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FFCP PHASE1:Mm9::chr11:98789140..98789168,+: Difference between revisions

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{{FFCP|EntrezGene=19401|HGNC=|UniProt=P11416|association_with_transcript=8bp_to_ENSMUST00000107474_5end|description=CAGE_peak_5_at_Rara_5end|id=chr11:98789140..98789168,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.90e-08!71;UBERON:0003075!3.90e-08!71;UBERON:0007284!3.90e-08!71;UBERON:0000033!4.24e-08!63;UBERON:0003056!8.19e-08!49;UBERON:0000970!1.89e-07!9;UBERON:0000019!1.89e-07!9;UBERON:0000047!1.89e-07!9;UBERON:0004088!1.89e-07!9;UBERON:0002104!1.89e-07!9;UBERON:0001456!1.89e-07!9;UBERON:0003072!1.89e-07!9;UBERON:0003071!1.89e-07!9;UBERON:0004128!1.89e-07!9;UBERON:0000020!5.88e-07!12;UBERON:0001032!5.88e-07!12;UBERON:0004456!5.88e-07!12;UBERON:0000468!8.44e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0000970,7.80e-09,9;UBERON:0000019,7.80e-09,9;UBERON:0000047,7.80e-09,9;UBERON:0010312,7.80e-09,9;UBERON:0004088,7.80e-09,9;UBERON:0002104,7.80e-09,9;UBERON:0001456,7.80e-09,9;UBERON:0003072,7.80e-09,9;UBERON:0004128,7.80e-09,9;UBERON:0003071,7.80e-09,9;UBERON:0000020,5.32e-08,12;UBERON:0001032,5.32e-08,12;UBERON:0004456,5.32e-08,12;UBERON:0000033,4.92e-07,13;UBERON:0005085,4.92e-07,13|phase1_expression=4.16387002472464,0,0,0,0,0.16787927191189,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,0.510259740906419,2.6808556824239,0.522399578277871,0.159992422793407,0,0,0,0,0.190023419456374,0,0,0,0,0,0.288851619751275,0.498703936075477,1.02084678131185,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0.279972843250725,0,0,0,0,0,0,0,1.61853168687678,1.05798195854407,1.90149421051854,0,0,0,0,0,0,0,0.829516898467821,1.4850653216486,0.841299845405528,0.856952953211411,1.54607978666129,1.5923803897944,2.39613677545591,0,2.20231761998777,1.0214987046815,0.921639199537461,1.58263545276233,2.47016637726506,2.6045668527838,0.837548997004143,0.56276261003168,0.916789486660861,0.589257170947335,0.854230084794618,2.05039390407831,0.075726193333184,0,0.579728977403356,0,0,0,0,0,0.280888840263504,0,0,0,1.12674735821344,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0.890652834388949,2.77576522825817,2.74018930480927,1.15307748628029,1.3565037649736,1.41106448562846,0.251333182659351,0,0,0,0.323533699894818,0.662524555381181,0,0,3.80615036115011,4.60782754989601,0.510914110417183,0,0,0,1.49790639404823,1.83000241127451,2.38743269014442,1.91206752211504,0.767146371990992,2.0778804455956,1.1356888414743,1.32391173005411,0.497627882440372,0.252722758433675,5.6819301089348,7.28674480591141,2.98872735763515,6.12211241338187,8.43946979880004,6.12328492361951,6.27757229395764,8.4331552103756,9.31332134660456,2.37124792226126,6.24050064553804,7.03804496655795,3.94552318369635,4.44875598760957,5.2237824978325,3.70407845534298,1.79130840136644,0,0,0.284163499395593,4.34964122324554,3.28336483973535,4.32148947506436,4.49814997611899,5.70616272067471,4.78228049950873,4.41814495025775,2.14618721119695,0.583826711835847,0.16455984991348,0.164167464079095,0.0810688095458557,0,0,0,0.841159794256509,1.54356918568927,0,0,2.55945900642281,4.18026009348789,2.96395161040815,1.21010114774006,0.889512175379481,0.760902504450237,0,0.658795818896044,0.754005626400808,0.596869416123452,0.974820435595601,0,0,0.796565093017469,1.89667900953082,2.28497025219458,2.25415471346161,2.03651327845314,2.13347735884388,1.33258057791605,0.948548056863859,0.295220295959204,0.156998727841375,0.246794327843601,0.296452627087149,0.500535317148282,0.196558995113203,0,0,0.482354319504834,0.25462585178142,0.287696137450811,0,0,0,0,0.312037673114561,0,0,0,0,2.08440552947533,3.42226450528254,3.22515662972857,2.34690248288502,4.02015017860358,2.85652369063