FFCP PHASE1:Hg19::chr4:3486494..3486515,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:3486494..3486515,-
|short_description=p@chr4:3486494..3486515,-
|description=CAGE_peak_at_chr4:3486494..3486515,-
|association_with_transcript=NA
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:3486494..3486515,- | |||
|description=CAGE_peak_at_chr4:3486494..3486515,- | |||
|id=chr4:3486494..3486515,- | |||
|ontology_enrichment_celltype=CL:0000066!3.86e-31!254;CL:0002076!5.66e-20!43;CL:0002251!9.10e-15!21;CL:0000223!2.55e-14!59;CL:0002178!3.16e-08!3;CL:0002368!6.53e-07!13;CL:0000082!6.67e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002178;3.15e-22;3!CL:0002251;1.24e-08;20!CL:0002327;9.77e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,2.65e-22,3;CL:0000066,5.66e-14,253;CL:0002251,1.34e-08,20;CL:0002327,1.01e-07,4;CL:0002076,2.10e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.30e-11;29 | |||
|ontology_enrichment_disease=DOID:305!1.11e-39!106;DOID:0050687!1.63e-29!143;DOID:1749!7.95e-19!14;DOID:162!5.69e-17!235;DOID:14566!2.73e-16!239;DOID:299!1.75e-10!25;DOID:0050615!9.89e-09!16;DOID:1324!2.90e-07!15;DOID:4362!6.46e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:3493;5.31e-15;2!DOID:299;6.00e-13;25!DOID:3119;1.91e-08;14!DOID:0050619;3.82e-08;1!DOID:3111;3.82e-08;1!DOID:1357;3.82e-08;1!DOID:3603;3.82e-08;1!DOID:5093;6.14e-08;4!DOID:1612;6.14e-08;4!DOID:305;3.90e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.93e-25,106;DOID:0050687,1.86e-17,143;DOID:3493,6.82e-15,2;DOID:299,5.58e-13,25;DOID:162,1.59e-12,235;DOID:14566,3.58e-12,239;DOID:3119,1.82e-08,14;DOID:0050619,2.50e-08,1;DOID:1357,2.50e-08,1;DOID:3111,3.83e-08,1;DOID:3603,3.83e-08,1;DOID:5093,4.74e-08,4;DOID:1612,4.74e-08,4 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001737;6.13e-27;9!UBERON:0001557;6.13e-27;9!UBERON:0000945;1.45e-13;5!UBERON:0010039;1.45e-13;5!UBERON:0000072;2.11e-09;37!UBERON:0001764;3.82e-08;1!UBERON:0001825;3.82e-08;1!UBERON:0001911;9.77e-08;4!UBERON:0003343;9.77e-08;4!UBERON:0004785;9.77e-08;4!UBERON:0000065;3.56e-07;44!UBERON:0001004;5.42e-07;65 | |||
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| ||
|short_description=p@chr4:3486494..3486515,- | |||
}} | }} |
Latest revision as of 04:50, 30 July 2015
Short description: | p@chr4:3486494..3486515, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:3486494..3486515, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 2.65e-22 | 3 |
epithelial cell | 5.66e-14 | 253 |
epithelial cell of alimentary canal | 1.34e-08 | 20 |
mammary gland epithelial cell | 1.01e-07 | 4 |
endo-epithelial cell | 2.10e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
larynx | 7.23e-27 | 9 |
upper respiratory tract | 7.85e-17 | 19 |
foregut | 4.45e-11 | 87 |
respiratory primordium | 1.53e-10 | 38 |
endoderm of foregut | 1.53e-10 | 38 |
segment of respiratory tract | 1.70e-10 | 47 |
respiratory system | 2.73e-09 | 74 |
digestive system | 4.54e-09 | 145 |
digestive tract | 4.54e-09 | 145 |
primitive gut | 4.54e-09 | 145 |
respiratory tract | 5.92e-09 | 54 |
subdivision of digestive tract | 8.55e-09 | 118 |
stomach | 1.10e-08 | 8 |
food storage organ | 1.10e-08 | 8 |
maxillary sinus | 2.50e-08 | 1 |
paranasal sinus | 2.50e-08 | 1 |
endoderm-derived structure | 6.15e-08 | 160 |
endoderm | 6.15e-08 | 160 |
presumptive endoderm | 6.15e-08 | 160 |
mammary gland | 1.01e-07 | 4 |
mammary bud | 1.01e-07 | 4 |
mammary ridge | 1.01e-07 | 4 |
mammary placode | 1.01e-07 | 4 |
mucosa of oral region | 1.24e-07 | 4 |
respiratory system mucosa | 1.24e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.93e-25 | 106 |
cell type cancer | 1.86e-17 | 143 |
signet ring cell adenocarcinoma | 6.82e-15 | 2 |
adenocarcinoma | 5.58e-13 | 25 |
cancer | 1.59e-12 | 235 |
disease of cellular proliferation | 3.58e-12 | 239 |
gastrointestinal system cancer | 1.82e-08 | 14 |
paranasal sinus cancer | 2.50e-08 | 1 |
maxillary sinus cancer | 2.50e-08 | 1 |
cystadenocarcinoma | 3.83e-08 | 1 |
mucinous cystadenocarcinoma | 3.83e-08 | 1 |
thoracic cancer | 4.74e-08 | 4 |
breast cancer | 4.74e-08 | 4 |