FFCP PHASE1:Hg19::chr3:128722728..128722788,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:128722728..128722788,- | |||
|description=CAGE_peak_at_chr3:128722728..128722788,- | |description=CAGE_peak_at_chr3:128722728..128722788,- | ||
|id=chr3:128722728..128722788,- | |id=chr3:128722728..128722788,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:1000415;2.32e-11;2!CL:0002178;9.55e-08;3!CL:0000167;9.29e-07;1!CL:0000164;9.29e-07;1!CL:0000502;9.29e-07;1!CL:0000172;9.29e-07;1!CL:0000173;9.29e-07;1 | |ontology_enrichment_celltype_v019=CL:1000415;2.32e-11;2!CL:0002178;9.55e-08;3!CL:0000167;9.29e-07;1!CL:0000164;9.29e-07;1!CL:0000502;9.29e-07;1!CL:0000172;9.29e-07;1!CL:0000173;9.29e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:1000415,3.00e-11,2;CL:0002178,1.13e-07,3;CL:0000066,3.90e-07,253;CL:0000167,9.30e-07,1;CL:0000164,9.30e-07,1;CL:0000502,9.30e-07,1;CL:0000172,9.30e-07,1;CL:0000173,9.30e-07,1;CL:0002351,9.30e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0001041;2.11e-07;30!CL:0002351;9.29e-07;1 | |ontology_enrichment_development_v019=UBERON:0001041;2.11e-07;30!CL:0002351;9.29e-07;1 | ||
|ontology_enrichment_disease=DOID:305!5.16e-14!106;DOID:299!1.67e-10!25;DOID:3119!3.64e-09!14;DOID:0050687!4.77e-09!143;DOID:5093!2.33e-07!4;DOID:1612!2.33e-07!4 | |ontology_enrichment_disease=DOID:305!5.16e-14!106;DOID:299!1.67e-10!25;DOID:3119!3.64e-09!14;DOID:0050687!4.77e-09!143;DOID:5093!2.33e-07!4;DOID:1612!2.33e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:5093;6.34e-21;4!DOID:1612;6.34e-21;4!DOID:299;1.08e-18;25!DOID:3493;1.99e-11;2!DOID:3119;4.50e-09;14!DOID:305;1.10e-07;106!DOID:4430;9.29e-07;1 | |ontology_enrichment_disease_v019=DOID:5093;6.34e-21;4!DOID:1612;6.34e-21;4!DOID:299;1.08e-18;25!DOID:3493;1.99e-11;2!DOID:3119;4.50e-09;14!DOID:305;1.10e-07;106!DOID:4430;9.29e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:5093,5.45e-21,4;DOID:1612,5.45e-21,4;DOID:299,1.18e-18,25;DOID:305,2.03e-18,106;DOID:0050687,8.11e-14,143;DOID:3493,2.32e-11,2;DOID:3119,4.78e-09,14;DOID:162,4.20e-08,235;DOID:14566,7.98e-08,239;DOID:7,3.89e-07,39;DOID:4430,9.30e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.36e-23!115;UBERON:0001049!1.78e-14!57;UBERON:0005068!1.78e-14!57;UBERON:0006241!1.78e-14!57;UBERON:0007135!1.78e-14!57;UBERON:0002619!4.84e-14!22;UBERON:0002020!1.03e-13!34;UBERON:0003528!1.03e-13!34;UBERON:0002616!1.11e-13!59;UBERON:0001893!1.62e-13!34;UBERON:0001869!2.10e-13!32;UBERON:0002780!7.55e-13!41;UBERON:0001890!7.55e-13!41;UBERON:0006240!7.55e-13!41;UBERON:0002791!1.07e-12!33;UBERON:0003080!2.21e-12!42;UBERON:0005911!5.75e-12!82;UBERON:0000956!7.91e-12!25;UBERON:0000203!7.91e-12!25;UBERON:0001950!9.06e-12!20;UBERON:0000955!5.39e-11!69;UBERON:0006238!5.39e-11!69;UBERON:0003929!1.96e-10!54;UBERON:0001007!4.99e-10!155;UBERON:0001555!4.99e-10!155;UBERON:0007026!4.99e-10!155;UBERON:0004119!4.43e-09!169;UBERON:0000925!4.43e-09!169;UBERON:0006595!4.43e-09!169;UBERON:0004921!6.14e-09!129;UBERON:0004