216,0.585400943573396,0.630540576424764,0.221464689648775,1.59454768657487,0,0.345369963731791,0.144649058581512,0,0,0,0,1.28440471990234,1.17211686592203,0,0.252470927204373,0.94652465824877,0,0.215423397732799,0,0,0,0,0.584511715822624,0.790575555893047,2.24924921495265,0.99358059645788,3.91744328067962,2.28041743095006,0.659880491890142,0,2.18502572539483,2.11626489875326,0.943025398779491,1.18120757152309,0.922305443831782,0.775284879504663,0.363533729477506,0.356497378384721,0,0,0,1.36175842301515,3.42116078659489,3.49268446213437,4.92975180572662,3.3694644392032,2.67553226403106,2.30368628842969,1.2178597964584,0.23467170806371,0,0,0.98931751764888,4.68246837418126,5.06628569396509,3.70054266409723,3.44695889464629,1.45740418314925,0.927126510052548,0,1.65109494370578,1.48155621895769,0,0,0,0.509935289981566,0.839708713941948,0.414599921413271,0,4.27053591334533,3.45643094115643,2.16010681643603,2.92723614420256,1.31017538247707,0.674321731924103,1.32245529160537,0.523511883968059,0.129614973291793,0,0,2.0932316446157,1.65458490457098,1.75006069509643,1.93739735216597,1.85851738039856,1.17357238645754,1.8228613878153,1.15345278868282,1.93267296660805,2.01621004380506,0,2.63542779877213,0.718976700153791,0.25984164595559,0.537080087002444,0.596044064343795,0.120195449519969,0.295379054349154,0.100966449948148,0.15241361331,0.100826185136841,0.194915761479505,0.288635524920988,0.350630706544707,0.226730383615211,0,0,0,0.386379188064381,0,0.36630324853453,0.214368379079066,0,0.564751842617067,0.460325236507177,0.572895513439397,1.71853182343688,0,0.755393897389701,0.675022500231806,0.45032120322422,1.81256963593682,2.07104124700728,3.73634451303036,4.38927360741134,2.56100408631201,2.91728060481953,2.30574478890781,2.02227859295016,1.55572709461131,1.85431551515005,1.92551525755089,4.54854981174835,1.77435509923168,2.07488975524684,3.37109426891577,2.43295579138503,1.83793500657962,3.33405583898152,2.89710814862139,2.31491064556446,2.47251540481984,2.50238164228475,0.342869252385415,2.66213709239006,2.38436189947321,2.0348498328526,1.88218760830661,2.03075058940024,1.46342378298218,1.31534855718921,2.30866993537965,0.561142271657738,2.01679530811096,2.65962102414021,2.86461730218783,2.32405261778949,3.47231899766054,2.74791635731741,2.8071793013449,2.14871054048298,0.57386499620653,1.32354851471709,0.463735671240843|short_description=p5@Rara}}
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=entrezgene:19401
|HGNC=
|TSSclassifier=NA
|UniProt=uniprot:P11416
|association_with_transcript=8bp_to_ENSMUST00000107474_5end
|cluster_id=chr11:98789140..98789168,+
|description=CAGE_peak_5_at_Rara_5end
|id=chr11:98789140..98789168,+
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002346!3.90e-08!71;UBERON:0003075!3.90e-08!71;UBERON:0007284!3.90e-08!71;UBERON:0000033!4.24e-08!63;UBERON:0003056!8.19e-08!49;UBERON:0000970!1.89e-07!9;UBERON:0000019!1.89e-07!9;UBERON:0000047!1.89e-07!9;UBERON:0004088!1.89e-07!9;UBERON:0002104!1.89e-07!9;UBERON:0001456!1.89e-07!9;UBERON:0003072!1.89e-07!9;UBERON:0003071!1.89e-07!9;UBERON:0004128!1.89e-07!9;UBERON:0000020!5.88e-07!12;UBERON:0001032!5.88e-07!12;UBERON:0004456!5.88e-07!12;UBERON:0000468!8.44e-07!333
|ontology_enrichment_uberon_v019_2=UBERON:0000970,7.80e-09,9;UBERON:0000019,7.80e-09,9;UBERON:0000047,7.80e-09,9;UBERON:0010312,7.80e-09,9;UBERON:0004088,7.80e-09,9;UBERON:0002104,7.80e-09,9;UBERON:0001456,7.80e-09,9;UBERON:0003072,7.80e-09,9;UBERON:0004128,7.80e-09,9;UBERON:0003071,7.80e-09,9;UBERON:0000020,5.32e-08,12;UBERON:0001032,5.32e-08,12;UBERON:0004456,5.32e-08,12;UBERON:0000033,4.92e-07,13;UBERON:0005085,4.92e-07,13
