FFCP PHASE1:Hg19::chr1:12124073..12124086,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:12124073..12124086,+ | |||
|coexpression_cluster_id=C920 | |||
|description=CAGE_peak_at_chr1:12124073..12124086,+ | |description=CAGE_peak_at_chr1:12124073..12124086,+ | ||
|id=chr1:12124073..12124086,+ | |id=chr1:12124073..12124086,+ | ||
|ontology_enrichment_celltype=CL:0002322!2.32e-23!5;CL:0000039!1.20e-11!7;CL:0000586!1.20e-11!7;CL:0001014!5.48e-11!2;CL:0001016!5.48e-11!2;CL:0000838!1.76e-09!52;CL:0000945!2.02e-09!24;CL:0000826!2.02e-09!24;CL:0000453!2.82e-09!5;CL:0000542!2.92e-09!53;CL:0000051!2.92e-09!53;CL:0000080!2.04e-08!6;CL:0000540!1.40e-07!6;CL:0000031!1.40e-07!6;CL:0000404!1.40e-07!6 | |ontology_enrichment_celltype=CL:0002322!2.32e-23!5;CL:0000039!1.20e-11!7;CL:0000586!1.20e-11!7;CL:0001014!5.48e-11!2;CL:0001016!5.48e-11!2;CL:0000838!1.76e-09!52;CL:0000945!2.02e-09!24;CL:0000826!2.02e-09!24;CL:0000453!2.82e-09!5;CL:0000542!2.92e-09!53;CL:0000051!2.92e-09!53;CL:0000080!2.04e-08!6;CL:0000540!1.40e-07!6;CL:0000031!1.40e-07!6;CL:0000404!1.40e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.11e-26;7!CL:0000586;1.11e-26;7!CL:0000945;3.04e-12;24!CL:0000542;1.82e-08;53!CL:0001014;4.17e-07;2!CL:0001016;4.17e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.77e-26,7;CL:0000586,1.77e-26,7;CL:0000838,1.29e-13,52;CL:0000542,2.42e-13,53;CL:0000051,2.42e-13,53;CL:0000945,2.55e-12,24;CL:0000826,2.55e-12,24;CL:0000988,6.22e-08,177;CL:0001014,3.93e-07,2;CL:0001016,3.93e-07,2;CL:0002031,9.01e-07,120 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.65e-19;10!UBERON:0005564;8.65e-19;10!CL:0000051;1.82e-08;53 | |||
|ontology_enrichment_disease=DOID:0060058!3.42e-12!10;DOID:3095!2.09e-07!22;DOID:2994!2.09e-07!22 | |ontology_enrichment_disease=DOID:0060058!3.42e-12!10;DOID:3095!2.09e-07!22;DOID:2994!2.09e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:630;6.05e-13;1!DOID:0050177;6.05e-13;1!DOID:0060060;6.05e-13;1!DOID:0060061;6.05e-13;1!DOID:0050427;6.05e-13;1!DOID:8691;6.05e-13;1!DOID:0060058;4.95e-11;10!DOID:3095;1.11e-08;22!DOID:2994;1.11e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:630,3.33e-13,1;DOID:0050177,3.33e-13,1;DOID:0050427,3.33e-13,1;DOID:0060060,6.82e-13,1;DOID:0060061,6.82e-13,1;DOID:8691,6.82e-13,1;DOID:0060058,5.88e-11,10;DOID:3095,1.28e-08,22;DOID:2994,1.28e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.37e-10!8;UBERON:0003135!1.99e-07!11 | |ontology_enrichment_uberon=UBERON:0000473!3.37e-10!8;UBERON:0003135!1.99e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.14e-23;8!UBERON:0003135;4.12e-17;11!UBERON:0002331;1.76e-11;10!UBERON:0000922;1.96e-09;49!UBERON:0000991;4.37e-09;21!UBERON:0003101;1.11e-08;22!UBERON:0000079;1.11e-08;22!UBERON:0000178;7.98e-08;15!UBERON:0000179;7.98e-08;15!UBERON:0000463;7.98e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.22e-23,8;UBERON:0003135,5.53e-17,11;UBERON:0002331,1.80e-11,10;UBERON:0000358,1.80e-11,10;UBERON:0000307,1.80e-11,10;UBERON:0000091,1.80e-11,10;UBERON:0000087,1.80e-11,10;UBERON:0007010,1.80e-11,10;UBERON:0007806,1.80e-11,10;UBERON:0008780,1.80e-11,10;UBERON:0005728,1.80e-11,10;UBERON:0000991,5.08e-09,21;UBERON:0009196,5.08e-09,21;UBERON:0009117,5.08e-09,21;UBERON:0005564,5.08e-09,21;UBERON:0004176,1.28e-08,22;UBERON:0003101,1.28e-08,22;UBERON:0000079,1.28e-08,22;UBERON:0000178,8.08e-08,15;UBERON:0000179,8.08e-08,15;UBERON:0000463,8.08e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8272960126742,2.46301768349837,3.62069594042925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.132529768321485,0.348581828608555,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00299045849731,0,0,0,0,0,0,0,0.494411622680279,0,0,0.276283915531