FFCP PHASE1:Hg19::chr5:52552674..52552688,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:52552674..52552688,- | |||
|coexpression_cluster_id=C2642 | |coexpression_cluster_id=C2642 | ||
|description=CAGE_peak_at_chr5:52552674..52552688,- | |description=CAGE_peak_at_chr5:52552674..52552688,- | ||
|id=chr5:52552674..52552688,- | |id=chr5:52552674..52552688,- | ||
|ontology_enrichment_celltype=CL:0002076!1.78e-30!43;CL:0002368!3.53e-30!13;CL:0002202!3.68e-25!9;CL:0002632!3.68e-25!9;CL:0002159!1.86e-22!13;CL:0000223!2.22e-21!59;CL:0002621!3.15e-20!3;CL:0002328!6.81e-20!3;CL:0000068!7.26e-20!3;CL:0000069!7.26e-20!3;CL:0000307!7.26e-20!3;CL:0000377!7.26e-20!3;CL:0000066!2.25e-14!254;CL:0000575!1.54e-13!2;CL:0002251!1.14e-10!21;CL:0002166!4.54e-09!3;CL:0000220!6.86e-09!246;CL:0002321!8.80e-09!248;CL:0000076!1.66e-08!62;CL:0002077!2.38e-08!33;CL:0000362!1.60e-07!8;CL:0000244!2.99e-07!4;CL:0000731!2.99e-07!4;CL:1000306!6.08e-07!4;CL:0002547!6.08e-07!4 | |ontology_enrichment_celltype=CL:0002076!1.78e-30!43;CL:0002368!3.53e-30!13;CL:0002202!3.68e-25!9;CL:0002632!3.68e-25!9;CL:0002159!1.86e-22!13;CL:0000223!2.22e-21!59;CL:0002621!3.15e-20!3;CL:0002328!6.81e-20!3;CL:0000068!7.26e-20!3;CL:0000069!7.26e-20!3;CL:0000307!7.26e-20!3;CL:0000377!7.26e-20!3;CL:0000066!2.25e-14!254;CL:0000575!1.54e-13!2;CL:0002251!1.14e-10!21;CL:0002166!4.54e-09!3;CL:0000220!6.86e-09!246;CL:0002321!8.80e-09!248;CL:0000076!1.66e-08!62;CL:0002077!2.38e-08!33;CL:0000362!1.60e-07!8;CL:0000244!2.99e-07!4;CL:0000731!2.99e-07!4;CL:1000306!6.08e-07!4;CL:0002547!6.08e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.11e-31;13!CL:0002202;1.15e-29;9!CL:0002632;1.15e-29;9!CL:0000307;3.29e-23;3!CL:0002621;6.09e-23;3!CL:0002328;8.04e-23;3!CL:0002076;1.01e-20;42!CL:0002251;1.06e-13;20!CL:0000575;1.71e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.11e-31,13;CL:0002076,3.02e-31,42;CL:0002202,1.24e-29,9;CL:0002632,1.24e-29,9;CL:0000068,2.94e-23,3;CL:0000069,2.94e-23,3;CL:0000307,2.94e-23,3;CL:0000377,2.94e-23,3;CL:0002621,4.61e-23,3;CL:0002328,1.00e-22,3;CL:0000223,1.77e-22,58;CL:0002251,9.73e-14,20;CL:0000575,1.71e-09,2;CL:0000066,1.64e-08,253 | |||
|ontology_enrichment_development_v019=CL:0000377;3.29e-23;3!CL:0000223;6.20e-13;58!UBERON:0008814;8.69e-10;2!UBERON:0010056;8.69e-10;2 | |||
|ontology_enrichment_disease=DOID:1749!1.75e-11!14 | |ontology_enrichment_disease=DOID:1749!1.75e-11!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.81e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.91e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0001949!3.15e-20!3;UBERON:0004815!6.81e-20!3;UBERON:0002031!6.81e-20!3;UBERON:0007196!5.36e-16!14;UBERON:0001558!5.36e-16!14;UBERON:0002185!4.60e-15!4;UBERON:0001004!1.55e-12!72;UBERON:0003126!8.31e-09!7;UBERON:0001005!8.31e-09!7;UBERON:0005178!2.43e-08!34;UBERON:0002224!2.43e-08!34;UBERON:0000065!2.56e-08!53;UBERON:0005181!4.46e-08!35;UBERON:0001828!6.84e-