FFCP PHASE1:Mm9::chr8:4354144..4354155,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=358|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr8:4354144..4354155,+|id=chr8:4354144..4354155,+|ontology_enrichment_celltype=CL:0002563!9.47e-13!9;CL:0002251!9.47e-13!9;CL:0000239!1.67e-11!6;CL:0000677!1.67e-11!6;CL:0000212!1.67e-11!6;CL:0000584!1.67e-11!6;CL:0000075!1.01e-09!7;CL:0002076!1.06e-08!15;CL:0000066!1.45e-08!25;CL:0000473!7.20e-07!3;CL:0000627!7.20e-07!3;CL:0000682!7.20e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,2.71e-12,6;CL:0000677,2.71e-12,6;CL:0000584,2.71e-12,6;CL:0000682,1.37e-11,3;CL:0000075,1.26e-10,7;CL:0002563,2.14e-08,9;CL:0002251,2.14e-08,9;CL:0000066,6.47e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.05e-23!15;UBERON:0001242!6.60e-20!13;UBERON:0000060!6.60e-20!13;UBERON:0001262!6.60e-20!13;UBERON:0004786!6.60e-20!13;UBERON:0000160!3.10e-14!43;UBERON:0004923!2.47e-13!24;UBERON:0003350!9.47e-13!9;UBERON:0004808!9.47e-13!9;UBERON:0001277!9.47e-13!9;UBERON:0005409!5.07e-11!59;UBERON:0001007!8.69e-11!128;UBERON:0001555!8.69e-11!128;UBERON:0007026!8.69e-11!128;UBERON:0004119!1.77e-10!130;UBERON:0000925!1.77e-10!130;UBERON:0006595!1.77e-10!130;UBERON:0000485!4.00e-10!11;UBERON:0004921!3.59e-09!126;UBERON:0004185!3.59e-09!126;UBERON:0000064!1.18e-07!99;UBERON:0003929!3.52e-07!55;UBERON:0000331!4.26e-07!3;UBERON:0002116!4.26e-07!3;UBERON:0001204!4.26e-07!3;UBERON:0001168!4.26e-07!3;UBERON:0002370!8.27e-07!23;UBERON:0000974!8.27e-07!23;UBERON:0004807!8.27e-07!23;UBERON:0005058!8.27e-07!23;UBERON:0003351!8.27e-07!23;UBERON:0009113!8.27e-07!23;UBERON:0003295!8.27e-07!23;UBERON:0009722!8.27e-07!23;UBERON:0005562!8.27e-07!23;UBERON:0007690!8.27e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.37e-33,15;UBERON:0000331,7.81e-25,3;UBERON:0002116,7.81e-25,3;UBERON:0001204,7.81e-25,3;UBERON:0001168,7.81e-25,3;UBERON:0001242,9.09e-22,13;UBERON:0001262,9.09e-22,13;UBERON:0004786,9.09e-22,13;UBERON:0004923,7.21e-21,24;UBERON:0002108,8.22e-19,4;UBERON:0001962,1.55e-17,2;UBERON:0001961,1.55e-17,2;UBERON:0001744,1.55e-17,2;UBERON:0000160,3.25e-12,31;UBERON:0002465,5.11e-12,3;UBERON:0003199,1.73e-09,1;UBERON:0003350,2.14e-08,9;UBERON:0004808,2.14e-08,9;UBERON:0001277,2.14e-08,9;UBERON:0005409,6.35e-08,47;UBERON:0000485,5.74e-07,11|phase1_expression=0,1.04692622291808,0.454999239389536,1.51232105653415,0.500895729946347,0.839396359559449,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11975752938901,2.2940928106717,2.29692785646008,0.86152399231815,1.50829862880122,3.6104449696711,2.26827116783938,1.55211357458713,0,0,0,0.577703239502549,0,0.408338712524738,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255374676170375,0,0,0,0,0,0,0,0,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0.991256348951394,0,0,0,0,0.201683524623343,0,0.380451252225118,0.949058123089023,0,0.251335208800269,0.198956472041151,0,1.79763881730844,0.648414149624083,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0.406638934253697,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0.513554785824136,0.129920822977795,0,0.39736270956253,0.600977247599844,0.147689527174577,0.504832249740738,0,0.201652370273681,0.292373642219257,0.481059208201647,0.467507608726276,0,0,0.0897138566094757,0,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0.114870937911227,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr8:4354144..4354155,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=358 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr8:4354144..4354155,+ | |||
|description=CAGE_peak_at_chr8:4354144..4354155,+ | |||
|id=chr8:4354144..4354155,+ | |||