185!6.14e-09!129;UBERON:0001017!1.34e-08!82;UBERON:0001871!1.50e-08!7;UBERON:0005743!1.91e-08!86;UBERON:0004907!4.42e-08!5;UBERON:0000481!4.62e-08!347;UBERON:0003075!4.74e-08!86;UBERON:0007284!4.74e-08!86;UBERON:0000349!4.97e-08!5;UBERON:0002294!7.27e-08!7;UBERON:0001173!7.27e-08!7;UBERON:0004912!7.27e-08!7;UBERON:0000077!7.94e-08!130;UBERON:0005409!1.65e-07!35;UBERON:0002346!2.49e-07!90;UBERON:0003056!3.11e-07!61;UBERON:0001046!3.26e-07!19;UBERON:0000073!7.11e-07!94;UBERON:0001016!7.11e-07!94 | |ontology_enrichment_uberon=UBERON:0007023!4.36e-23!115;UBERON:0001049!1.78e-14!57;UBERON:0005068!1.78e-14!57;UBERON:0006241!1.78e-14!57;UBERON:0007135!1.78e-14!57;UBERON:0002619!4.84e-14!22;UBERON:0002020!1.03e-13!34;UBERON:0003528!1.03e-13!34;UBERON:0002616!1.11e-13!59;UBERON:0001893!1.62e-13!34;UBERON:0001869!2.10e-13!32;UBERON:0002780!7.55e-13!41;UBERON:0001890!7.55e-13!41;UBERON:0006240!7.55e-13!41;UBERON:0002791!1.07e-12!33;UBERON:0003080!2.21e-12!42;UBERON:0005911!5.75e-12!82;UBERON:0000956!7.91e-12!25;UBERON:0000203!7.91e-12!25;UBERON:0001950!9.06e-12!20;UBERON:0000955!5.39e-11!69;UBERON:0006238!5.39e-11!69;UBERON:0003929!1.96e-10!54;UBERON:0001007!4.99e-10!155;UBERON:0001555!4.99e-10!155;UBERON:0007026!4.99e-10!155;UBERON:0004119!4.43e-09!169;UBERON:0000925!4.43e-09!169;UBERON:0006595!4.43e-09!169;UBERON:0004921!6.14e-09!129;UBERON:0004185!6.14e-09!129;UBERON:0001017!1.34e-08!82;UBERON:0001871!1.50e-08!7;UBERON:0005743!1.91e-08!86;UBERON:0004907!4.42e-08!5;UBERON:0000481!4.62e-08!347;UBERON:0003075!4.74e-08!86;UBERON:0007284!4.74e-08!86;UBERON:0000349!4.97e-08!5;UBERON:0002294!7.27e-08!7;UBERON:0001173!7.27e-08!7;UBERON:0004912!7.27e-08!7;UBERON:0000077!7.94e-08!130;UBERON:0005409!1.65e-07!35;UBERON:0002346!2.49e-07!90;UBERON:0003056!3.11e-07!61;UBERON:0001046!3.26e-07!19;UBERON:0000073!7.11e-07!94;UBERON:0001016!7.11e-07!94 | ||
|ontology_enrichment_uberon_v019=UBERON:0002294;1.66e-18;7!UBERON:0001173;1.66e-18;7!UBERON:0002110;2.70e-16;3!UBERON:0000007;1.58e-10;2!UBERON:0001954;1.58e-10;2!UBERON:0003022;1.58e-10;2!UBERON:0002421;1.58e-10;2!UBERON:0002600;1.58e-10;2!UBERON:0005409;7.04e-10;22!UBERON:0000349;2.15e-09;5!UBERON:0002423;3.21e-09;25!UBERON:0000310;1.95e-08;10!UBERON:0001443;1.13e-07;11!UBERON:0002114;1.19e-07;2!UBERON:0000160;8.68e-07;17 | |ontology_enrichment_uberon_v019=UBERON:0002294;1.66e-18;7!UBERON:0001173;1.66e-18;7!UBERON:0002110;2.70e-16;3!UBERON:0000007;1.58e-10;2!UBERON:0001954;1.58e-10;2!UBERON:0003022;1.58e-10;2!UBERON:0002421;1.58e-10;2!UBERON:0002600;1.58e-10;2!UBERON:0005409;7.04e-10;22!UBERON:0000349;2.15e-09;5!UBERON:0002423;3.21e-09;25!UBERON:0000310;1.95e-08;10!UBERON:0001443;1.13e-07;11!UBERON:0002114;1.19e-07;2!UBERON:0000160;8.68e-07;17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002110,3.78e-16,3;UBERON:0006242,3.78e-16,3;UBERON:0002294,2.94e-14,9;UBERON:0001173,2.94e-14,9;UBERON:0004912,2.94e-14,9;UBERON:0005911,1.37e-10,82;UBERON:0000007,1.51e-10,2;UBERON:0001954,1.51e-10,2;UBERON:0003022,1.51e-10,2;UBERON:0002421,1.51e-10,2;UBERON:0002600,1.51e-10,2;UBERON:0000349,2.22e-09,5;UBERON:0003929,3.47e-09,54;UBERON:0009497,3.55e-09,25;UBERON:0000015,3.55e-09,25;UBERON:0002423,3.55e-09,25;UBERON:0006235,3.55e-09,25;UBERON:0004161,3.55e-09,25;UBERON:0005409,1.31e-08,25;UBERON:0000310,1.84e-08,10;UBERON:0001007,3.29e-08,145;UBERON:0001555,3.29e-08,145;UBERON:0007026,3.29e-08,145;UBERON:0001443,1.07e-07,11;UBERON:0002114,1.34e-07,2;UBERON:0004921,2.62e-07,118;UBERON:0011216,2.78e-07,223;UBERON:0004119,4.47e-07,160;UBERON:0000925,4.47e-07,160;UBERON:0006595,4.47e-07,160;UBERON:0000160,8.63e-07,17 | |||
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| ||
|short_description=p@chr3:128722728..128722788,- | |short_description=p@chr3:128722728..128722788,- | ||
}} | }} |
Latest revision as of 15:36, 29 July 2015
Short description: | p@chr3:128722728..128722788, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:128722728..128722788, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 3.00e-11 | 2 |
epithelial cell of stomach | 1.13e-07 | 3 |
epithelial cell | 3.90e-07 | 253 |
peptide hormone secreting cell | 9.30e-07 | 1 |
enteroendocrine cell | 9.30e-07 | 1 |
type D enteroendocrine cell | 9.30e-07 | 1 |
somatostatin secreting cell | 9.30e-07 | 1 |
pancreatic D cell | 9.30e-07 | 1 |
progenitor cell of endocrine pancreas | 9.30e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
gallbladder | 3.78e-16 | 3 |
gall bladder primordium | 3.78e-16 | 3 |
biliary system | 2.94e-14 | 9 |
biliary tree | 2.94e-14 | 9 |
biliary bud | 2.94e-14 | 9 |
endo-epithelium | 1.37e-10 | 82 |
pituitary gland | 1.51e-10 | 2 |
Ammon's horn | 1.51e-10 | 2 |
lobe parts of cerebral cortex | 1.51e-10 | 2 |
hippocampal formation | 1.51e-10 | 2 |
limbic lobe | 1.51e-10 | 2 |
limbic system | 2.22e-09 | 5 |
gut epithelium | 3.47e-09 | 54 |
epithelium of foregut-midgut junction | 3.55e-09 | 25 |
anatomical boundary | 3.55e-09 | 25 |
hepatobiliary system | 3.55e-09 | 25 |
foregut-midgut junction | 3.55e-09 | 25 |
septum transversum | 3.55e-09 | 25 |
gastrointestinal system | 1.31e-08 | 25 |
breast | 1.84e-08 | 10 |
digestive system | 3.29e-08 | 145 |
digestive tract | 3.29e-08 | 145 |
primitive gut | 3.29e-08 | 145 |
chest | 1.07e-07 | 11 |
duodenum | 1.34e-07 | 2 |
subdivision of digestive tract | 2.62e-07 | 118 |
organ system subdivision | 2.78e-07 | 223 |
endoderm-derived structure | 4.47e-07 | 160 |
endoderm | 4.47e-07 | 160 |
presumptive endoderm | 4.47e-07 | 160 |
intestine | 8.63e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 5.45e-21 | 4 |
breast cancer | 5.45e-21 | 4 |
adenocarcinoma | 1.18e-18 | 25 |
carcinoma | 2.03e-18 | 106 |
cell type cancer | 8.11e-14 | 143 |
signet ring cell adenocarcinoma | 2.32e-11 | 2 |
gastrointestinal system cancer | 4.78e-09 | 14 |
cancer | 4.20e-08 | 235 |
disease of cellular proliferation | 7.98e-08 | 239 |
disease of anatomical entity | 3.89e-07 | 39 |
somatostatinoma | 9.30e-07 | 1 |