08!8;UBERON:0004807!8.62e-08!28;UBERON:0000997!1.07e-07!1;UBERON:0005056!1.07e-07!1;UBERON:0000166!1.16e-07!21;UBERON:0003343!1.19e-07!4;UBERON:0004785!1.19e-07!4;UBERON:0004119!2.19e-07!169;UBERON:0000925!2.19e-07!169;UBERON:0006595!2.19e-07!169;UBERON:0000964!3.38e-07!4;UBERON:0004348!3.38e-07!4;UBERON:0005427!3.38e-07!4;UBERON:0001708!5.22e-07!4;UBERON:0001704!5.22e-07!4;UBERON:0000485!5.94e-07!9;UBERON:0000415!6.08e-07!4;UBERON:0007240!6.08e-07!4;UBERON:0005742!6.08e-07!4;UBERON:0005734!6.08e-07!4;UBERON:0004664!6.08e-07!4;UBERON:0004663!6.08e-07!4 | |ontology_enrichment_uberon=UBERON:0001949!3.15e-20!3;UBERON:0004815!6.81e-20!3;UBERON:0002031!6.81e-20!3;UBERON:0007196!5.36e-16!14;UBERON:0001558!5.36e-16!14;UBERON:0002185!4.60e-15!4;UBERON:0001004!1.55e-12!72;UBERON:0003126!8.31e-09!7;UBERON:0001005!8.31e-09!7;UBERON:0005178!2.43e-08!34;UBERON:0002224!2.43e-08!34;UBERON:0000065!2.56e-08!53;UBERON:0005181!4.46e-08!35;UBERON:0001828!6.84e-08!8;UBERON:0004807!8.62e-08!28;UBERON:0000997!1.07e-07!1;UBERON:0005056!1.07e-07!1;UBERON:0000166!1.16e-07!21;UBERON:0003343!1.19e-07!4;UBERON:0004785!1.19e-07!4;UBERON:0004119!2.19e-07!169;UBERON:0000925!2.19e-07!169;UBERON:0006595!2.19e-07!169;UBERON:0000964!3.38e-07!4;UBERON:0004348!3.38e-07!4;UBERON:0005427!3.38e-07!4;UBERON:0001708!5.22e-07!4;UBERON:0001704!5.22e-07!4;UBERON:0000485!5.94e-07!9;UBERON:0000415!6.08e-07!4;UBERON:0007240!6.08e-07!4;UBERON:0005742!6.08e-07!4;UBERON:0005734!6.08e-07!4;UBERON:0004664!6.08e-07!4;UBERON:0004663!6.08e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;6.09e-23;3!UBERON:0004815;8.04e-23;3!UBERON:0002031;8.04e-23;3!UBERON:0003729;7.14e-21;13!UBERON:0007196;5.54e-18;15!UBERON:0001558;5.54e-18;15!UBERON:0003343;6.79e-18;4!UBERON:0004785;6.79e-18;4!UBERON:0000161;2.09e-14;19!UBERON:0000166;2.09e-14;19!UBERON:0002185;4.11e-14;5!UBERON:0000344;1.06e-13;20!UBERON:0000486;5.69e-13;12!UBERON:0004807;2.63e-12;22!UBERON:0000974;2.91e-12;6!UBERON:0005911;1.55e-11;36!UBERON:0003126;1.61e-10;7!UBERON:0001005;1.61e-10;7!UBERON:0001004;1.66e-10;65!UBERON:0003929;2.09e-10;7!UBERON:0000485;2.35e-10;7!UBERON:0000165;7.07e-10;28!UBERON:0003350;3.20e-09;8!UBERON:0001828;3.20e-09;8!UBERON:0005178;3.49e-08;34!UBERON:0002224;3.49e-08;34!UBERON:0000065;6.63e-08;44!UBERON:0000072;1.82e-07;37!UBERON:0001444;1.86e-07;48!UBERON:0005181;5.46e-07;35!UBERON:0000033;5.59e-07;50!UBERON:0001723;6.14e-07;3!UBERON:0001033;6.14e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.61e-23,3;UBERON:0004815,1.00e-22,3;UBERON:0002031,1.00e-22,3;UBERON:0003729,6.29e-21,13;UBERON:0007196,5.80e-18,15;UBERON:0001558,5.80e-18,15;UBERON:0003343,6.79e-18,4;UBERON:0004785,6.79e-18,4;UBERON:0001004,1.73e-17,74;UBERON:0002185,4.69e-14,5;UBERON:0000344,9.73e-14,20;UBERON:0000166,1.61e-12,22;UBERON:0000065,7.21e-11,54;UBERON:0003126,1.53e-10,7;UBERON:0001005,1.53e-10,7;UBERON:0004807,9.67e-10,28;UBERON:0000165,1.43e-09,29;UBERON:0000