FFCP PHASE1:Hg19::chr17:48169991..48169992,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:48169991..48169992,+ | |||
|description=CAGE_peak_at_chr17:48169991..48169992,+ | |description=CAGE_peak_at_chr17:48169991..48169992,+ | ||
|id=chr17:48169991..48169992,+ | |id=chr17:48169991..48169992,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.48e-21!254;CL:0002076!3.70e-12!43;CL:0000220!1.29e-10!246;CL:0002321!2.32e-10!248;CL:0000223!8.98e-10!59;CL:0002251!4.40e-08!21;CL:0000076!7.89e-07!62 | |ontology_enrichment_celltype=CL:0000066!6.48e-21!254;CL:0002076!3.70e-12!43;CL:0000220!1.29e-10!246;CL:0002321!2.32e-10!248;CL:0000223!8.98e-10!59;CL:0002251!4.40e-08!21;CL:0000076!7.89e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002621;2.80e-18;3!CL:0000322;8.31e-09;3!CL:0002076;1.65e-08;42!CL:0000342;3.20e-07;1!CL:0002565;3.20e-07;1!CL:0000244;5.18e-07;4!CL:0000731;5.18e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,1.76e-18,3;CL:0002076,6.82e-10,42;CL:0000322,1.24e-08,3;CL:0000066,1.39e-08,253;CL:0000244,5.36e-07,4;CL:0000731,5.36e-07,4;CL:0000342,6.20e-07,1;CL:0002565,6.20e-07,1;CL:0000223,9.07e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.29e-09!106;DOID:0050687!5.13e-08!143;DOID:1749!1.04e-07!14;DOID:193!6.62e-07!29 | |ontology_enrichment_disease=DOID:305!3.29e-09!106;DOID:0050687!5.13e-08!143;DOID:1749!1.04e-07!14;DOID:193!6.62e-07!29 | ||
|ontology_enrichment_disease_v019=DOID:3910;8.98e-13;2!DOID:3112;3.20e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,1.64e-12,2;DOID:3112,2.52e-07,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.80e-18;3!UBERON:0004903;8.98e-13;2!UBERON:0002173;8.98e-13;2!UBERON:0002186;8.98e-13;2!UBERON:0000486;2.84e-12;12!UBERON:0004807;4.11e-09;22!UBERON:0004821;8.31e-09;3!UBERON:0007499;8.31e-09;3!UBERON:0003215;8.31e-09;3!UBERON:0010368;8.31e-09;3!UBERON:0009911;8.31e-09;3!UBERON:0002299;8.31e-09;3!UBERON:0006524;8.31e-09;3!UBERON:0008874;8.31e-09;3!UBERON:0002169;8.31e-09;3!UBERON:0004894;8.31e-09;3!UBERON:0005911;3.37e-08;36!UBERON:0003929;4.01e-08;7!UBERON:0002506;3.20e-07;1!UBERON:0001769;3.20e-07;1!UBERON:0003350;3.67e-07;8!UBERON:0001828;3.67e-07;8!UBERON:0009856;8.31e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.76e-18,3;UBERON:0004903,1.64e-12,2;UBERON:0002173,1.64e-12,2;UBERON:0002186,1.64e-12,2;UBERON:0004821,1.24e-08,3;UBERON:0003215,1.24e-08,3;UBERON:0010368,1.24e-08,3;UBERON:0009911,1.24e-08,3;UBERON:0002299,1.24e-08,3;UBERON:0006524,1.24e-08,3;UBERON:0008874,1.24e-08,3;UBERON:0002169,1.24e-08,3;UBERON:0004894,1.24e-08,3;UBERON:0003350,3.10e-07,8;UBERON:0001828,3.10e-07,8;UBERON:0004807,4.99e-07,28;UBERON:0002506,6.20e-07,1;UBERON:0001769,6.20e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.821246550437305,0.125542639594803,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.397227542439656,0.286836620748814,0,0,0,0.74000264525148,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0.567160915800105,0,0,0.211931901159562,0,0,0,0,0.337552664482532,0.0974370051611986,0.252433774244115,0,0,0,0.10075209822764,0,1.93260853163297,1.36373060295417,1.14721838155602,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0.98775256867763,1.1240175325762,0.301586917234893,0.555530670951178,0.325808305310325,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,1.51183915378974,0.567100388969546,0.895585227028483,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,1.04007436911366,0,0,0.532844358032199,0.142977993658148,0,0,0.325736184293735,0,0,3.01439377059586,1.74306691720059,1.99945982364114,0,0,0,0.958499421966331,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0,0,2.60279707715243,0,0,0.637938751653163,0,0,0,0,0,0,1.24782516918484,0.535286966391485,0.630809660135739,0.585707