FFCP PHASE1:Hg19::chr1:4729528..4729537,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:4729528..4729537,- | |||
|description=CAGE_peak_at_chr1:4729528..4729537,- | |description=CAGE_peak_at_chr1:4729528..4729537,- | ||
|id=chr1:4729528..4729537,- | |id=chr1:4729528..4729537,- | ||
|ontology_enrichment_celltype=CL:0002621!4.58e-17!3;CL:0002097!3.75e-12!2;CL:0002149!5.58e-09!6;CL:0002255!5.58e-09!6;CL:0000174!2.20e-08!3;CL:0002166!2.74e-08!3;CL:0000066!4.31e-08!254;CL:0000594!8.94e-08!3 | |ontology_enrichment_celltype=CL:0002621!4.58e-17!3;CL:0002097!3.75e-12!2;CL:0002149!5.58e-09!6;CL:0002255!5.58e-09!6;CL:0000174!2.20e-08!3;CL:0002166!2.74e-08!3;CL:0000066!4.31e-08!254;CL:0000594!8.94e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000054;2.05e-15;2!CL:0000137;2.05e-15;2!CL:0000092;2.05e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,1.54e-15,2;CL:0000137,1.54e-15,2;CL:0000092,1.54e-15,2 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.14e-23;5!UBERON:0008814;2.05e-15;2!UBERON:0010056;2.05e-15;2 | |||
|ontology_enrichment_disease=DOID:0050687!3.31e-15!143;DOID:162!2.44e-12!235;DOID:14566!5.81e-12!239;DOID:305!9.70e-10!106;DOID:1749!1.00e-09!14;DOID:1115!2.52e-09!20;DOID:3001!5.58e-09!6;DOID:0060085!3.32e-07!1;DOID:3165!3.32e-07!1;DOID:0060121!3.32e-07!1;DOID:2438!3.32e-07!1;DOID:4418!3.32e-07!1;DOID:3151!9.79e-07!1;DOID:3149!9.79e-07!1 | |ontology_enrichment_disease=DOID:0050687!3.31e-15!143;DOID:162!2.44e-12!235;DOID:14566!5.81e-12!239;DOID:305!9.70e-10!106;DOID:1749!1.00e-09!14;DOID:1115!2.52e-09!20;DOID:3001!5.58e-09!6;DOID:0060085!3.32e-07!1;DOID:3165!3.32e-07!1;DOID:0060121!3.32e-07!1;DOID:2438!3.32e-07!1;DOID:4418!3.32e-07!1;DOID:3151!9.79e-07!1;DOID:3149!9.79e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:0060085;2.37e-29;1!DOID:3165;2.37e-29;1!DOID:0060121;2.37e-29;1!DOID:2438;2.37e-29;1!DOID:4418;2.37e-29;1!DOID:200;2.05e-15;2!DOID:4305;2.05e-15;2!DOID:1749;4.75e-09;14!DOID:0060072;2.26e-08;4!DOID:7;4.16e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,1.33e-29,1;DOID:3165,1.33e-29,1;DOID:0060121,1.33e-29,1;DOID:2438,1.33e-29,1;DOID:4418,1.33e-29,1;DOID:200,1.54e-15,2;DOID:4305,1.54e-15,2;DOID:1749,5.15e-09,14;DOID:0060072,1.96e-08,4;DOID:7,3.39e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001949!4.58e-17!3;UBERON:0002046!9.30e-11!5;UBERON:0004117!9.30e-11!5;UBERON:0007689!9.30e-11!5;UBERON:0007123!9.30e-11!5;UBERON:0003091!9.30e-11!5;UBERON:0002369!2.20e-08!3;UBERON:0001235!2.20e-08!3;UBERON:0006858!2.20e-08!3;UBERON:0000997!7.82e-07!1;UBERON:0005056!7.82e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002046;1.14e-23;5!UBERON:0001723;9.90e-11;3!UBERON:0001033;9.90e-11;3!UBERON:0000014;2.26e-08;4!UBERON:0003343;2.26e-08;4!UBERON:0004785;2.26e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002046,1.28e-23,5;UBERON:0004117,1.28e-23,5;UBERON:0007689,1.28e-23,5;UBERON:0007123,1.28e-23,5;UBERON:0003091,1.28e-23,5;UBERON:0008814,7.89e-15,18;UBERON:0009722,2.55e-11,11;UBERON:0007690,2.55e-11,11;UBERON:0001723,1.20e-10,3;UBERON:0001033,1.20e-10,3;UBERON:0010056,1.20e-10,3;UBERON:0000014,1.96e-08,4;UBERON:0003343,2.61e-08,4;UBERON:0004785,2.61e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22439575525196,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0.46112780877612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0.391969589657511,0.174118413160805,0,0,0,0,0,0,0,0,0.548167698587004,1.78843150532691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.57785949122191,0.428883182749851,0,0,0,0,0,0,0,0.176689145945881,0,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15525666150338,0,0,0,0,1.61364054962816,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.840816489941367,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6530957849648,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.16725244193374,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22439575525196,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0.46112780877612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0.391969589657511,0.174118413160805,0,0,0,0,0,0,0,0,0.548167698587004,1.78843150532691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.57785949122191,0.428883182749851,0,0,0,0,0,0,0,0.176689145945881,0,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15525666150338,0,0,0,0,1.61364054962816,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.840816489941367,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6530957849648,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.16725244193374,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:4729528..4729537,- | |short_description=p@chr1:4729528..4729537,- | ||
}} | }} |
Latest revision as of 08:50, 28 July 2015
Short description: | p@chr1:4729528..4729537, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:4729528..4729537, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 1.54e-15 | 2 |
osteocyte | 1.54e-15 | 2 |
osteoclast | 1.54e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
thyroid gland | 1.28e-23 | 5 |
pharyngeal pouch | 1.28e-23 | 5 |
thyroid diverticulum | 1.28e-23 | 5 |
pharyngeal pouch 2 | 1.28e-23 | 5 |
thyroid primordium | 1.28e-23 | 5 |
pharyngeal arch system | 7.89e-15 | 18 |
entire pharyngeal arch endoderm | 2.55e-11 | 11 |
early pharyngeal endoderm | 2.55e-11 | 11 |
tongue | 1.20e-10 | 3 |
gustatory system | 1.20e-10 | 3 |
future tongue | 1.20e-10 | 3 |
zone of skin | 1.96e-08 | 4 |
mucosa of oral region | 2.61e-08 | 4 |
respiratory system mucosa | 2.61e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 1.33e-29 | 1 |
skin benign neoplasm | 1.33e-29 | 1 |
integumentary system benign neoplasm | 1.33e-29 | 1 |
dermis tumor | 1.33e-29 | 1 |
cutaneous fibrous histiocytoma | 1.33e-29 | 1 |
giant cell tumor | 1.54e-15 | 2 |
bone giant cell tumor | 1.54e-15 | 2 |
squamous cell carcinoma | 5.15e-09 | 14 |
benign neoplasm | 1.96e-08 | 4 |
disease of anatomical entity | 3.39e-07 | 39 |