|phase1_expression=4.16387002472464,0,0,0,0,0.16787927191189,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,0.510259740906419,2.6808556824239,0.522399578277871,0.159992422793407,0,0,0,0,0.190023419456374,0,0,0,0,0,0.288851619751275,0.498703936075477,1.02084678131185,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0.279972843250725,0,0,0,0,0,0,0,1.61853168687678,1.05798195854407,1.90149421051854,0,0,0,0,0,0,0,0.829516898467821,1.4850653216486,0.841299845405528,0.856952953211411,1.54607978666129,1.5923803897944,2.39613677545591,0,2.20231761998777,1.0214987046815,0.921639199537461,1.58263545276233,2.47016637726506,2.6045668527838,0.837548997004143,0.56276261003168,0.916789486660861,0.589257170947335,0.854230084794618,2.05039390407831,0.075726193333184,0,0.579728977403356,0,0,0,0,0,0.280888840263504,0,0,0,1.12674735821344,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0.890652834388949,2.77576522825817,2.74018930480927,1.15307748628029,1.3565037649736,1.41106448562846,0.251333182659351,0,0,0,0.323533699894818,0.662524555381181,0,0,3.80615036115011,4.60782754989601,0.510914110417183,0,0,0,1.49790639404823,1.83000241127451,2.38743269014442,1.91206752211504,0.767146371990992,2.0778804455956,1.1356888414743,1.32391173005411,0.497627882440372,0.252722758433675,5.6819301089348,7.28674480591141,2.98872735763515,6.12211241338187,8.43946979880004,6.12328492361951,6.27757229395764,8.4331552103756,9.31332134660456,2.37124792226126,6.24050064553804,7.03804496655795,3.94552318369635,4.44875598760957,5.2237824978325,3.70407845534298,1.79130840136644,0,0,0.284163499395593,4.34964122324554,3.28336483973535,4.32148947506436,4.49814997611899,5.70616272067471,4.78228049950873,4.41814495025775,2.14618721119695,0.583826711835847,0.16455984991348,0.164167464079095,0.0810688095458557,0,0,0,0.841159794256509,1.54356918568927,0,0,2.55945900642281,4.18026009348789,2.96395161040815,1.21010114774006,0.889512175379481,0.760902504450237,0,0.658795818896044,0.754005626400808,0.596869416123452,0.974820435595601,0,0,0.796565093017469,1.89667900953082,2.28497025219458,2.25415471346161,2.03651327845314,2.13347735884388,1.33258057791605,0.948548056863859,0.295220295959204,0.156998727841375,0.246794327843601,0.296452627087149,0.500535317148282,0.196558995113203,0,0,0.482354319504834,0.25462585178142,0.287696137450811,0,0,0,0,0.312037673114561,0,0,0,0,2.08440552947533,3.42226450528254,3.22515662972857,2.34690248288502,4.02015017860358,2.85652369063216,0.585400943573396,0.630540576424764,0.221464689648775,1.59454768657487,0,0.345369963731791,0.144649058581512,0,0,0,0,1.28440471990234,1.17211686592203,0,0.252470927204373,0.94652465824877,0,0.215423397732799,0,0,0,0,0.584511715822624,0.790575555893047,2.24924921495265,0.99358059645788,3.91744328067962,2.28041743095006,0.659880491890142,0,2.18502572539483,2.11626489875326,0.943025398779491,1.18120757152309,0.922305443831782,0.775284879504663,0.363533729477506,0.356497378384721,0,0,0,1.36175842301515,3.42116078659489,3.49268446213437,4.92975180572662,3.3694644392032,2.67553226403106,2.30368628842969,1.2178597964584,0.23467170806371,0,0,0.98931751764888,4.68246837418126,5.06628569396509,3.70054266409723,3.44695889464629,1.45740418314925,0.927126510052548,0,1.65109494370578,1.48155621895769,0,0,0,0.509935289981566,0.839708713941948,0.414599921413271,0,4.27053591334533,3.45643094115643,2.16010681643603,2.92723614420256,1.31017538247707,0.674321731924103,1.32245529160537,0.523511883968059,0.129614973291793,0,0,2.0932316446157,1.65458490457098,1.75006069509643,1.93739735216597,1.85851738039856,1.17357238645754,1.8228613878153,1.15345278868282,1.93267296660805,2.01621004380506,0,2.63542779877213,0.718976700153791,0.25984164595559,0.537080087002444,0.596044064343795,0.120195449519969,0.295379054349154,0.100966449948148,0.15241361331,0.100826185136841,0.194915761479505,0.288635524920988,0.350630706544707,0.226