FFCP PHASE1:Mm9::chr3:127492215..127492228,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1278 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:127492215..127492228,+ | |||
|description=CAGE_peak_at_chr3:127492215..127492228,+ | |description=CAGE_peak_at_chr3:127492215..127492228,+ | ||
|id=chr3:127492215..127492228,+ | |id=chr3:127492215..127492228,+ | ||
|ontology_enrichment_celltype=CL:0002563!2.42e-12!9;CL:0002251!2.42e-12!9;CL:0000066!1.56e-09!25;CL:0000239!1.81e-07!6;CL:0000677!1.81e-07!6;CL:0000212!1.81e-07!6;CL:0000584!1.81e-07!6;CL:0000223!4.08e-07!20 | |ontology_enrichment_celltype=CL:0002563!2.42e-12!9;CL:0002251!2.42e-12!9;CL:0000066!1.56e-09!25;CL:0000239!1.81e-07!6;CL:0000677!1.81e-07!6;CL:0000212!1.81e-07!6;CL:0000584!1.81e-07!6;CL:0000223!4.08e-07!20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.68e-24,9;CL:0002251,6.68e-24,9;CL:0000066,1.25e-16,25;CL:0002250,1.30e-14,3;CL:0000682,2.97e-14,3;CL:0002076,4.64e-14,15;CL:0000239,5.11e-12,6;CL:0000677,5.11e-12,6;CL:0000584,5.11e-12,6;CL:0000223,2.34e-10,20;CL:0000075,2.51e-10,7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!9.65e-24!43;UBERON:0000344!7.03e-21!15;UBERON:0001242!1.12e-18!13;UBERON:0000060!1.12e-18!13;UBERON:0001262!1.12e-18!13;UBERON:0004786!1.12e-18!13;UBERON:0005409!1.43e-16!59;UBERON:0003350!2.42e-12!9;UBERON:0004808!2.42e-12!9;UBERON:0001277!2.42e-12!9;UBERON:0004923!1.44e-11!24;UBERON:0000485!9.13e-10!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.95e-39,31;UBERON:0001242,2.22e-33,13;UBERON:0001262,2.22e-33,13;UBERON:0004786,2.22e-33,13;UBERON:0000344,9.64e-29,15;UBERON:0005409,6.77e-25,47;UBERON:0003350,6.68e-24,9;UBERON:0004808,6.68e-24,9;UBERON:0001277,6.68e-24,9;UBERON:0000485,1.97e-19,11;UBERON:0002108,3.18e-18,4;UBERON:0004923,2.03e-17,24;UBERON:0000331,2.42e-14,3;UBERON:0002116,2.42e-14,3;UBERON:0001204,2.42e-14,3;UBERON:0001168,2.42e-14,3;UBERON:0001155,1.17e-09,2;UBERON:0000059,1.17e-09,2;UBERON:0004921,1.10e-08,114;UBERON:0001007,1.73e-08,116;UBERON:0001555,1.73e-08,116;UBERON:0007026,1.73e-08,116;UBERON:0004119,2.70e-08,118;UBERON:0000925,2.70e-08,118;UBERON:0006595,2.70e-08,118 | |||
|phase1_expression=0,3.14077866875425,6.3699893514535,0.30246421130683,0,1.17515490338323,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0.22940928106717,4.59385571292016,3.01533397311352,1.939241094173,6.84084310042946,1.00812051903972,4.21287970245079,0,0,0,3.75507105676657,3.82339684324532,3.26670970019791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0.289864488701678,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0.517875767294343,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,2.81002760729451,0,0,0.127070227073065,0,0,0,0.173824320192276,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,0.528901133327089,0,0,0,0.201683524623343,0.444756087689741,0.380451252225118,2.84717436926707,0.823494773620054,3.51869292320377,0.397912944082302,1.55971269695296,2.69645822596266,0,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54390568381871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7488850197791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.518459893167171,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0.0936415074698824,0.0640251524048693,0.17230640686684,0.476293691283074,0,0,0.412085900803307,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0.233931608445408,0,0,0,0 | |phase1_expression=0,3.14077866875425,6.3699893514535,0.30246421130683,0,1.17515490338323,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0.22940928106717,4.59385571292016,3.01533397311352,1.939241094173,6.84084310042946,1.00812051903972,4.21287970245079,0,0,0,3.75507105676657,3.82339684324532,3.26670970019791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0.289864488701678,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0.517875767294343,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,2.81002760729451,0,0,0.127070227073065,0,0,0,0.173824320192276,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,0.528901133327089,0,0,0,0.201683524623343,0.444756087689741,0.380451252225118,2.84717436926707,0.823494773620054,3.51869292320377,0.397912944082302,1.55971269695296,2.69645822596266,0,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54390568381871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7488850197791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.518459893167171,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0.0936415074698824,0.0640251524048693,0.17230640686684,0.476293691283074,0,0,0.412085900803307,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0.233931608445408,0,0,0,0 | ||
|short_description=p@chr3:127492215..127492228,+ | |short_description=p@chr3:127492215..127492228,+ | ||
}} | }} |
Latest revision as of 00:20, 6 August 2015
Short description: | p@chr3:127492215..127492228, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:127492215..127492228, + |
Coexpression cluster: | MCL_coexpression_mm9:1278 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.68e-24 | 9 |
epithelial cell of alimentary canal | 6.68e-24 | 9 |
epithelial cell | 1.25e-16 | 25 |
intestinal crypt stem cell | 1.30e-14 | 3 |
M cell of gut | 2.97e-14 | 3 |
endo-epithelial cell | 4.64e-14 | 15 |
brush border epithelial cell | 5.11e-12 | 6 |
gut absorptive cell | 5.11e-12 | 6 |
enterocyte | 5.11e-12 | 6 |
endodermal cell | 2.34e-10 | 20 |
columnar/cuboidal epithelial cell | 2.51e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.95e-39 | 31 |
intestinal mucosa | 2.22e-33 | 13 |
wall of intestine | 2.22e-33 | 13 |
gastrointestinal system mucosa | 2.22e-33 | 13 |
mucosa | 9.64e-29 | 15 |
gastrointestinal system | 6.77e-25 | 47 |
epithelium of mucosa | 6.68e-24 | 9 |
gastrointestinal system epithelium | 6.68e-24 | 9 |
intestinal epithelium | 6.68e-24 | 9 |
simple columnar epithelium | 1.97e-19 | 11 |
small intestine | 3.18e-18 | 4 |
organ component layer | 2.03e-17 | 24 |
ileal mucosa | 2.42e-14 | 3 |
ileum | 2.42e-14 | 3 |
mucosa of small intestine | 2.42e-14 | 3 |
wall of small intestine | 2.42e-14 | 3 |
colon | 1.17e-09 | 2 |
large intestine | 1.17e-09 | 2 |
subdivision of digestive tract | 1.10e-08 | 114 |
digestive system | 1.73e-08 | 116 |
digestive tract | 1.73e-08 | 116 |
primitive gut | 1.73e-08 | 116 |
endoderm-derived structure | 2.70e-08 | 118 |
endoderm | 2.70e-08 | 118 |
presumptive endoderm | 2.70e-08 | 118 |