074963566,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,0.276242966807689,0,0,0,0,1.69433741629712,0.784349769176855,1.46139224653261,0.949964660035881,0,0.170093705276516,0.215915916102139,0,0,1.50506932156456,0,0,0.895499018888713,0,0,0.512900250232778,1.31205858279882,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0.165284915360978,0.768760269460425,0.638063562472921,0.2023155617111,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0,0.511795582622668,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,1.07001315444375,0,0,0,0,0,1.25088746543166,0,0,0,2.15252686335615,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,0.222617410045812,0,0,0.19924798825107,0,0.251932747854276,0.715880777515084,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.455173793141999,1.01701460117107,0,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0.113942055847001,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.138674673013139,0.347119476670262,0.0979923974143777,0.609414446062818,0,0,0,0,0.0821154570532092,0,0,0,0.959293472527256,0,0,0.195551382734803,0.160317640503067,0,0.799238438328521,0.144090417154106,0,0,0.576219191952599,0,0,0.135904206073614,0.523014231561666,0.101998217636322,0,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0.575745591958336,0,0,0,0,1.72844298240254,0.326587360109409,0,0,0.170388021785422,0.339936274560377,0,0,0,0,0.342173675768659,0,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0.999843263696853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0,0,0,0.265841714557995,2.08698024724694,0.450772826991655,3.80805212168795,0.406870733204662,0,1.07410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0.385239660814607,0.857766365499703,0,0,0.463044948647668,0.244736704506468,0.71635536432595,0,0,0.176689145945881,1.3503982678964,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0.737318726261158,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.11796972334774,0.183428598521679,0.462102664601353,0,0,0,0,1.0085253435176,0,0,1.47394725759087,0.591424344868181,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0.171488009437418,0.135939465953663,0,0.236387681767936,0.333694205676207,0,0,0,0,0,0,0,0,0,0,0,1.65772931330429,0.3414369541879,0,0,0,0.0852134047591577,0,1.60374807980835,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0.240724100067505,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00918676322552,0,0,0,0,0,0.0717222053926763,0,0.244209805832924,0.533636729388577,0,0.449126010532934,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.821246550437305,0.125542639594803,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.397227542439656,0.286836620748814,0,0,0,0.74000264525148,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0.567160915800105,0,0,0.211931901159562,0,0,0,0,0.337552664482532,0.0974370051611986,0.252433774244115,0,0,0,0.10075209822764,0,1.93260853163297,1.36373060295417,1.14721838155602,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0.98775256867763,1.1240175325762,0.301586917234893,0.555530670951178,0.325808305310325,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,1.51183915378974,0.567100388969546,0.895585227028483,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,1.04007436911366,0,0,0.532844358032199,0.142977993658148,0,0,0.325736184293735,0,0,3.01439377059586,1.74306691720059,1.99945982364114,0,0,0,0.958499421966331,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0,0,2.60279707715243,0,0,0.637938751653163,0,0,0,0,0,0,1.24782516918484,0.535286966391485,0.630809660135739,0.585707074963566,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,0.276242966807689,0,0,0,0,1.69433741629712,0.784349769176855,1.46139224653261,0.949964660035881,0,0.170