730383615211,0,0,0,0.386379188064381,0,0.36630324853453,0.214368379079066,0,0.564751842617067,0.460325236507177,0.572895513439397,1.71853182343688,0,0.755393897389701,0.675022500231806,0.45032120322422,1.81256963593682,2.07104124700728,3.73634451303036,4.38927360741134,2.56100408631201,2.91728060481953,2.30574478890781,2.02227859295016,1.55572709461131,1.85431551515005,1.92551525755089,4.54854981174835,1.77435509923168,2.07488975524684,3.37109426891577,2.43295579138503,1.83793500657962,3.33405583898152,2.89710814862139,2.31491064556446,2.47251540481984,2.50238164228475,0.342869252385415,2.66213709239006,2.38436189947321,2.0348498328526,1.88218760830661,2.03075058940024,1.46342378298218,1.31534855718921,2.30866993537965,0.561142271657738,2.01679530811096,2.65962102414021,2.86461730218783,2.32405261778949,3.47231899766054,2.74791635731741,2.8071793013449,2.14871054048298,0.57386499620653,1.32354851471709,0.463735671240843
|short_description=p5@Rara
}}

Revision as of 12:53, 4 August 2015

Short description:p5@Rara
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_5_at_Rara_5end
Coexpression cluster:NA
Association with transcript: 8bp_to_ENSMUST00000107474_5end
EntrezGene:19401
Link to Zenbu:ZENBU


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CAGE Expression

Sample

p5@Rara

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G74.16
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.17
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.13
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.14
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.51
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H22.68
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.52
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.16
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.19
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.29
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.50
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F71.02
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.19
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.28
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C31.62
Mouse Granule cells, donor2.CNhs12357.11731-123E31.06
Mouse Granule cells, donor3.CNhs12108.11636-122C71.90
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.83
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F51.49
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.84
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F10.86
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D51.55
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D21.59
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F22.40
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D32.20
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F31.02
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.92
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D41.58
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F42.47
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D82.60
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.84
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.56
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.92
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.59
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.85
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E12.05
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.00
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.58
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.28
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G61.13
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.22
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.00
