FFCP PHASE1:Hg19::chr4:3486554..3486569,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr4:3486554..3486569,- | |||
|description=CAGE_peak_at_chr4:3486554..3486569,- | |||
|id=chr4:3486554..3486569,- | |||
|ontology_enrichment_celltype=CL:0000066!1.85e-24!254;CL:0002076!4.02e-09!43;CL:0002327!8.18e-09!4;CL:0002178!2.30e-08!3;CL:0000236!3.39e-07!14;CL:0002251!4.93e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002178;1.17e-22;3!CL:0000236;5.43e-09;13!CL:0000313;2.29e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.69e-22,3;CL:0000066,4.37e-12,253;CL:0000313,2.29e-08,1;CL:0000236,2.48e-08,14 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.08e-22;29 | |||
|ontology_enrichment_disease=DOID:305!1.65e-48!106;DOID:0050687!1.48e-36!143;DOID:162!1.66e-22!235;DOID:14566!1.09e-21!239;DOID:1749!1.71e-13!14;DOID:299!3.63e-13!25;DOID:5093!2.51e-09!4;DOID:1612!2.51e-09!4;DOID:3119!2.59e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:299;5.37e-22;25!DOID:3493;1.55e-15;2!DOID:3119;5.93e-13;14!DOID:305;1.10e-09;106!DOID:5093;1.84e-08;4!DOID:1612;1.84e-08;4!DOID:2152;2.29e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.49e-32,106;DOID:0050687,1.81e-22,143;DOID:299,5.97e-22,25;DOID:3493,1.00e-15,2;DOID:3119,8.03e-13,14;DOID:162,5.92e-12,235;DOID:14566,1.28e-11,239;DOID:5093,2.06e-08,4;DOID:1612,2.06e-08,4;DOID:2152,2.29e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.34e-21!9;UBERON:0001004!4.09e-15!72;UBERON:0008947!5.12e-15!38;UBERON:0003258!5.12e-15!38;UBERON:0000065!3.02e-13!53;UBERON:0001557!3.87e-13!19;UBERON:0000072!4.04e-13!46;UBERON:0001041!1.04e-12!98;UBERON:0001007!4.09e-11!155;UBERON:0001555!4.09e-11!155;UBERON:0007026!4.09e-11!155;UBERON:0000077!9.32e-11!130;UBERON:0004921!1.12e-10!129;UBERON:0004185!1.12e-10!129;UBERON:0004119!4.47e-10!169;UBERON:0000925!4.47e-10!169;UBERON:0006595!4.47e-10!169;UBERON:0001911!8.18e-09!4;UBERON:0005333!8.18e-09!4;UBERON:0008425!8.18e-09!4;UBERON:0005311!8.18e-09!4;UBERON:0001048!1.09e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.23e-62;9!UBERON:0001557;4.23e-62;9!UBERON:0000072;4.71e-16;37!UBERON:0000945;7.88e-14;5!UBERON:0010039;7.88e-14;5!UBERON:0000065;9.08e-14;44!UBERON:0002294;6.84e-10;7!UBERON:0001173;6.84e-10;7!UBERON:0004911;2.29e-08;1!UBERON:0004913;2.29e-08;1!UBERON:0003703;2.29e-08;1!UBERON:0001174;2.29e-08;1!UBERON:0004914;2.29e-08;1!UBERON:0002394;3.93e-08;4!UBERON:0003928;3.93e-08;4!UBERON:0001004;4.97e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.41e-62,9;UBERON:0001557,7.19e-29,19;UBERON:0008947,5.27e-17,38;UBERON:0003258,5.27e-17,38;UBERON:0001041,1.57e-15,87;UBERON:0000072,1.96e-13,47;UBERON:0000065,1.76e-11,54;UBERON:0004921,1.37e-10,118;UBERON:0001007,1.96e-09,145;UBERON:0001555,1.96e-09,145;UBERON:0007026,1.96e-09,145;UBERON:0000945,9.03e-09,8;UBERON:0010039,9.03e-09,8;UBERON:0004911,2.29e-08,1;UBERON:0004119,2.84e-08,160;UBERON:0000925,2.84e-08,160;UBERON:0006595,2.84e-08,160;UBERON:0004913,3.79e-08,1;UBERON:0003703,3.79e-08,1;UBERON:0001174,3.79e-08,1;UBERON:0004914,3.79e-08,1;UBERON:0001004,6.15e-08,74;UBERON:0002294,1.00e-07,9;UBERON:0001173,1.00e-07,9;UBERON:0004912,1.00e-07,9;UBERON:0001048,4.13e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,0.546138611262131,1.77901850772711,0,1.20118796110804,1.14950487990897,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,1.65629520055781,2.02301628093722,2.6511213287183,1.7647035637183,1.08939722046203,1.18