FFCP PHASE1:Hg19::chr6:31084485..31084501,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:31084485..31084501,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_at_chr6:31084485..31084501,- | |description=CAGE_peak_at_chr6:31084485..31084501,- | ||
|id=chr6:31084485..31084501,- | |id=chr6:31084485..31084501,- | ||
|ontology_enrichment_celltype=CL:0002537!1.03e-15!5;CL:0000622!6.82e-15!5;CL:0000154!1.66e-12!6;CL:0000349!4.60e-12!3;CL:0002577!4.60e-12!3;CL:0002621!1.68e-11!3;CL:0002623!1.68e-11!3;CL:0000362!1.75e-09!8;CL:0000150!1.65e-08!9;CL:0000312!3.24e-07!5 | |ontology_enrichment_celltype=CL:0002537!1.03e-15!5;CL:0000622!6.82e-15!5;CL:0000154!1.66e-12!6;CL:0000349!4.60e-12!3;CL:0002577!4.60e-12!3;CL:0002621!1.68e-11!3;CL:0002623!1.68e-11!3;CL:0000362!1.75e-09!8;CL:0000150!1.65e-08!9;CL:0000312!3.24e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.55e-62;19!CL:0002537;9.96e-60;5!CL:0002577;1.91e-44;3!CL:0002541;2.45e-12;3!CL:0000134;8.11e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.55e-62,19;CL:0002537,9.01e-60,5;CL:0002577,2.38e-44,3;CL:0002541,2.31e-12,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5093!1.00e-18!4;DOID:1612!1.00e-18!4;DOID:3151!3.25e-09!1;DOID:3149!3.25e-09!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.20e-28!14;UBERON:0000158!3.20e-28!14;UBERON:0003124!4.81e-19!7;UBERON:0001987!5.15e-19!4;UBERON:0004340!5.15e-19!4;UBERON:0000478!3.74e-16!24;UBERON:0000166!3.55e-13!21;UBERON:0001723!9.83e-12!3;UBERON:0001033!9.83e-12!3;UBERON:0010056!9.83e-12!3;UBERON:0001949!1.68e-11!3;UBERON:0000305!2.24e-11!7;UBERON:0000161!2.63e-10!35;UBERON:0004871!5.15e-10!8;UBERON:0000165!9.12e-10!28;UBERON:0000930!9.12e-10!28;UBERON:0000989!2.35e-09!1;UBERON:0008811!2.35e-09!1;UBERON:0006258!2.35e-09!1;UBERON:0005876!2.35e-09!1;UBERON:0004874!2.35e-09!1;UBERON:0001301!4.15e-09!1;UBERON:0003102!3.23e-08!95;UBERON:0000310!8.34e-08!10;UBERON:0000078!2.75e-07!18;UBERON:0001443!3.89e-07!11 | |ontology_enrichment_uberon=UBERON:0005631!3.20e-28!14;UBERON:0000158!3.20e-28!14;UBERON:0003124!4.81e-19!7;UBERON:0001987!5.15e-19!4;UBERON:0004340!5.15e-19!4;UBERON:0000478!3.74e-16!24;UBERON:0000166!3.55e-13!21;UBERON:0001723!9.83e-12!3;UBERON:0001033!9.83e-12!3;UBERON:0010056!9.83e-12!3;UBERON:0001949!1.68e-11!3;UBERON:0000305!2.24e-11!7;UBERON:0000161!2.63e-10!35;UBERON:0004871!5.15e-10!8;UBERON:0000165!9.12e-10!28;UBERON:0000930!9.12e-10!28;UBERON:0000989!2.35e-09!1;UBERON:0008811!2.35e-09!1;UBERON:0006258!2.35e-09!1;UBERON:0005876!2.35e-09!1;UBERON:0004874!2.35e-09!1;UBERON:0001301!4.15e-09!1;UBERON:0003102!3.23e-08!95;UBERON:0000310!8.34e-08!10;UBERON:0000078!2.75e-07!18;UBERON:0001443!3.89e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.27e-53;10!UBERON:0000158;5.27e-53;10!UBERON:0000478;1.68e-49;24!UBERON:0000305;5.61e-43;7!UBERON:0001987;1.17e-33;4!UBERON:0003124;2.45e-12;3!UBERON:0000920;2.45e-12;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.84e-84,14;UBERON:0000158,2.84e-84,14;UBERON:0000478,1.68e-49,24;UBERON:0000305,5.22e-43,7;UBERON:0003124,1.07e-42,7;UBERON:0004871,9.18e-38,8;UBERON:0001987,1.38e-33,4;UBERON:0004340,1.38e-33,4;UBERON:0004923,2.12e-18,66;UBERON:0000920,2.31e-12,3;UBERON:0000995,3.05e-07,21;UBERON:0005795,5.91e-07,22;UBERON:0003975,5.91e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42502057157008,0,6.04780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3696911453106,2.67268212749375,14.1293922965647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06102203490647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.870866991587845,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42502057157008,0,6.04780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3696911453106,2.67268212749375,14.1293922965647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06102203490647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.870866991587845,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr6:31084485..31084501,- | |short_description=p@chr6:31084485..31084501,- | ||
}} | }} |
Latest revision as of 23:48, 30 July 2015
Short description: | p@chr6:31084485..31084501, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:31084485..31084501, - |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.55e-62 | 19 |
amnion mesenchymal stem cell | 9.01e-60 | 5 |
placental epithelial cell | 2.38e-44 | 3 |
chorionic membrane mesenchymal stem cell | 2.31e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.84e-84 | 14 |
membranous layer | 2.84e-84 | 14 |
extraembryonic structure | 1.68e-49 | 24 |
amnion | 5.22e-43 | 7 |
chorion | 1.07e-42 | 7 |
somatic layer of lateral plate mesoderm | 9.18e-38 | 8 |
placenta | 1.38e-33 | 4 |
allantois | 1.38e-33 | 4 |
organ component layer | 2.12e-18 | 66 |
egg chorion | 2.31e-12 | 3 |
uterus | 3.05e-07 | 21 |
embryonic uterus | 5.91e-07 | 22 |
internal female genitalia | 5.91e-07 | 22 |