accessory axillary lymph node, adult.CNhs10475.1063-29H90.26
adrenal gland, adult.CNhs10508.49-24D70.89
adrenal gland, embryo E14.CNhs11038.406-44C52.78
adrenal gland, embryo E16.CNhs11004.1254-43D62.74
adrenal gland, embryo E17.CNhs11043.1263-45I11.15
adrenal gland, embryo E18.CNhs11026.1262-18F51.36
adrenal gland, neonate N00.CNhs11191.1311-23C11.41
adrenal gland, neonate N25.CNhs11223.1377-27I30.25
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.32
bone (os femoris), neonate N16.CNhs11225.1525-43A60.66
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B23.81
cerebellum, neonate N30.CNhs11135.1395-42I24.61
colon, adult.CNhs10468.36-18H70.51
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A41.50
corpus striatum, adult.CNhs10487.19-21D81.83
corpus striatum, neonate N00.CNhs11226.630-43F12.39
cortex, adult.CNhs10473.12-14D51.91
cortex, neonate N30.CNhs11107.1392-42F20.77
diencephalon, adult.CNhs10482.20-12F22.08
diencephalon, neonate N30.CNhs11201.1388-42B21.14
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B11.32
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.50
epididymis, adult.CNhs10490.58-23B20.25
eyeball, adult.CNhs10484.31-12G45.68
eyeball, embryo E12.CNhs11016.345-16C67.29
eyeball, embryo E14.CNhs10521.399-16E22.99
eyeball, embryo E15.CNhs10593.426-16C96.12
eyeball, embryo E17.CNhs11023.1261-18D48.44
eyeball, neonate N00.CNhs11207.633-15C66.12
eyeball, neonate N01.CNhs11140.1532-43E76.28
eyeball, neonate N02.CNhs11205.1551-44G88.43
eyeball, neonate N16.CNhs11188.777-19A29.31
forelimb, embryo E11.CNhs10596.335-25E22.37
forelimb, embryo E12.CNhs10600.359-14H26.24
forelimb, embryo E13.CNhs10589.384-1E27.04
forelimb, embryo E14.CNhs10577.413-26A83.95
forelimb, embryo E15.CNhs11007.437-20E74.45
forelimb, embryo E17.CNhs10598.1517-43C45.22
forelimb, embryo E18.CNhs11008.1520-43B53.70
gonad, embryo E13.CNhs11044.1564-45I61.79
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.28
heart, embryo E11.CNhs10586.331-24E94.35
heart, embryo E12.CNhs11015.353-12F53.28
heart, embryo E13.CNhs11013.376-3I94.32
heart, embryo E14.CNhs10597.403-26D44.50
heart, embryo E15.CNhs11017.431-16C85.71
heart, embryo E16.CNhs11021.457-17C64.78
heart, embryo E17.CNhs11025.479-18E54.42
heart, embryo E18.CNhs11030.1283-20G32.15
heart, neonate N00.CNhs11213.639-21E30.58
heart, neonate N03.CNhs11221.1349-25I20.16
heart, neonate N10.CNhs11118.749-24G10.16
heart, neonate N16.CNhs11209.782-15G10.08
heart, neonate N20.CNhs11127.821-26I60.00
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E80.84
hippocampus, neonate N00.CNhs11228.627-43G11.54
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I52.56
intestine, embryo E13.CNhs11010.381-16D54.18
intestine, embryo E15.CNhs10602.976-16D82.96
intestine, embryo E16.CNhs10585.463-22H41.21
intestine, embryo E17.CNhs10582.482-18D30.89
intestine, embryo E18.CNhs10526.1289-20F70.76
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.66
intestine, neonate N06.CNhs11102.688-20B80.75
intestine, neonate N07.CNhs11095.720-20F20.60
intestine, neonate N10.CNhs11098.755-23A50.97
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.80
kidney, embryo E14.CNhs10606.411-4I91.90
kidney, embryo E15.CNhs10997.434-16F82.28
kidney, embryo E16.CNhs10584.464-22A52.25
kidney, embryo E17.CNhs11028.483-18I22.04
kidney, embryo E18.CNhs11001.1288-20C72.13
kidney, neonate N00.CNhs11214.646-21G71.33
kidney, neonate N10.CNhs11206.758-6D50.95
kidney, neonate N20.CNhs11113.832-19I10.30
kidney, neonate N25.CNhs11122.1353-25F30.16
kidney, neonate N30.CNhs11203.1385-42H10.25
liver, adult pregnant day01.CNhs10466.508-5B20.30
liver, embryo E12.CNhs10601.355-15F80.50
liver, embryo E13.CNhs10524.378-3H60.20
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.48
liver, embryo E17.CNhs10510.481-18A30.25
