FFCP PHASE1:Mm9::chr3:135257325..135257364,-: Difference between revisions
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{{FFCP|EntrezGene=18033|HGNC=|MCL_coexpression_id=50|UniProt=|association_with_transcript=40bp_to_ENSMUST00000150007_5end|description=CAGE_peak_11_at_Nfkb1_5end|id=chr3:135257325..135257364,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000084,4.24e-12,11;CL:0000827,4.24e-12,11;CL:0000988,6.33e-12,32;CL:0002032,6.33e-12,32;CL:0000037,6.33e-12,32;CL:0000837,6.33e-12,32;CL:0000838,4.06e-11,12;CL:0000542,2.76e-10,13;CL:0000051,2.76e-10,13;CL:0002320,3.55e-08,46;CL:0000134,3.55e-08,46;CL:0000738,6.29e-08,17;CL:0002087,6.29e-08,17;CL:0000219,6.74e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.58e-11!48;UBERON:0002390!5.69e-11!45;UBERON:0003061!5.69e-11!45;UBERON:0004177!1.43e-10!29;UBERON:0000072!2.59e-10!27;UBERON:0003408!4.86e-10!24;UBERON:0002370!2.45e-09!23;UBERON:0000974!2.45e-09!23;UBERON:0004807!2.45e-09!23;UBERON:0005058!2.45e-09!23;UBERON:0003351!2.45e-09!23;UBERON:0009113!2.45e-09!23;UBERON:0003295!2.45e-09!23;UBERON:0009722!2.45e-09!23;UBERON:0005562!2.45e-09!23;UBERON:0007690!2.45e-09!23;UBERON:0001004!4.23e-09!42;UBERON:0006562!1.16e-08!24;UBERON:0001557!1.16e-08!24;UBERON:0001042!1.16e-08!24;UBERON:0008814!1.16e-08!24;UBERON:0009145!1.16e-08!24;UBERON:0000065!1.66e-08!41;UBERON:0000063!1.86e-08!35|ontology_enrichment_uberon_v019_2=UBERON:0000996,2.52e-09,1;UBERON:0002370,1.10e-08,23;UBERON:0000974,1.10e-08,23;UBERON:0004807,1.10e-08,23;UBERON:0005058,1.10e-08,23;UBERON:0003351,1.10e-08,23;UBERON:0009113,1.10e-08,23;UBERON:0003295,1.10e-08,23;UBERON:0009722,1.10e-08,23;UBERON:0005562,1.10e-08,23;UBERON:0007690,1.10e-08,23;UBERON:0006562,2.52e-08,24;UBERON:0003408,2.52e-08,24;UBERON:0001557,2.52e-08,24;UBERON:0001042,2.52e-08,24;UBERON:0008814,2.52e-08,24;UBERON:0009145,2.52e-08,24;UBERON:0002384,3.55e-08,46;UBERON:0000077,5.25e-08,35;UBERON:0000072,2.13e-07,27;UBERON:0004177,6.91e-07,29;UBERON:0005057,6.91e-07,29|phase1_expression=0.160148847104794,0,0,0,0,0,0,0.387369970324729,1.68946466582,1.63845168425395,0.171217968225505,0.319088635981346,0,0.174840804837995,0,0.809901069559304,0,0.946386496074713,0.274228867211478,0.84877930359606,0.0850432901510698,46.2695832596125,43.6203647862022,0,0.22940928106717,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.388859798148567,0,0,0.167782606057736,0,0,0,0.573066879877513,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0,0,0,0,0,0.302904773332736,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.432982082022428,0.253359865475099,0.505524445014783,0,0.776813650941515,0,0.173485326766136,0,0,0,0,0.125666591329675,0,0,0.884610551949874,0.161766849947409,0.441683036920787,0,0,0,0,0.255457055208591,3.11519323715393,0.599902730993408,2.03312363316904,0.149790639404823,0,0.251308704225729,0,0,0.41557608911912,0.324482526135515,0,0.373220911830279,0,0,0.130120442962704,0,0.180062129805349,0,0.0680364991513279,0,0,0.258703370739016,0,0.189106080167819,0,0,0,0,0.205782136407943,0,1.40442637462647,0.51469581422943,0.284163499395593,0,0.469052119962192,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0.102904612379284,0,0.264450566663544,0,0,0.128867461322093,0,0.22237804384487,0.190225626112559,0,0.823494773620054,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0.333690211432188,0,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0,0,0,0,0,0,0,0,0.221464689648775,0.478364305972461,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0.238968797952552,0,0,0,0,0,0,0.283880170416537,0,0,0,0,0,0,0.188605079755898,0,0,0.258428293168221,0.363533729477506,0,0,0,0,0,0,0.129358683782755,0,0.177340233642274,0,0,0,0,0,0,0.32977250588296,0.161464426695906,0,0.238744688006273,