|ontology_enrichment_celltype=CL:0002563!9.47e-13!9;CL:0002251!9.47e-13!9;CL:0000239!1.67e-11!6;CL:0000677!1.67e-11!6;CL:0000212!1.67e-11!6;CL:0000584!1.67e-11!6;CL:0000075!1.01e-09!7;CL:0002076!1.06e-08!15;CL:0000066!1.45e-08!25;CL:0000473!7.20e-07!3;CL:0000627!7.20e-07!3;CL:0000682!7.20e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.71e-12,6;CL:0000677,2.71e-12,6;CL:0000584,2.71e-12,6;CL:0000682,1.37e-11,3;CL:0000075,1.26e-10,7;CL:0002563,2.14e-08,9;CL:0002251,2.14e-08,9;CL:0000066,6.47e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.05e-23!15;UBERON:0001242!6.60e-20!13;UBERON:0000060!6.60e-20!13;UBERON:0001262!6.60e-20!13;UBERON:0004786!6.60e-20!13;UBERON:0000160!3.10e-14!43;UBERON:0004923!2.47e-13!24;UBERON:0003350!9.47e-13!9;UBERON:0004808!9.47e-13!9;UBERON:0001277!9.47e-13!9;UBERON:0005409!5.07e-11!59;UBERON:0001007!8.69e-11!128;UBERON:0001555!8.69e-11!128;UBERON:0007026!8.69e-11!128;UBERON:0004119!1.77e-10!130;UBERON:0000925!1.77e-10!130;UBERON:0006595!1.77e-10!130;UBERON:0000485!4.00e-10!11;UBERON:0004921!3.59e-09!126;UBERON:0004185!3.59e-09!126;UBERON:0000064!1.18e-07!99;UBERON:0003929!3.52e-07!55;UBERON:0000331!4.26e-07!3;UBERON:0002116!4.26e-07!3;UBERON:0001204!4.26e-07!3;UBERON:0001168!4.26e-07!3;UBERON:0002370!8.27e-07!23;UBERON:0000974!8.27e-07!23;UBERON:0004807!8.27e-07!23;UBERON:0005058!8.27e-07!23;UBERON:0003351!8.27e-07!23;UBERON:0009113!8.27e-07!23;UBERON:0003295!8.27e-07!23;UBERON:0009722!8.27e-07!23;UBERON:0005562!8.27e-07!23;UBERON:0007690!8.27e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.37e-33,15;UBERON:0000331,7.81e-25,3;UBERON:0002116,7.81e-25,3;UBERON:0001204,7.81e-25,3;UBERON:0001168,7.81e-25,3;UBERON:0001242,9.09e-22,13;UBERON:0001262,9.09e-22,13;UBERON:0004786,9.09e-22,13;UBERON:0004923,7.21e-21,24;UBERON:0002108,8.22e-19,4;UBERON:0001962,1.55e-17,2;UBERON:0001961,1.55e-17,2;UBERON:0001744,1.55e-17,2;UBERON:0000160,3.25e-12,31;UBERON:0002465,5.11e-12,3;UBERON:0003199,1.73e-09,1;UBERON:0003350,2.14e-08,9;UBERON:0004808,2.14e-08,9;UBERON:0001277,2.14e-08,9;UBERON:0005409,6.35e-08,47;UBERON:0000485,5.74e-07,11 | |||
|phase1_expression=0,1.04692622291808,0.454999239389536,1.51232105653415,0.500895729946347,0.839396359559449,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11975752938901,2.2940928106717,2.29692785646008,0.86152399231815,1.50829862880122,3.6104449696711,2.26827116783938,1.55211357458713,0,0,0,0.577703239502549,0,0.408338712524738,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255374676170375,0,0,0,0,0,0,0,0,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0.991256348951394,0,0,0,0,0.201683524623343,0,0.380451252225118,0.949058123089023,0,0.251335208800269,0.198956472041151,0,1.79763881730844,0.648414149624083,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0.406638934253697,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0.513554785824136,0.129920822977795,0,0.39736270956253,0.600977247599844,0.147689527174577,0.504832249740738,0,0.201652370273681,0.292373642219257,0.481059208201647,0.467507608726276,0,0,0.0897138566094757,0,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0.114870937911227,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr8:4354144..4354155,+ | |||
}} |
Latest revision as of 19:39, 3 August 2015
Short description: | p@chr8:4354144..4354155, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:4354144..4354155, + |
Coexpression cluster: | MCL_coexpression_mm9:358 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.71e-12 | 6 |
gut absorptive cell | 2.71e-12 | 6 |
enterocyte | 2.71e-12 | 6 |
M cell of gut | 1.37e-11 | 3 |
columnar/cuboidal epithelial cell | 1.26e-10 | 7 |
intestinal epithelial cell | 2.14e-08 | 9 |
epithelial cell of alimentary canal | 2.14e-08 | 9 |
epithelial cell | 6.47e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.37e-33 | 15 |
ileal mucosa | 7.81e-25 | 3 |
ileum | 7.81e-25 | 3 |
mucosa of small intestine | 7.81e-25 | 3 |
wall of small intestine | 7.81e-25 | 3 |
intestinal mucosa | 9.09e-22 | 13 |
wall of intestine | 9.09e-22 | 13 |
gastrointestinal system mucosa | 9.09e-22 | 13 |
organ component layer | 7.21e-21 | 24 |
small intestine | 8.22e-19 | 4 |
gut-associated lymphoid tissue | 1.55e-17 | 2 |
mucosa-associated lymphoid tissue | 1.55e-17 | 2 |
lymphoid tissue | 1.55e-17 | 2 |
intestine | 3.25e-12 | 31 |
lymphoid system | 5.11e-12 | 3 |
egg chamber | 1.73e-09 | 1 |
epithelium of mucosa | 2.14e-08 | 9 |
gastrointestinal system epithelium | 2.14e-08 | 9 |
intestinal epithelium | 2.14e-08 | 9 |
gastrointestinal system | 6.35e-08 | 47 |
simple columnar epithelium | 5.74e-07 | 11 |