148,0,0,1.72318727645497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.26173241548684,6.05463300837864,5.01225357626186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677386656526276,0,0,0.321506296930038,0.137539436597234,0.415440338029185,1.5748172408605,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0.132864840313363,0,0,0,0,1.39991177098451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,1.49911733887393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327796715891087,0.126698501011437,1.22386595690378,1.06886962106224,1.8378979906969,1.0028301571695,0,0,0,0,0,0,0.193766729508018,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9234109538194 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8272960126742,2.46301768349837,3.62069594042925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.132529768321485,0.348581828608555,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00299045849731,0,0,0,0,0,0,0,0.494411622680279,0,0,0.276283915531148,0,0,1.72318727645497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.26173241548684,6.05463300837864,5.01225357626186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677386656526276,0,0,0.321506296930038,0.137539436597234,0.415440338029185,1.5748172408605,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0.132864840313363,0,0,0,0,1.39991177098451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,1.49911733887393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327796715891087,0.126698501011437,1.22386595690378,1.06886962106224,1.8378979906969,1.0028301571695,0,0,0,0,0,0,0.193766729508018,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9234109538194 | ||
|short_description=p@chr1:12124073..12124086,+ | |short_description=p@chr1:12124073..12124086,+ | ||
}} | }} |
Latest revision as of 20:22, 27 July 2015
Short description: | p@chr1:12124073..12124086, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:12124073..12124086, + |
Coexpression cluster: | C920_anaplastic_adult_hereditary_cord_hairy_immature_xeroderma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.77e-26 | 7 |
germ cell | 1.77e-26 | 7 |
lymphoid lineage restricted progenitor cell | 1.29e-13 | 52 |
lymphocyte | 2.42e-13 | 53 |
common lymphoid progenitor | 2.42e-13 | 53 |
lymphocyte of B lineage | 2.55e-12 | 24 |
pro-B cell | 2.55e-12 | 24 |
hematopoietic cell | 6.22e-08 | 177 |
CD1a-positive Langerhans cell | 3.93e-07 | 2 |
immature CD1a-positive Langerhans cell | 3.93e-07 | 2 |
hematopoietic lineage restricted progenitor cell | 9.01e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
testis | 3.22e-23 | 8 |
male reproductive organ | 5.53e-17 | 11 |
umbilical cord | 1.80e-11 | 10 |
blastocyst | 1.80e-11 | 10 |
blastula | 1.80e-11 | 10 |
bilaminar disc | 1.80e-11 | 10 |
inner cell mass | 1.80e-11 | 10 |
cleaving embryo | 1.80e-11 | 10 |
connecting stalk | 1.80e-11 | 10 |
inner cell mass derived epiblast | 1.80e-11 | 10 |
extraembryonic mesoderm | 1.80e-11 | 10 |
gonad | 5.08e-09 | 21 |
indifferent external genitalia | 5.08e-09 | 21 |
indifferent gonad | 5.08e-09 | 21 |
gonad primordium | 5.08e-09 | 21 |
external genitalia | 1.28e-08 | 22 |
male organism | 1.28e-08 | 22 |
male reproductive system | 1.28e-08 | 22 |
blood | 8.08e-08 | 15 |
haemolymphatic fluid | 8.08e-08 | 15 |
organism substance | 8.08e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 3.33e-13 | 1 |
monogenic disease | 3.33e-13 | 1 |
xeroderma pigmentosum | 3.33e-13 | 1 |
non-Hodgkin lymphoma | 6.82e-13 | 1 |
cutaneous T cell lymphoma | 6.82e-13 | 1 |
mycosis fungoides | 6.82e-13 | 1 |
lymphoma | 5.88e-11 | 10 |
germ cell and embryonal cancer | 1.28e-08 | 22 |
germ cell cancer | 1.28e-08 | 22 |