0.656563598980245,0,0.741701208042039,0.170870880797853,0.206386867963223,0.370389054739423,0.565105371014073,0.136694227721025,0,0,0.69975726161829,0.829199842826543,0,0.158167996790568,0.406638934253697,0.108005340821801,0,0.218362563746178,0,0,0,0,0.621339313086926,0,0,0,0,0.129159823477731,0,0,0.13020438484395,0,0,0,0.316011120628178,7.70355818102624,3.59488350076895,1.03936658382236,0.537080087002444,0.596044064343795,0.600977247599844,0.738447635872886,0.504832249740738,0.228620419965,0.604957110821043,0.292373642219257,0.0962118416403295,0.350630706544707,0,0,0.269141569828427,0.167884616364078,0,0.563047426353546,0.183151624267265,2.14368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.222246727801615,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0.169229215783353,0.182927972872773,0.263069711437843,0.135804113845862,0,0,0,0,0,0.192906610981141,0,0,0.214871054048298,0.382576664137687,0.220591419119515,0.463735671240843|short_description=p11@Nfkb1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18033 | |||
|HGNC= | |||
|MCL_coexpression_id=50 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=40bp_to_ENSMUST00000150007_5end | |||
|cluster_id=chr3:135257325..135257364,- | |||
|description=CAGE_peak_11_at_Nfkb1_5end | |||
|id=chr3:135257325..135257364,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,4.24e-12,11;CL:0000827,4.24e-12,11;CL:0000988,6.33e-12,32;CL:0002032,6.33e-12,32;CL:0000037,6.33e-12,32;CL:0000837,6.33e-12,32;CL:0000838,4.06e-11,12;CL:0000542,2.76e-10,13;CL:0000051,2.76e-10,13;CL:0002320,3.55e-08,46;CL:0000134,3.55e-08,46;CL:0000738,6.29e-08,17;CL:0002087,6.29e-08,17;CL:0000219,6.74e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.58e-11!48;UBERON:0002390!5.69e-11!45;UBERON:0003061!5.69e-11!45;UBERON:0004177!1.43e-10!29;UBERON:0000072!2.59e-10!27;UBERON:0003408!4.86e-10!24;UBERON:0002370!2.45e-09!23;UBERON:0000974!2.45e-09!23;UBERON:0004807!2.45e-09!23;UBERON:0005058!2.45e-09!23;UBERON:0003351!2.45e-09!23;UBERON:0009113!2.45e-09!23;UBERON:0003295!2.45e-09!23;UBERON:0009722!2.45e-09!23;UBERON:0005562!2.45e-09!23;UBERON:0007690!2.45e-09!23;UBERON:0001004!4.23e-09!42;UBERON:0006562!1.16e-08!24;UBERON:0001557!1.16e-08!24;UBERON:0001042!1.16e-08!24;UBERON:0008814!1.16e-08!24;UBERON:0009145!1.16e-08!24;UBERON:0000065!1.66e-08!41;UBERON:0000063!1.86e-08!35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000996,2.52e-09,1;UBERON:0002370,1.10e-08,23;UBERON:0000974,1.10e-08,23;UBERON:0004807,1.10e-08,23;UBERON:0005058,1.10e-08,23;UBERON:0003351,1.10e-08,23;UBERON:0009113,1.10e-08,23;UBERON:0003295,1.10e-08,23;UBERON:0009722,1.10e-08,23;UBERON:0005562,1.10e-08,23;UBERON:0007690,1.10e-08,23;UBERON:0006562,2.52e-08,24;UBERON:0003408,2.52e-08,24;UBERON:0001557,2.52e-08,24;UBERON:0001042,2.52e-08,24;UBERON:0008814,2.52e-08,24;UBERON:0009145,2.52e-08,24;UBERON:0002384,3.55e-08,46;UBERON:0000077,5.25e-08,35;UBERON:0000072,2.13e-07,27;UBERON:0004177,6.91e-07,29;UBERON:0005057,6.91e-07,29 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0.387369970324729,1.68946466582,1.63845168425395,0.171217968225505,0.319088635981346,0,0.174840804837995,0,0.809901069559304,0,0.946386496074713,0.274228867211478,0.84877930359606,0.0850432901510698,46.2695832596125,43.6203647862022,0,0.22940928106717,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.388859798148567,0,0,0.167782606057736,0,0,0,0.573066879877513,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0,0,0,0,0,0.302904773332736,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.432982082022428,0.253359865475099,0.505524445014783,0,0.776813650941515,0,0.173485326766136,0,0,0,0,0.125666591329675,0,0,0.884610551949874,0.161766849947409,0.441683036920787,0,0,0,0,0.255457055208591,3.