930,1.43e-09,29;UBERON:0004119,1.73e-09,160;UBERON:0000925,1.73e-09,160;UBERON:0006595,1.73e-09,160;UBERON:0003350,2.89e-09,8;UBERON:0001828,2.89e-09,8;UBERON:0000072,6.91e-09,47;UBERON:0001444,1.49e-08,49;UBERON:0000485,3.18e-08,9;UBERON:0005178,4.21e-08,34;UBERON:0002224,4.21e-08,34;UBERON:0005181,7.06e-08,35;UBERON:0000161,9.28e-08,36;UBERON:0000974,1.02e-07,10;UBERON:0000033,1.76e-07,56;UBERON:0008947,2.83e-07,38;UBERON:0003258,2.83e-07,38;UBERON:0001723,6.14e-07,3;UBERON:0001033,6.14e-07,3;UBERON:0010056,6.14e-07,3;UBERON:0000153,9.42e-07,62;UBERON:0007811,9.42e-07,62 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.397227542439656,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,3.27295344709002,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.703702806881416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0,1.91419068741876,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,3.35151137767894,3.26672954583968,0,0,0,1.33029046061003,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.783939179315021,0.522355239482415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4731446994742,4.04339831526184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17605384544123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.397227542439656,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,3.27295344709002,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.703702806881416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0,1.91419068741876,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,3.35151137767894,3.26672954583968,0,0,0,1.33029046061003,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.783939179315021,0.522355239482415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4731446994742,4.04339831526184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17605384544123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:52552674..52552688,- | |short_description=p@chr5:52552674..52552688,- | ||
}} | }} |
Latest revision as of 15:10, 30 July 2015
Short description: | p@chr5:52552674..52552688, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:52552674..52552688, - |
Coexpression cluster: | C2642_oral_Gingival_Bronchial_Tracheal_squamous_Small_Corneal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.11e-31 | 13 |
endo-epithelial cell | 3.02e-31 | 42 |
epithelial cell of tracheobronchial tree | 1.24e-29 | 9 |
epithelial cell of lower respiratory tract | 1.24e-29 | 9 |
duct epithelial cell | 2.94e-23 | 3 |
branched duct epithelial cell | 2.94e-23 | 3 |
tracheal epithelial cell | 2.94e-23 | 3 |
tracheoblast | 2.94e-23 | 3 |
gingival epithelial cell | 4.61e-23 | 3 |
bronchial epithelial cell | 1.00e-22 | 3 |
endodermal cell | 1.77e-22 | 58 |
epithelial cell of alimentary canal | 9.73e-14 | 20 |
corneal epithelial cell | 1.71e-09 | 2 |
epithelial cell | 1.64e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.91e-11 | 14 |