FFCP PHASE1:Hg19::chr19:748430..748446,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:748430..748446,+ | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_at_chr19:748430..748446,+ | |description=CAGE_peak_at_chr19:748430..748446,+ | ||
|id=chr19:748430..748446,+ | |id=chr19:748430..748446,+ | ||
|ontology_enrichment_celltype=CL:0002150!5.86e-13!3;CL:0000861!5.86e-13!3;CL:0000039!4.47e-10!7;CL:0000586!4.47e-10!7;CL:0002541!5.18e-07!3;CL:0002178!6.56e-07!3 | |ontology_enrichment_celltype=CL:0002150!5.86e-13!3;CL:0000861!5.86e-13!3;CL:0000039!4.47e-10!7;CL:0000586!4.47e-10!7;CL:0002541!5.18e-07!3;CL:0002178!6.56e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;8.10e-13;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,7.86e-13,3 | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.73e-10;1!UBERON:0000358;2.87e-10;1 | |||
|ontology_enrichment_disease=DOID:3493!6.88e-10!2 | |ontology_enrichment_disease=DOID:3493!6.88e-10!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!4.54e-22!35;UBERON:0000160!5.55e-18!27;UBERON:0000059!5.88e-15!11;UBERON:0001007!7.40e-11!155;UBERON:0001555!7.40e-11!155;UBERON:0007026!7.40e-11!155;UBERON:0004119!1.59e-10!169;UBERON:0000925!1.59e-10!169;UBERON:0006595!1.59e-10!169;UBERON:0004921!2.90e-10!129;UBERON:0004185!2.90e-10!129;UBERON:0004907!4.86e-09!5;UBERON:0001155!1.38e-08!9;UBERON:0000476!5.18e-07!3;UBERON:0000920!5.18e-07!3;UBERON:0002110!6.37e-07!3;UBERON:0006242!6.37e-07!3 | |ontology_enrichment_uberon=UBERON:0005409!4.54e-22!35;UBERON:0000160!5.55e-18!27;UBERON:0000059!5.88e-15!11;UBERON:0001007!7.40e-11!155;UBERON:0001555!7.40e-11!155;UBERON:0007026!7.40e-11!155;UBERON:0004119!1.59e-10!169;UBERON:0000925!1.59e-10!169;UBERON:0006595!1.59e-10!169;UBERON:0004921!2.90e-10!129;UBERON:0004185!2.90e-10!129;UBERON:0004907!4.86e-09!5;UBERON:0001155!1.38e-08!9;UBERON:0000476!5.18e-07!3;UBERON:0000920!5.18e-07!3;UBERON:0002110!6.37e-07!3;UBERON:0006242!6.37e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.14e-55;22!UBERON:0000160;9.58e-50;17!UBERON:0004921;4.68e-32;33!UBERON:0000059;8.92e-30;11!UBERON:0002108;1.20e-17;4!UBERON:0004907;3.82e-17;5!UBERON:0001155;1.05e-16;9!UBERON:0003124;8.10e-13;3!UBERON:0000920;8.10e-13;3!UBERON:0001555;8.60e-12;54!UBERON:0001154;1.73e-10;1!UBERON:0001153;1.73e-10;1!UBERON:0009854;1.73e-10;1!UBERON:0001052;3.46e-10;4!UBERON:0001007;1.93e-09;81!UBERON:0000945;4.53e-08;5!UBERON:0010039;4.53e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.58e-50,17;UBERON:0005409,8.08e-49,25;UBERON:0000059,8.93e-30,11;UBERON:0002108,1.20e-17,4;UBERON:0004907,3.82e-17,5;UBERON:0001155,1.05e-16,9;UBERON:0000920,7.86e-13,3;UBERON:0004921,7.51e-11,118;UBERON:0001154,1.73e-10,1;UBERON:0001153,1.73e-10,1;UBERON:0001045,1.73e-10,1;UBERON:0001052,3.46e-10,4;UBERON:0001007,5.79e-10,145;UBERON:0001555,5.79e-10,145;UBERON:0007026,5.79e-10,145;UBERON:0004119,8.16e-09,160;UBERON:0000925,8.16e-09,160;UBERON:0006595,8.16e-09,160 | |||
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| ||
|short_description=p@chr19:748430..748446,+ | |short_description=p@chr19:748430..748446,+ | ||
}} | }} |
Latest revision as of 18:25, 27 July 2015
Short description: | p@chr19:748430..748446, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:748430..748446, + |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 7.86e-13 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 9.58e-50 | 17 |
gastrointestinal system | 8.08e-49 | 25 |
large intestine | 8.93e-30 | 11 |
small intestine | 1.20e-17 | 4 |
lower digestive tract | 3.82e-17 | 5 |
colon | 1.05e-16 | 9 |
egg chorion | 7.86e-13 | 3 |
subdivision of digestive tract | 7.51e-11 | 118 |
vermiform appendix | 1.73e-10 | 1 |
caecum | 1.73e-10 | 1 |
midgut | 1.73e-10 | 1 |
rectum | 3.46e-10 | 4 |
digestive system | 5.79e-10 | 145 |
digestive tract | 5.79e-10 | 145 |
primitive gut | 5.79e-10 | 145 |
endoderm-derived structure | 8.16e-09 | 160 |
endoderm | 8.16e-09 | 160 |
presumptive endoderm | 8.16e-09 | 160 |