liver, embryo E18.CNhs10579.499-43G40.29
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.31
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G22.08
lung, embryo E14.CNhs10604.404-26F83.42
lung, embryo E15.CNhs11020.432-17C53.23
lung, embryo E16.CNhs10998.458-17B62.35
lung, embryo E17.CNhs10605.480-44A64.02
lung, embryo E18.CNhs10583.1287-20I62.86
lung, neonate N00.CNhs11224.640-42C60.59
lung, neonate N06.CNhs11212.683-20E50.63
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E61.59
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.35
lung, neonate N30.CNhs11133.1394-42H20.14
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C21.28
medulla oblongata, neonate N30.CNhs11200.1396-42A31.17
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.25
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.95
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.22
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.58
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.79
olfactory brain, adult.CNhs10489.18-22I92.25
ovary, adult.CNhs10507.91-2I70.99
ovary, embryo E18.CNhs11040.505-44H73.92
ovary, neonate N00.CNhs11217.1299-22I42.28
oviduct, adult pregnant day01.CNhs10500.988-6G60.66
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F42.19
pancreas, embryo E15.CNhs11042.1556-45F22.12
pancreas, embryo E16.CNhs11003.460-26E50.94
pancreas, embryo E17.CNhs10599.1558-45G31.18
pancreas, embryo E18.CNhs10580.1535-43I70.92
pancreas, neonate N00.CNhs11105.645-26G90.78
pancreas, neonate N01.CNhs11138.1531-43D70.36
pancreas, neonate N02.CNhs11139.1539-43D80.36
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G81.36
pituitary gland, embryo E12.CNhs11018.346-16E63.42
pituitary gland, embryo E13.CNhs11009.370-44C73.49
pituitary gland, embryo E14.CNhs11037.398-44A54.93
pituitary gland, embryo E15.CNhs10592.427-16B93.37
pituitary gland, embryo E16.CNhs11036.449-43F62.68
pituitary gland, embryo E17.CNhs11039.1265-44F52.30
pituitary gland, neonate N00.CNhs11190.1308-22E91.22
placenta, adult pregnant day10.CNhs10472.539-13I70.23
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.99
skin, neonate N00.CNhs11124.650-25G44.68
skin, neonate N03.CNhs11215.662-22H35.07
skin, neonate N06.CNhs11097.693-20I53.70
skin, neonate N10.CNhs11108.762-6C43.45
small intestine, neonate N16.CNhs11114.790-21I11.46
spinal cord, adult.CNhs10505.24-13C90.93
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C11.65
spleen, embryo E18.CNhs11011.1271-21F21.48
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.51
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.84
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.41
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E34.27
stomach, embryo E15.CNhs10603.1252-16G83.46
stomach, embryo E16.CNhs11022.459-17D42.16
stomach, embryo E17.CNhs11006.1035-18D52.93
stomach, embryo E18.CNhs10999.1286-20C61.31
stomach, neonate N03.CNhs11193.1340-24B80.67
stomach, neonate N07.CNhs11210.718-18A91.32
stomach, neonate N25.CNhs11104.1355-25E40.52
stomach, neonate N30.CNhs11134.1386-42I10.13
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F52.09
testis, embryo E15.CNhs11034.443-27C51.65
testis, embryo E16.CNhs11033.470-26G51.75
testis, embryo E17.CNhs11029.486-18I51.94
testis, embryo E18.CNhs11027.503-18G51.86
testis, neonate N00.CNhs11189.1300-22B71.17
testis, neonate N07.CNhs11222.726-26I41.82
testis, neonate N10.CNhs11204.763-44D91.15
testis, neonate N20.CNhs11110.839-18H31.93
testis, neonate N30.CNhs11130.1391-42E22.02
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I42.64
thymus, embryo E15.CNhs11005.430-45I20.72
thymus, embryo E16.CNhs11002.456-26C50.26
thymus, embryo E17.CNhs10581.478-18C10.54
thymus, embryo E18.CNhs10595.1273-19G40.60
thymus, neonate N02.CNhs11181.1541-43F80.12
