!1.76e-11!14;UBERON:0000158!1.76e-11!14;UBERON:0001041!1.76e-11!98;UBERON:0000166!1.07e-10!21;UBERON:0004921!4.87e-10!129;UBERON:0004185!4.87e-10!129;UBERON:0005910!1.05e-09!6;UBERON:0000064!1.33e-09!219;UBERON:0000161!1.76e-09!35;UBERON:0000165!4.82e-09!28;UBERON:0000930!4.82e-09!28;UBERON:0004815!8.25e-09!3;UBERON:0002031!8.25e-09!3;UBERON:0003126!2.79e-08!7;UBERON:0001005!2.79e-08!7;UBERON:0001949!6.27e-08!3;UBERON:0000305!6.76e-08!7;UBERON:0005178!1.83e-07!34;UBERON:0002224!1.83e-07!34;UBERON:0003729!2.29e-07!5;UBERON:0000063!3.00e-07!97;UBERON:0005181!3.57e-07!35;UBERON:0000062!5.13e-07!511;UBERON:0003102!5.18e-07!95;UBERON:0001723!6.21e-07!3;UBERON:0001033!6.21e-07!3;UBERON:0010056!6.21e-07!3;UBERON:0004871!7.39e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;6.62e-17;3!UBERON:0002031;6.62e-17;3!UBERON:0007196;2.97e-12;15!UBERON:0001558;2.97e-12;15!UBERON:0001911;1.00e-11;4!UBERON:0000065;6.16e-11;44!UBERON:0002185;2.49e-10;5!UBERON:0000486;3.87e-10;12!UBERON:0000365;1.58e-09;5!UBERON:0005911;2.54e-09;36!UBERON:0005178;2.82e-08;34!UBERON:0002224;2.82e-08;34!UBERON:0005910;5.15e-08;6!UBERON:0005181;5.49e-08;35!UBERON:0004807;6.50e-08;22!UBERON:0001004;1.47e-07;65!UBERON:0001949;1.71e-07;3!UBERON:0000485;1.72e-07;7!UBERON:0003126;2.73e-07;7!UBERON:0001005;2.73e-07;7!UBERON:0000072;3.24e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,6.81e-17,3;UBERON:0002031,6.81e-17,3;UBERON:0001004,5.19e-14,74;UBERON:0004119,7.56e-13,160;UBERON:0000925,7.56e-13,160;UBERON:0006595,7.56e-13,160;UBERON:0007196,3.38e-12,15;UBERON:0001558,3.38e-12,15;UBERON:0001911,9.51e-12,4;UBERON:0005333,9.51e-12,4;UBERON:0008425,9.51e-12,4;UBERON:0005311,9.51e-12,4;UBERON:0000065,2.87e-11,54;UBERON:0005157,5.44e-11,47;UBERON:0002185,2.53e-10,5;UBERON:0005153,9.83e-10,37;UBERON:0000365,1.75e-09,5;UBERON:0005178,1.11e-08,34;UBERON:0002224,1.11e-08,34;UBERON:0005181,2.13e-08,35;UBERON:0003102,3.90e-08,99;UBERON:0005910,5.62e-08,6;UBERON:0001949,1.58e-07,3;UBERON:0008947,1.69e-07,38;UBERON:0003258,1.69e-07,38;UBERON:0003126,3.10e-07,7;UBERON:0001005,3.10e-07,7 | |||
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| ||
|short_description=p@chr17:39780497..39780517,+ | |short_description=p@chr17:39780497..39780517,+ | ||
}} | }} |
Latest revision as of 16:47, 25 July 2015
Short description: | p@chr17:39780497..39780517, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39780497..39780517, + |
Coexpression cluster: | C544_nasal_Keratinocyte_Esophageal_Urothelial_Placental_Corneal_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 6.81e-17 | 3 |
epithelium of bronchus | 6.81e-17 | 3 |
respiratory system | 5.19e-14 | 74 |
endoderm-derived structure | 7.56e-13 | 160 |
endoderm | 7.56e-13 | 160 |
presumptive endoderm | 7.56e-13 | 160 |
tracheobronchial tree | 3.38e-12 | 15 |
lower respiratory tract | 3.38e-12 | 15 |
mammary gland | 9.51e-12 | 4 |
mammary bud | 9.51e-12 | 4 |
mammary ridge | 9.51e-12 | 4 |
mammary placode | 9.51e-12 | 4 |
respiratory tract | 2.87e-11 | 54 |
epithelial fold | 5.44e-11 | 47 |
bronchus | 2.53e-10 | 5 |
epithelial bud | 9.83e-10 | 37 |
urothelium | 1.75e-09 | 5 |
thoracic cavity element | 1.11e-08 | 34 |
thoracic cavity | 1.11e-08 | 34 |
thoracic segment organ | 2.13e-08 | 35 |
surface structure | 3.90e-08 | 99 |
transitional epithelium | 5.62e-08 | 6 |
gingival epithelium | 1.58e-07 | 3 |
respiratory primordium | 1.69e-07 | 38 |
endoderm of foregut | 1.69e-07 | 38 |
trachea | 3.10e-07 | 7 |
respiratory airway | 3.10e-07 | 7 |