FFCP PHASE1:Hg19::chr6:107235322..107235329,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_ENST00000427903_5end | |association_with_transcript=-12bp_to_ENST00000427903_5end | ||
|cluster_id=chr6:107235322..107235329,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_1_at_ENST00000427903_5end | |description=CAGE_peak_1_at_ENST00000427903_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000181!5.10e-32!12;CL:0000417!5.10e-32!12;CL:0000668!5.10e-32!12;CL:0000414!5.10e-32!12;CL:0000412!5.10e-32!12;CL:0000182!5.10e-32!12;CL:0000313!9.44e-10!1;CL:0000223!1.24e-07!59 | |ontology_enrichment_celltype=CL:0000181!5.10e-32!12;CL:0000417!5.10e-32!12;CL:0000668!5.10e-32!12;CL:0000414!5.10e-32!12;CL:0000412!5.10e-32!12;CL:0000182!5.10e-32!12;CL:0000313!9.44e-10!1;CL:0000223!1.24e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.54e-22;12!CL:0000313;3.75e-18;1!CL:0000159;9.46e-10;2 | |ontology_enrichment_celltype_v019=CL:0000182;1.54e-22;12!CL:0000313;3.75e-18;1!CL:0000159;9.46e-10;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.46e-22,12;CL:0000313,3.75e-18,1;CL:0000159,9.46e-10,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.62e-14;11!UBERON:0003104;2.63e-13;31!UBERON:0009497;5.35e-12;13!UBERON:0003918;1.47e-07;10!UBERON:0007687;1.47e-07;10 | |ontology_enrichment_development_v019=UBERON:0004161;4.62e-14;11!UBERON:0003104;2.63e-13;31!UBERON:0009497;5.35e-12;13!UBERON:0003918;1.47e-07;10!UBERON:0007687;1.47e-07;10 | ||
|ontology_enrichment_disease=DOID:2152!9.44e-10!1;DOID:7!7.97e-07!39 | |ontology_enrichment_disease=DOID:2152!9.44e-10!1;DOID:7!7.97e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:2152;3.75e-18;1!DOID:3493;1.22e-09;2 | |ontology_enrichment_disease_v019=DOID:2152;3.75e-18;1!DOID:3493;1.22e-09;2 | ||
|ontology_enrichment_disease_v019_2=DOID:2152,3.75e-18,1;DOID:3493,1.33e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0002107!5.47e-33!19;UBERON:0006925!5.47e-33!19;UBERON:0008836!5.47e-33!19;UBERON:0009497!1.53e-30!25;UBERON:0000015!1.53e-30!25;UBERON:0002423!1.53e-30!25;UBERON:0006235!1.53e-30!25;UBERON:0004161!1.53e-30!25;UBERON:0008835!2.55e-28!22;UBERON:0003894!2.55e-28!22;UBERON:0009854!4.92e-27!23;UBERON:0005172!3.48e-26!55;UBERON:0005173!3.48e-26!55;UBERON:0007499!9.03e-25!25;UBERON:0005057!9.07e-24!26;UBERON:0009856!9.07e-24!26;UBERON:0002417!2.29e-23!61;UBERON:0000916!2.29e-23!61;UBERON:0002365!9.98e-20!31;UBERON:0002330!9.98e-20!31;UBERON:0002368!2.53e-17!35;UBERON:0005177!2.61e-16!107;UBERON:0000949!2.86e-16!45;UBERON:0003929!2.66e-13!54;UBERON:0009569!2.75e-13!113;UBERON:0005911!5.58e-10!82;UBERON:0004911!9.44e-10!1;UBERON:0002530!9.77e-10!59;UBERON:0000466!1.84e-08!126;UBERON:0000077!4.58e-08!130;UBERON:0001041!4.75e-08!98 | |ontology_enrichment_uberon=UBERON:0002107!5.47e-33!19;UBERON:0006925!5.47e-33!19;UBERON:0008836!5.47e-33!19;UBERON:0009497!1.53e-30!25;UBERON:0000015!1.53e-30!25;UBERON:0002423!1.53e-30!25;UBERON:0006235!1.53e-30!25;UBERON:0004161!1.53e-30!25;UBERON:0008835!2.55e-28!22;UBERON:0003894!2.55e-28!22;UBERON:0009854!4.92e-27!23;UBERON:0005172!3.48e-26!55;UBERON:0005173!3.48e-26!55;UBERON:0007499!9.03e-25!25;UBERON:0005057!9.07e-24!26;UBERON:0009856!9.07e-24!26;UBERON:0002417!2.29e-23!61;UBERON:0000916!2.29e-23!61;UBERON:0002365!9.98e-20!31;UBERON:0002330!9.98e-20!31;UBERON:0002368!2.53e-17!35;UBERON:0005177!2.61e-16!107;UBERON:0000949!2.86e-16!45;UBERON:0003929!2.66e-13!54;UBERON:0009569!2.75e-13!113;UBERON:0005911!5.58e-10!82;UBERON:0004911!9.44e-10!1;UBERON:0002530!9.77e-10!59;UBERON:0000466!1.84e-08!126;UBERON:0000077!4.58e-08!130;UBERON:0001041!4.75e-08!