11519323715393,0.599902730993408,2.03312363316904,0.149790639404823,0,0.251308704225729,0,0,0.41557608911912,0.324482526135515,0,0.373220911830279,0,0,0.130120442962704,0,0.180062129805349,0,0.0680364991513279,0,0,0.258703370739016,0,0.189106080167819,0,0,0,0,0.205782136407943,0,1.40442637462647,0.51469581422943,0.284163499395593,0,0.469052119962192,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0.102904612379284,0,0.264450566663544,0,0,0.128867461322093,0,0.22237804384487,0.190225626112559,0,0.823494773620054,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0.333690211432188,0,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0,0,0,0,0,0,0,0,0.221464689648775,0.478364305972461,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0.238968797952552,0,0,0,0,0,0,0.283880170416537,0,0,0,0,0,0,0.188605079755898,0,0,0.258428293168221,0.363533729477506,0,0,0,0,0,0,0.129358683782755,0,0.177340233642274,0,0,0,0,0,0,0.32977250588296,0.161464426695906,0,0.238744688006273,0.656563598980245,0,0.741701208042039,0.170870880797853,0.206386867963223,0.370389054739423,0.565105371014073,0.136694227721025,0,0,0.69975726161829,0.829199842826543,0,0.158167996790568,0.406638934253697,0.108005340821801,0,0.218362563746178,0,0,0,0,0.621339313086926,0,0,0,0,0.129159823477731,0,0,0.13020438484395,0,0,0,0.316011120628178,7.70355818102624,3.59488350076895,1.03936658382236,0.537080087002444,0.596044064343795,0.600977247599844,0.738447635872886,0.504832249740738,0.228620419965,0.604957110821043,0.292373642219257,0.0962118416403295,0.350630706544707,0,0,0.269141569828427,0.167884616364078,0,0.563047426353546,0.183151624267265,2.14368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.222246727801615,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0.169229215783353,0.182927972872773,0.263069711437843,0.135804113845862,0,0,0,0,0,0.192906610981141,0,0,0.214871054048298,0.382576664137687,0.220591419119515,0.463735671240843 | |||
|short_description=p11@Nfkb1 | |||
}} |
Revision as of 02:06, 6 August 2015
Short description: | p11@Nfkb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_Nfkb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:50 |
Association with transcript: | 40bp_to_ENSMUST00000150007_5end |
EntrezGene: | 18033 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 4.24e-12 | 11 |
pro-T cell | 4.24e-12 | 11 |
hematopoietic cell | 6.33e-12 | 32 |
hematopoietic oligopotent progenitor cell | 6.33e-12 | 32 |
hematopoietic stem cell | 6.33e-12 | 32 |
hematopoietic multipotent progenitor cell | 6.33e-12 | 32 |
lymphoid lineage restricted progenitor cell | 4.06e-11 | 12 |
lymphocyte | 2.76e-10 | 13 |
common lymphoid progenitor | 2.76e-10 | 13 |
connective tissue cell | 3.55e-08 | 46 |
mesenchymal cell | 3.55e-08 | 46 |
leukocyte | 6.29e-08 | 17 |
nongranular leukocyte | 6.29e-08 | 17 |
motile cell | 6.74e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
vagina | 2.52e-09 | 1 |
thymus | 1.10e-08 | 23 |
neck | 1.10e-08 | 23 |
respiratory system epithelium | 1.10e-08 | 23 |
hemolymphoid system gland | 1.10e-08 | 23 |
pharyngeal epithelium | 1.10e-08 | 23 |
thymic region | 1.10e-08 | 23 |
pharyngeal gland | 1.10e-08 | 23 |
entire pharyngeal arch endoderm | 1.10e-08 | 23 |
thymus primordium | 1.10e-08 | 23 |
early pharyngeal endoderm | 1.10e-08 | 23 |
pharynx | 2.52e-08 | 24 |
gland of gut | 2.52e-08 | 24 |
upper respiratory tract | 2.52e-08 | 24 |
chordate pharynx | 2.52e-08 | 24 |
pharyngeal arch system | 2.52e-08 | 24 |
pharyngeal region of foregut | 2.52e-08 | 24 |
connective tissue | 3.55e-08 | 46 |
mixed endoderm/mesoderm-derived structure | 5.25e-08 | 35 |
segment of respiratory tract | 2.13e-07 | 27 |
hemopoietic organ | 6.91e-07 | 29 |
immune organ | 6.91e-07 | 29 |