635309555548,1.21348177344148,1.96221465125346,1.92373578473195,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,3.1608175918371,3.43394464837949,0,0,0,0,0,0,0.268675568108545,0.581267877027924,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.63337622438398,0,0,0,0,0,0,0.449341755736634,2.14825409610731,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0.341380344856499,0.762760950878299,0.472775363535873,0.344743373241465,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93496928398135,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0.694238953340524,0,0.609414446062818,0,0,0.19351266257817,0.0730893170861856,0.164230914106418,0,0,0,0,0,0,2.93327074102205,0,0,3.79638258206047,1.00863292007874,0.114536596165916,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0.74988244777264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0.260994291965212,0,0,0,0,0,0,0,0,0,0.76872455576384,0.345430341731199,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.353909170043221,0,0.693153996902029,0,0,0,0,0,0,0,0.163771917510097,1.03499260351932,0,0,0,0,0,0.548257766857182,0,0,0.511049710558381,0,0,0.606965604236632,0.682986574053893,0,0.115233987555779,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0.423387050190929,1.8328549483524,0,0,1.4541206133713,3.72970887737923,1.82876887473404,0,0,0,0,0.467878926924211,0.198950775161368,0,1.46829906650648,0,0.452888530700021,0,0,11.2876151126765,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407955318967927,0.801652215796681,0.36757959813938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202056159043763,0.286888821570705,0,0.0814032686109745,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr4:3486554..3486569,- | |||
}} |
Latest revision as of 04:51, 30 July 2015
Short description: | p@chr4:3486554..3486569, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:3486554..3486569, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.69e-22 | 3 |
epithelial cell | 4.37e-12 | 253 |
serous secreting cell | 2.29e-08 | 1 |
B cell | 2.48e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.41e-62 | 9 |
upper respiratory tract | 7.19e-29 | 19 |
respiratory primordium | 5.27e-17 | 38 |
endoderm of foregut | 5.27e-17 | 38 |
foregut | 1.57e-15 | 87 |
segment of respiratory tract | 1.96e-13 | 47 |
respiratory tract | 1.76e-11 | 54 |
subdivision of digestive tract | 1.37e-10 | 118 |
digestive system | 1.96e-09 | 145 |
digestive tract | 1.96e-09 | 145 |
primitive gut | 1.96e-09 | 145 |
stomach | 9.03e-09 | 8 |
food storage organ | 9.03e-09 | 8 |
epithelium of female gonad | 2.29e-08 | 1 |
endoderm-derived structure | 2.84e-08 | 160 |
endoderm | 2.84e-08 | 160 |
presumptive endoderm | 2.84e-08 | 160 |
hepatopancreatic ampulla | 3.79e-08 | 1 |
extrahepatic bile duct | 3.79e-08 | 1 |
common bile duct | 3.79e-08 | 1 |
duodenal papilla | 3.79e-08 | 1 |
respiratory system | 6.15e-08 | 74 |
biliary system | 1.00e-07 | 9 |
biliary tree | 1.00e-07 | 9 |
biliary bud | 1.00e-07 | 9 |
primordium | 4.13e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.49e-32 | 106 |
cell type cancer | 1.81e-22 | 143 |
adenocarcinoma | 5.97e-22 | 25 |
signet ring cell adenocarcinoma | 1.00e-15 | 2 |
gastrointestinal system cancer | 8.03e-13 | 14 |
cancer | 5.92e-12 | 235 |
disease of cellular proliferation | 1.28e-11 | 239 |
thoracic cancer | 2.06e-08 | 4 |
breast cancer | 2.06e-08 | 4 |
ovary epithelial cancer | 2.29e-08 | 1 |