FFCP PHASE1:Hg19::chr19:49130799..49130812,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:49130799..49130812,+ | |||
|coexpression_cluster_id=C235 | |coexpression_cluster_id=C235 | ||
|description=CAGE_peak_at_chr19:49130799..49130812,+ | |description=CAGE_peak_at_chr19:49130799..49130812,+ | ||
|id=chr19:49130799..49130812,+ | |id=chr19:49130799..49130812,+ | ||
|ontology_enrichment_celltype=CL:0002563;7.17e-26;4!CL:0002253;9.40e-14;2!CL:0002076;1.04e-10;42!CL:0002231;1.05e-09;3!CL:0000182;3.55e-09;12 | |ontology_enrichment_celltype=CL:0000223!5.97e-08!59;CL:0002322!7.37e-08!5 | ||
| | |ontology_enrichment_celltype_v019=CL:0002563;7.17e-26;4!CL:0002253;9.40e-14;2!CL:0002076;1.04e-10;42!CL:0002231;1.05e-09;3!CL:0000182;3.55e-09;12 | ||
|ontology_enrichment_disease=DOID:299;2.91e-16;25!DOID:3493;8.28e-14;2!DOID:4468;1.29e-13;2 | |ontology_enrichment_celltype_v019_2=CL:0002563,7.64e-26,4;CL:0000223,1.74e-15,58;CL:0002253,9.40e-14,2;CL:0002076,5.99e-10,42;CL:0002231,1.01e-09,3;CL:0000182,3.85e-09,12 | ||
|ontology_enrichment_uberon=UBERON:0001242;7.17e-26;4!UBERON:0001262;7.17e-26;4!UBERON:0004786;7.17e-26;4!UBERON:0004808;7.17e-26;4!UBERON:0001277;7.17e-26;4!UBERON:0000485;2.95e-15;7!UBERON:0003929;2.95e-15;7!UBERON:0003350;1.77e-13;8!UBERON:0001052;1.59e-07;4 | |ontology_enrichment_development_v019=CL:0000223;1.33e-10;58!UBERON:0004161;6.34e-10;11!UBERON:0009497;1.53e-08;13!UBERON:0003104;1.09e-07;31 | ||
|ontology_enrichment_disease=DOID:305!9.00e-17!106;DOID:299!2.69e-12!25;DOID:0050687!5.98e-11!143;DOID:3493!7.15e-10!2;DOID:4468!1.74e-09!2;DOID:3119!2.31e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:299;2.91e-16;25!DOID:3493;8.28e-14;2!DOID:4468;1.29e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.69e-16,25;DOID:3493,8.28e-14,2;DOID:4468,1.21e-13,2;DOID:305,1.78e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0009497!1.12e-09!25;UBERON:0000015!1.12e-09!25;UBERON:0002423!1.12e-09!25;UBERON:0006235!1.12e-09!25;UBERON:0004161!1.12e-09!25;UBERON:0001007!1.85e-09!155;UBERON:0001555!1.85e-09!155;UBERON:0007026!1.85e-09!155;UBERON:0004921!6.72e-09!129;UBERON:0004185!6.72e-09!129;UBERON:0003929!8.34e-09!54;UBERON:0000344!2.01e-08!12;UBERON:0004119!3.11e-08!169;UBERON:0000925!3.11e-08!169;UBERON:0006595!3.11e-08!169;UBERON:0003350!3.33e-08!5;UBERON:0005911!4.34e-08!82;UBERON:0000077!6.91e-08!130;UBERON:0007499!2.20e-07!25;UBERON:0009856!4.62e-07!26;UBERON:0005172!8.28e-07!55;UBERON:0005173!8.28e-07!55;UBERON:0005057!8.31e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;7.17e-26;4!UBERON:0001262;7.17e-26;4!UBERON:0004786;7.17e-26;4!UBERON:0004808;7.17e-26;4!UBERON:0001277;7.17e-26;4!UBERON:0000485;2.95e-15;7!UBERON:0003929;2.95e-15;7!UBERON:0003350;1.77e-13;8!UBERON:0001052;1.59e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,7.64e-26,4;UBERON:0001262,7.64e-26,4;UBERON:0004786,7.64e-26,4;UBERON:0004808,7.64e-26,4;UBERON:0001277,7.64e-26,4;UBERON:0003350,1.83e-13,8;UBERON:0000485,4.42e-12,9;UBERON:0003929,9.86e-12,54;UBERON:0005911,8.56e-08,82;UBERON:0001052,1.59e-07,4 | |||
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| ||
|short_description=p@chr19:49130799..49130812,+ | |short_description=p@chr19:49130799..49130812,+ | ||
}} | }} |
Latest revision as of 15:46, 27 July 2015
Short description: | p@chr19:49130799..49130812, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:49130799..49130812, + |
Coexpression cluster: | C235_Intestinal_Prostate_liver_colon_small_kidney_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.64e-26 | 4 |
endodermal cell | 1.74e-15 | 58 |
epithelial cell of large intestine | 9.40e-14 | 2 |
endo-epithelial cell | 5.99e-10 | 42 |
epithelial cell of prostate | 1.01e-09 | 3 |
hepatocyte | 3.85e-09 | 12 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 7.64e-26 | 4 |
wall of intestine | 7.64e-26 | 4 |
gastrointestinal system mucosa | 7.64e-26 | 4 |
gastrointestinal system epithelium | 7.64e-26 | 4 |
intestinal epithelium | 7.64e-26 | 4 |
epithelium of mucosa | 1.83e-13 | 8 |
simple columnar epithelium | 4.42e-12 | 9 |
gut epithelium | 9.86e-12 | 54 |
endo-epithelium | 8.56e-08 | 82 |
rectum | 1.59e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.69e-16 | 25 |
signet ring cell adenocarcinoma | 8.28e-14 | 2 |
clear cell adenocarcinoma | 1.21e-13 | 2 |
carcinoma | 1.78e-08 | 106 |