FFCP PHASE1:Hg19::chr19:3483575..3483613,-: Difference between revisions
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|id=chr19:3483575..3483613,-
|short_description=p@chr19:3483575..3483613,-
|description=CAGE_peak_at_chr19:3483575..3483613,-
|association_with_transcript=NA
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:3483575..3483613,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_at_chr19:3483575..3483613,- | |||
|id=chr19:3483575..3483613,- | |||
|ontology_enrichment_celltype=CL:1000415!1.51e-09!2;CL:0000066!2.62e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000244;2.26e-08;4!CL:0000731;2.26e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,2.11e-08,4;CL:0000731,2.11e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3493!4.46e-10!2;DOID:3119!1.27e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3493;2.05e-15;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.37e-15,2 | |||
|ontology_enrichment_uberon=UBERON:0006554!1.05e-15!44;UBERON:0001008!2.77e-15!45;UBERON:0002294!1.56e-14!7;UBERON:0001173!1.56e-14!7;UBERON:0004912!1.56e-14!7;UBERON:0006947!1.21e-13!3;UBERON:0004054!1.21e-13!3;UBERON:0002110!2.83e-13!3;UBERON:0006242!2.83e-13!3;UBERON:0000058!1.55e-11!26;UBERON:0005904!2.39e-10!4;UBERON:0003064!1.62e-09!37;UBERON:0000489!4.43e-09!32;UBERON:0002113!7.91e-09!27;UBERON:0003918!7.91e-09!27;UBERON:0005095!7.91e-09!27;UBERON:0007687!7.91e-09!27;UBERON:0000365!3.72e-08!5;UBERON:0000080!5.41e-08!18;UBERON:0002120!5.41e-08!18;UBERON:0004875!5.41e-08!18;UBERON:0005721!5.41e-08!18;UBERON:0005754!5.41e-08!18;UBERON:0007297!5.41e-08!18;UBERON:0004119!7.48e-08!169;UBERON:0000925!7.48e-08!169;UBERON:0006595!7.48e-08!169;UBERON:0001046!1.54e-07!19;UBERON:0004876!3.96e-07!20;UBERON:0005172!4.08e-07!55;UBERON:0005173!4.08e-07!55;UBERON:0000160!6.20e-07!27;UBERON:0005910!7.30e-07!6;UBERON:0000059!8.37e-07!11;UBERON:0003887!9.28e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.86e-39;17!UBERON:0005409;5.23e-31;22!UBERON:0000059;8.34e-24;11!UBERON:0002108;1.14e-23;4!UBERON:0004921;7.85e-17;33!UBERON:0001155;1.31e-13;9!UBERON:0002114;9.90e-11;2!UBERON:0001052;2.26e-08;4!UBERON:0001555;4.59e-08;54!UBERON:0000365;6.04e-07;5!UBERON:0004907;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.86e-39,17;UBERON:0005409,1.71e-27,25;UBERON:0000059,7.14e-24,11;UBERON:0002108,1.44e-23,4;UBERON:0001155,1.15e-13,9;UBERON:0002114,1.20e-10,2;UBERON:0001052,2.26e-08,4;UBERON:0000365,5.70e-07,5;UBERON:0004907,6.04e-07,5 | |||
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| ||
|short_description=p@chr19:3483575..3483613,- | |||
}} | }} |
Latest revision as of 06:22, 26 July 2015
Short description: | p@chr19:3483575..3483613, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:3483575..3483613, - |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 2.11e-08 | 4 |
urothelial cell | 2.11e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.86e-39 | 17 |
gastrointestinal system | 1.71e-27 | 25 |
large intestine | 7.14e-24 | 11 |
small intestine | 1.44e-23 | 4 |
colon | 1.15e-13 | 9 |
duodenum | 1.20e-10 | 2 |
rectum | 2.26e-08 | 4 |
urothelium | 5.70e-07 | 5 |
lower digestive tract | 6.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.37e-15 | 2 |