thymus, neonate N03.CNhs11137.2104-43C70.30
thymus, neonate N06.CNhs11197.681-26C40.10
thymus, neonate N07.CNhs11211.713-19D30.15
thymus, neonate N10.CNhs11194.748-24E40.10
thymus, neonate N20.CNhs11186.820-7A20.19
thymus, neonate N25.CNhs11125.1362-25G70.29
thymus, neonate N30.CNhs11132.1393-42G20.35
tongue, adult.CNhs10499.32-1B40.23
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.39
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.37
vagina, adult.CNhs10502.89-27D50.21
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A10.56
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A20.46
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.57
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D71.72
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A40.00
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.76
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A60.68
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.45
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A81.81
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A92.07
whole body, embryo E11.CNhs11014.324-5I83.74
whole body, embryo E12.CNhs10587.857-27C94.39
whole body, embryo E13.CNhs10512.372-23H22.56
whole body, embryo E14.5.CNhs10578.420-27D22.92
whole body, embryo E14.CNhs10519.395-14B12.31
whole body, embryo E16.CNhs10514.453-14F22.02
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G51.56
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G51.85
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G51.93
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G54.55
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G51.77
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G52.07
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G53.37
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G52.43
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G51.84
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G53.33
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G52.90
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G52.31
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G52.47
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G52.50
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G52.66
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G52.38
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G52.03
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G51.88
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G52.03
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G51.46
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G51.32
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G52.31
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.56
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G52.02
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G52.66
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G52.86
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G52.32
whole body, embryo E17.5.CNhs10513.490-9F93.47
whole body, embryo E17.CNhs10517.475-3I52.75
whole body, embryo E18.CNhs10516.493-3B32.81
whole body, neonate N00.CNhs10525.657-19C22.15
whole body, neonate N01.CNhs10576.659-23C60.57
whole body, neonate N06.CNhs10515.692-21D11.32
whole body, neonate N10.CNhs10518.761-6B40.46





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
eye7.80e-099
camera-type eye7.80e-099
simple eye7.80e-099
immature eye7.80e-099
ocular region7.80e-099
visual system7.80e-099
face7.80e-099
optic cup7.80e-099
optic vesicle7.80e-099
eye primordium7.80e-099
sense organ5.32e-0812
sensory system5.32e-0812
entire sense organ system5.32e-0812
head4.92e-0713
ectodermal placode4.92e-0713
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