093705276516,0.215915916102139,0,0,1.50506932156456,0,0,0.895499018888713,0,0,0.512900250232778,1.31205858279882,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0.165284915360978,0.768760269460425,0.638063562472921,0.2023155617111,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0,0.511795582622668,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,1.07001315444375,0,0,0,0,0,1.25088746543166,0,0,0,2.15252686335615,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,0.222617410045812,0,0,0.19924798825107,0,0.251932747854276,0.715880777515084,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.455173793141999,1.01701460117107,0,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0.113942055847001,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.138674673013139,0.347119476670262,0.0979923974143777,0.609414446062818,0,0,0,0,0.0821154570532092,0,0,0,0.959293472527256,0,0,0.195551382734803,0.160317640503067,0,0.799238438328521,0.144090417154106,0,0,0.576219191952599,0,0,0.135904206073614,0.523014231561666,0.101998217636322,0,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0.575745591958336,0,0,0,0,1.72844298240254,0.326587360109409,0,0,0.170388021785422,0.339936274560377,0,0,0,0,0.342173675768659,0,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0.999843263696853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0,0,0,0.265841714557995,2.08698024724694,0.450772826991655,3.80805212168795,0.406870733204662,0,1.07410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0.385239660814607,0.857766365499703,0,0,0.463044948647668,0.244736704506468,0.71635536432595,0,0,0.176689145945881,1.3503982678964,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0.737318726261158,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.11796972334774,0.183428598521679,0.462102664601353,0,0,0,0,1.0085253435176,0,0,1.47394725759087,0.591424344868181,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0.171488009437418,0.135939465953663,0,0.236387681767936,0.333694205676207,0,0,0,0,0,0,0,0,0,0,0,1.65772931330429,0.3414369541879,0,0,0,0.0852134047591577,0,1.60374807980835,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0.240724100067505,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00918676322552,0,0,0,0,0,0.0717222053926763,0,0.244209805832924,0.533636729388577,0,0.449126010532934,0,0,0,0,0,0 | ||
|short_description=p@chr17:48169991..48169992,+ | |short_description=p@chr17:48169991..48169992,+ | ||
}} | }} |
Latest revision as of 18:27, 25 July 2015
Short description: | p@chr17:48169991..48169992, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:48169991..48169992, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 1.76e-18 | 3 |
endo-epithelial cell | 6.82e-10 | 42 |
pneumocyte | 1.24e-08 | 3 |
epithelial cell | 1.39e-08 | 253 |
transitional epithelial cell | 5.36e-07 | 4 |
urothelial cell | 5.36e-07 | 4 |
pigment cell (sensu Vertebrata) | 6.20e-07 | 1 |
iris pigment epithelial cell | 6.20e-07 | 1 |
endodermal cell | 9.07e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.76e-18 | 3 |
bronchoalveolar duct junction | 1.64e-12 | 2 |
alveolar duct | 1.64e-12 | 2 |
bronchiole | 1.64e-12 | 2 |
pulmonary alveolus epithelium | 1.24e-08 | 3 |
alveolus | 1.24e-08 | 3 |
pulmonary lobule | 1.24e-08 | 3 |
lobule | 1.24e-08 | 3 |
alveolus of lung | 1.24e-08 | 3 |
alveolar system | 1.24e-08 | 3 |
pulmonary acinus | 1.24e-08 | 3 |
alveolar sac | 1.24e-08 | 3 |
alveolar wall | 1.24e-08 | 3 |
epithelium of mucosa | 3.10e-07 | 8 |
gingiva | 3.10e-07 | 8 |
respiratory system epithelium | 4.99e-07 | 28 |
iris epithelium | 6.20e-07 | 1 |
iris | 6.20e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.64e-12 | 2 |
papillary adenocarcinoma | 2.52e-07 | 1 |