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.62e-31;19!UBERON:0006925;3.62e-31;19!UBERON:0002423;1.11e-23;25!UBERON:0002365;3.79e-19;31!UBERON:0002330;3.79e-19;31!UBERON:0004911;3.75e-18;1!UBERON:0002368;2.42e-16;33!UBERON:0005172;1.48e-14;52!UBERON:0005173;1.48e-14;52!UBERON:0004909;9.46e-10;2!UBERON:0000949;1.20e-09;43!UBERON:0002417;5.04e-08;58!UBERON:0000916;5.04e-08;58 | |ontology_enrichment_uberon_v019=UBERON:0002107;3.62e-31;19!UBERON:0006925;3.62e-31;19!UBERON:0002423;1.11e-23;25!UBERON:0002365;3.79e-19;31!UBERON:0002330;3.79e-19;31!UBERON:0004911;3.75e-18;1!UBERON:0002368;2.42e-16;33!UBERON:0005172;1.48e-14;52!UBERON:0005173;1.48e-14;52!UBERON:0004909;9.46e-10;2!UBERON:0000949;1.20e-09;43!UBERON:0002417;5.04e-08;58!UBERON:0000916;5.04e-08;58 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.62e-31,19;UBERON:0006925,3.62e-31,19;UBERON:0008836,3.62e-31,19;UBERON:0008835,6.45e-27,22;UBERON:0003894,6.45e-27,22;UBERON:0009854,9.57e-26,23;UBERON:0007499,1.11e-23,25;UBERON:0009497,1.11e-23,25;UBERON:0000015,1.11e-23,25;UBERON:0002423,1.11e-23,25;UBERON:0006235,1.11e-23,25;UBERON:0004161,1.11e-23,25;UBERON:0009856,9.05e-23,26;UBERON:0005172,4.20e-19,54;UBERON:0005173,4.20e-19,54;UBERON:0002365,4.37e-19,31;UBERON:0002330,4.37e-19,31;UBERON:0004911,3.75e-18,1;UBERON:0002417,3.82e-17,60;UBERON:0000916,3.82e-17,60;UBERON:0002368,6.82e-17,35;UBERON:0000949,4.16e-13,45;UBERON:0003929,6.83e-11,54;UBERON:0005177,5.86e-10,101;UBERON:0002530,5.96e-10,59;UBERON:0004909,9.46e-10,2;UBERON:0009569,6.41e-09,112;UBERON:0005911,4.33e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24430121722827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,7.86261773342101,7.08947888017685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60044461320525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.0824158583811665,0.13480708770837,1.37798474120648,0,0,0,0,0,0,0,0,0,0,3.23103399926713,0.996637174564964,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34483573884932,1.32506888912221,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,1.72742072974897,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25050640831611,0,2.07260472469858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24430121722827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,7.86261773342101,7.08947888017685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60044461320525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.0824158583811665,0.13480708770837,1.37798474120648,0,0,0,0,0,0,0,0,0,0,3.23103399926713,0.996637174564964,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34483573884932,1.32506888912221,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,1.72742072974897,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25050640831611,0,2.07260472469858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@ENST00000427903 | |short_description=p1@ENST00000427903 | ||
}} | }} |
Latest revision as of 18:00, 30 July 2015
Short description: | p1@ENST00000427903 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000427903_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -12bp_to_ENST00000427903_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.46e-22 | 12 |
serous secreting cell | 3.75e-18 | 1 |
seromucus secreting cell | 9.46e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
liver | 3.62e-31 | 19 |
digestive gland | 3.62e-31 | 19 |
liver bud | 3.62e-31 | 19 |
hepatic diverticulum | 6.45e-27 | 22 |
liver primordium | 6.45e-27 | 22 |
digestive tract diverticulum | 9.57e-26 | 23 |
epithelial sac | 1.11e-23 | 25 |
epithelium of foregut-midgut junction | 1.11e-23 | 25 |
anatomical boundary | 1.11e-23 | 25 |
hepatobiliary system | 1.11e-23 | 25 |
foregut-midgut junction | 1.11e-23 | 25 |
septum transversum | 1.11e-23 | 25 |
sac | 9.05e-23 | 26 |
abdomen element | 4.20e-19 | 54 |
abdominal segment element | 4.20e-19 | 54 |
exocrine gland | 4.37e-19 | 31 |
exocrine system | 4.37e-19 | 31 |
epithelium of female gonad | 3.75e-18 | 1 |
abdominal segment of trunk | 3.82e-17 | 60 |
abdomen | 3.82e-17 | 60 |
endocrine gland | 6.82e-17 | 35 |
endocrine system | 4.16e-13 | 45 |
gut epithelium | 6.83e-11 | 54 |
trunk region element | 5.86e-10 | 101 |
gland | 5.96e-10 | 59 |
epithelium of gonad | 9.46e-10 | 2 |
subdivision of trunk | 6.41e-09 | 112 |
endo-epithelium | 4.33e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 3.75e-18 | 1 |
signet ring cell adenocarcinoma | 1.33e-09 | 2 |